Wall clock time and date at job start Mon Mar 30 2020 00:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99838 * 2 1 4 4 H 1.48496 * 109.46971 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47152 * 120.00227 * 3 2 1 6 6 H 1.48503 * 109.47015 * 239.99906 * 3 2 1 7 7 C 1.37875 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99992 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47120 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.46740 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00076 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99473 * 179.97438 * 11 10 9 14 14 C 1.47150 * 120.98491 * 354.61623 * 13 11 10 15 15 C 1.53302 * 108.38518 * 129.44300 * 14 13 11 16 16 O 1.42965 * 109.22123 * 52.30206 * 15 14 13 17 17 C 1.42959 * 114.16565 * 297.41674 * 16 15 14 18 18 C 1.47159 * 120.97955 * 174.33110 * 13 11 10 19 19 H 1.09003 * 109.67553 * 110.83266 * 18 13 11 20 20 C 1.53001 * 109.68129 * 350.28273 * 18 13 11 21 21 C 1.50698 * 109.46925 * 180.42376 * 20 18 13 22 22 N 1.34781 * 119.99574 * 180.02562 * 21 20 18 23 23 O 1.21274 * 120.00174 * 359.97438 * 21 20 18 24 24 H 0.97003 * 119.99671 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46619 * 299.99730 * 9 7 2 26 26 H 1.09001 * 109.46905 * 59.99318 * 9 7 2 27 27 H 1.08999 * 109.47167 * 299.99410 * 10 9 7 28 28 H 1.08996 * 109.47336 * 60.00020 * 10 9 7 29 29 H 1.09005 * 109.67974 * 249.16157 * 14 13 11 30 30 H 1.08996 * 109.68240 * 9.68282 * 14 13 11 31 31 H 1.08995 * 109.50992 * 172.22458 * 15 14 13 32 32 H 1.08996 * 109.51131 * 292.32947 * 15 14 13 33 33 H 1.08998 * 109.51500 * 182.50845 * 17 16 15 34 34 H 1.09000 * 109.51661 * 302.61046 * 17 16 15 35 35 H 1.08997 * 109.47027 * 300.42737 * 20 18 13 36 36 H 1.09003 * 109.46944 * 60.42492 * 20 18 13 37 37 H 0.97000 * 120.00016 * 359.97438 * 22 21 20 38 38 H 0.97001 * 119.99811 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4918 -4.9672 -0.0001 12 8 0.2790 -4.9672 0.0000 13 7 2.1658 -6.1343 -0.0007 14 6 3.6322 -6.1622 -0.1192 15 6 4.1914 -7.0423 1.0046 16 8 3.5286 -8.3089 0.9846 17 6 2.1221 -8.2373 1.2298 18 6 1.4573 -7.4182 0.1233 19 1 1.5169 -7.9628 -0.8191 20 6 -0.0086 -7.1653 0.4813 21 6 -0.7269 -8.4831 0.6173 22 7 -2.0377 -8.5068 0.9300 23 8 -0.1258 -9.5221 0.4444 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6242 -2.5567 0.8903 26 1 0.6247 -2.5571 -0.8896 27 1 2.8719 -3.6043 -0.8895 28 1 2.8720 -3.6043 0.8905 29 1 3.9146 -6.5783 -1.0863 30 1 4.0274 -5.1508 -0.0252 31 1 5.2610 -7.1887 0.8543 32 1 4.0218 -6.5570 1.9657 33 1 1.7028 -9.2433 1.2416 34 1 1.9442 -7.7575 2.1922 35 1 -0.0637 -6.6223 1.4248 36 1 -0.4781 -6.5750 -0.3056 37 1 -2.5186 -7.6758 1.0679 38 1 -2.5000 -9.3550 1.0179 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001642972785.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:29 Heat of formation + Delta-G solvation = -116.934633 kcal Electronic energy + Delta-G solvation = -21452.240788 eV Core-core repulsion = 18101.895958 eV Total energy + Delta-G solvation = -3350.344830 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.79758 -39.23184 -38.19051 -34.72075 -34.09275 -33.77270 -32.96336 -30.70970 -28.90097 -26.85619 -25.36358 -23.60900 -22.54398 -21.24078 -20.55365 -18.83408 -17.73804 -17.04343 -17.00454 -16.52316 -16.20387 -15.65271 -15.44656 -15.13818 -14.89006 -14.53638 -13.94447 -13.74816 -13.68798 -13.17191 -12.77360 -12.40376 -12.37596 -11.83243 -11.63102 -11.50194 -11.28172 -10.91097 -10.87324 -10.33110 -10.19842 -10.17771 -10.09727 -9.94291 -9.80189 -8.80971 -8.56885 -8.46317 -8.33446 -6.37271 -4.07820 2.53318 2.85407 2.94734 3.42062 3.44021 3.48433 3.62933 3.82174 4.52010 4.59617 4.67974 4.79615 4.94212 5.02855 5.06539 5.17643 5.29975 5.40491 5.47824 5.52962 5.67398 5.82138 5.89490 5.93714 6.01660 6.06503 6.54042 6.63856 6.65683 7.01300 7.17579 7.43016 7.48863 7.50850 8.12137 8.14393 8.42845 8.48662 8.86200 9.65644 11.03626 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023726 B = 0.004609 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.879330 B = 6073.675621 C = 7108.480004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.016 3.984 3 Si 1.069 2.931 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.609 4.609 8 H 0.049 0.951 9 C 0.026 3.974 10 C -0.123 4.123 11 C 0.518 3.482 12 O -0.534 6.534 13 N -0.625 5.625 14 C 0.075 3.925 15 C 0.043 3.957 16 O -0.378 6.378 17 C 0.046 3.954 18 C 0.131 3.869 19 H 0.084 0.916 20 C -0.143 4.143 21 C 0.513 3.487 22 N -0.855 5.855 23 O -0.553 6.553 24 H 0.271 0.729 25 H 0.014 0.986 26 H 0.015 0.985 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.056 0.944 33 H 0.127 0.873 34 H 0.047 0.953 35 H 0.099 0.901 36 H 0.140 0.860 37 H 0.405 0.595 38 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.316 -15.708 2.375 16.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.188 4.188 3 Si 0.897 3.103 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.647 4.647 8 H 0.067 0.933 9 C -0.012 4.012 10 C -0.163 4.163 11 C 0.309 3.691 12 O -0.411 6.411 13 N -0.361 5.361 14 C -0.049 4.049 15 C -0.035 4.035 16 O -0.296