Wall clock time and date at job start Mon Mar 30 2020 02:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.90849 * 2 1 4 4 C 1.53986 * 109.91759 * 238.89760 * 2 1 3 5 5 H 1.09000 * 110.31016 * 120.40617 * 4 2 1 6 6 C 1.50694 * 110.31055 * 358.34162 * 4 2 1 7 7 O 1.21300 * 120.00233 * 292.73504 * 6 4 2 8 8 N 1.34771 * 120.00389 * 112.73534 * 6 4 2 9 9 C 1.37104 * 120.00161 * 184.83126 * 8 6 4 10 10 H 1.07993 * 120.00249 * 39.66939 * 9 8 6 11 11 C 1.38955 * 119.99867 * 219.66908 * 9 8 6 12 12 N 1.31416 * 119.99918 * 200.66111 * 11 9 8 13 13 Si 1.86796 * 119.99990 * 20.66460 * 11 9 8 14 14 H 1.48500 * 109.47076 * 264.81211 * 13 11 9 15 15 H 1.48498 * 109.47177 * 24.80808 * 13 11 9 16 16 H 1.48493 * 109.47232 * 144.81318 * 13 11 9 17 17 C 1.46498 * 119.99994 * 4.82990 * 8 6 4 18 18 C 1.50704 * 109.46931 * 275.07292 * 17 8 6 19 19 O 1.20820 * 119.99957 * 359.97438 * 18 17 8 20 20 O 1.34235 * 119.99768 * 179.97438 * 18 17 8 21 21 C 1.54602 * 105.22828 * 239.37481 * 4 2 1 22 22 C 1.55104 * 102.84043 * 338.15305 * 21 4 2 23 23 N 1.47905 * 109.91455 * 121.30909 * 2 1 3 24 24 C 1.46905 * 110.99917 * 265.19625 * 23 2 1 25 25 H 1.08995 * 109.46930 * 184.68857 * 1 2 3 26 26 H 1.09001 * 109.46974 * 304.68943 * 1 2 3 27 27 H 1.09003 * 109.46783 * 64.68642 * 1 2 3 28 28 H 0.96994 * 119.99491 * 179.97438 * 12 11 9 29 29 H 1.08997 * 109.46968 * 35.07274 * 17 8 6 30 30 H 1.08998 * 109.47269 * 155.07677 * 17 8 6 31 31 H 0.96694 * 116.99658 * 179.97438 * 20 18 17 32 32 H 1.08993 * 110.72474 * 96.44785 * 21 4 2 33 33 H 1.08991 * 110.72348 * 219.73721 * 21 4 2 34 34 H 1.09004 * 110.58971 * 278.87326 * 22 21 4 35 35 H 1.08997 * 110.82792 * 155.85497 * 22 21 4 36 36 H 1.09001 * 109.47127 * 59.99655 * 24 23 2 37 37 H 1.08997 * 109.46964 * 180.02562 * 24 23 2 38 38 H 1.08998 * 109.47098 * 300.00492 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9012 1.0249 0.0000 4 6 2.0546 -0.7479 -1.2396 5 1 2.6700 -0.0857 -1.8487 6 6 0.9047 -1.2855 -2.0517 7 8 0.2061 -2.1696 -1.6025 8 7 0.6524 -0.7842 -3.2769 9 6 -0.4513 -1.2023 -3.9748 10 1 -1.3865 -1.3641 -3.4597 11 6 -0.3663 -1.4178 -5.3449 12 7 -1.4564 -1.4169 -6.0790 13 14 1.2971 -1.7089 -6.1433 14 1 1.8224 -0.4256 -6.6747 15 1 2.2424 -2.2506 -5.1343 16 1 1.1490 -2.6816 -7.2554 17 6 1.5573 0.2076 -3.8632 18 6 1.1770 1.5830 -3.3787 19 8 0.2454 1.7207 -2.6218 20 8 1.8733 2.6551 -3.7881 21 6 2.9075 -1.9105 -0.6818 22 6 3.2681 -1.4199 0.7447 23 7 2.0339 -0.7226 1.1881 24 6 2.3212 0.2081 2.2878 25 1 -0.3633 -1.0242 0.0840 26 1 -0.3633 0.5849 0.8450 27 1 -0.3633 0.4394 -0.9290 28 1 -1.3970 -1.5669 -7.0354 29 1 2.5816 -0.0130 -3.5631 30 1 1.4812 0.1713 -4.9499 31 1 1.5917 3.5164 -3.4507 32 1 2.3239 -2.8300 -0.6371 33 1 3.8065 -2.0517 -1.2816 34 1 4.1097 -0.7280 0.7108 35 1 3.4905 -2.2623 1.3996 36 1 1.4095 0.7390 2.5620 37 1 2.6904 -0.3494 3.1485 38 1 3.0771 0.9255 1.9684 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610394809.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:30 Heat of formation + Delta-G solvation = -119.515305 kcal Electronic energy + Delta-G solvation = -22672.720886 eV Core-core repulsion = 19322.264150 eV Total energy + Delta-G solvation = -3350.456736 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.90417 -40.75975 -39.09260 -37.16201 -36.55858 -34.28043 -33.17865 -32.30612 -29.75085 -28.21801 -26.35162 -25.82876 -23.28549 -22.67257 -21.85348 -19.87535 -19.16651 -19.10801 -18.49426 -17.64660 -17.11597 -16.73599 -16.56223 -16.11446 -15.70548 -15.58634 -15.12523 -14.61849 -14.37192 -14.23345 -13.94506 -13.85428 -13.41371 -13.18318 -13.05393 -12.79488 -12.57383 -12.51614 -12.34512 -12.21686 -12.07939 -11.95234 -11.89765 -11.63205 -11.59550 -11.04170 -10.33270 -9.83041 -9.35535 -8.51673 -6.20197 1.16875 1.20331 1.35050 1.46904 1.68878 2.10327 2.18783 2.60848 2.96255 3.01716 3.49673 3.66854 3.77335 3.85034 4.05285 4.19096 4.26872 4.31555 4.46316 4.51083 4.51855 4.56704 4.73981 4.79684 4.89374 4.99563 5.01353 5.03802 5.23780 5.40898 5.49238 5.71615 5.93707 6.04112 6.17174 6.48125 6.90184 7.04364 7.21121 7.79855 8.65774 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.021687 B = 0.007757 C = 0.007008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.792047 B = 3608.949483 C = 3994.644799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.098 3.902 3 H 0.066 0.934 4 C -0.120 4.120 5 H 0.107 0.893 6 C 0.494 3.506 7 O -0.587 6.587 8 N -0.466 5.466 9 C -0.329 4.329 10 H 0.036 0.964 11 C 0.008 3.992 12 N -0.911 5.911 13 Si 0.935 3.065 14 H -0.230 1.230 15 H -0.242 1.242 16 H -0.283 1.283 17 C 0.087 3.913 18 C 0.463 3.537 19 O -0.525 6.525 20 O -0.505 6.505 21 C -0.110 4.110 22 C 0.045 3.955 23 N -0.540 5.540 24 C 0.018 3.982 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.281 0.719 29 H 0.152 0.848 30 H 0.110 0.890 31 H 0.425 0.575 32 H 0.058 0.942 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.134 7.733 7.721 20.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.011 4.011 3 H 0.084 0.916 4 C -0.142 4.142 5 H 0.125 0.875 6 C 0.285 3.715 7 O -0.469 6.469 8 N -0.188 5.188 9 C -0.456 4.456 10 H 0.054 0.946 11 C -0.194 4.194 12 N -0.548 5.548 13 Si 0.755 3.245 14 H -0.154 1.154 15 H -0.165 1.165 16 H -0.209 1.209 17 C -0.038 4.038 18 C 0.304 3.696 19 O -0.413 6.413 20 O -0.319 6.319 21 C -0.148 4.148 22 C -0.082 4.082 23 N -0.265 5.265 24 C -0.130 4.130 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.169 0.831 30 H 0.128 0.872 31 H 0.287 0.713 32 H 0.077 0.923 33 H 0.124 0.876 34 H 0.090 0.910 35 H 0.114 0.886 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 16.135 6.580 8.043 19.192 hybrid contribution -0.374 0.906 -0.747 1.232 sum 15.762 7.486 7.296 18.913 Atomic orbital electron populations 1.21927 0.95782 1.01460 1.00868 1.21973 0.95202 0.95347 0.88534 0.91601 1.22400 0.95391 0.99744 0.96705 0.87513 1.20753 0.86529 0.82180 0.82040 1.90535 1.52427 1.33454 1.70462 1.43440 1.24111 1.34681 1.16581 1.18519 0.88633 1.47244 0.91251 0.94582 1.26297 1.02272 0.94602 0.96262 1.69879 1.31496 1.46119 1.07262 0.86019 0.79199 0.80303 0.78943 1.15414 1.16518 1.20938 1.21840 0.97364 0.83389 1.01228 1.24246 0.79718 0.88096 0.77558 1.90693 1.29055 1.86712 1.34827 1.84486 1.58539 1.19082 1.69777 1.22557 0.99166 0.96415 0.96695 1.23294 0.91009 0.99103 0.94833 1.64643 1.27932 1.27319 1.06580 1.22551 1.00743 0.95270 0.94409 0.93594 0.92830 0.93146 0.90926 0.83119 0.87220 0.71298 0.92346 0.87587 0.91006 0.88619 0.92057 0.89682 0.94049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.89 8.31 71.98 0.60 -5.29 16 2 C 0.10 3.22 3.08 45.06 0.14 3.36 16 3 H 0.07 1.91 7.74 -2.39 -0.02 1.89 16 4 C -0.12 -4.05 2.87 -10.66 -0.03 -4.08 16 5 H 0.11 2.89 5.42 -2.39 -0.01 2.87 16 6 C 0.49 23.11 4.53 87.66 0.40 23.51 16 7 O -0.59 -33.12 14.19 -3.09 -0.04 -33.17 16 8 N -0.47 -22.42 1.68 -639.60 -1.07 -23.49 16 9 C -0.33 -19.48 9.31 84.04 0.78 -18.70 16 10 H 0.04 2.57 8.00 -2.91 -0.02 2.55 16 11 C 0.01 0.43 5.29 84.93 0.45 0.88 16 12 N -0.91 -54.31 13.96 21.67 0.30 -54.01 16 13 Si 0.93 38.95 25.04 68.60 1.72 40.67 16 14 H -0.23 -8.05 6.70 99.48 0.67 -7.38 16 15 H -0.24 -9.40 7.11 99.48 0.71 -8.70 16 16 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 17 C 0.09 3.16 4.23 85.63 0.36 3.52 16 18 C 0.46 15.87 7.93 71.24 0.57 16.43 16 19 O -0.52 -22.10 14.99 21.98 0.33 -21.77 16 20 O -0.51 -11.90 13.42 -51.47 -0.69 -12.59 16 21 C -0.11 -3.11 6.57 31.86 0.21 -2.90 16 22 C 0.04 1.02 6.56 86.71 0.57 1.58 16 23 N -0.54 -15.35 5.19 -883.72 -4.58 -19.93 16 24 C 0.02 0.38 9.40 127.69 1.20 1.58 16 25 H 0.04 2.21 6.32 -2.39 -0.02 2.19 16 26 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.05 2.38 5.16 -2.39 -0.01 2.37 16 28 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 29 H 0.15 3.97 6.33 -2.39 -0.02 3.96 16 30 H 0.11 4.08 3.70 -2.39 -0.01 4.07 16 31 H 0.43 6.12 9.10 -74.06 -0.67 5.45 16 32 H 0.06 2.06 7.31 -2.39 -0.02 2.05 16 33 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.07 1.23 7.96 -2.39 -0.02 1.21 16 35 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 38 H 0.04 0.73 8.01 -2.39 -0.02 0.71 16 Total: -1.00 -80.59 301.53 1.57 -79.01 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.38 Total: 25.38 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: 5.24 Total: 19.90 kcal Atomic # 7 Polarization: -92.07 SS G_CDS: -5.36 Total: -97.43 kcal Atomic # 8 Polarization: -67.13 SS G_CDS: -0.41 Total: -67.53 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 1.72 Total: 40.67 kcal Total: -80.59 1.57 -79.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610394809.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.504 kcal (2) G-P(sol) polarization free energy of solvation -80.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds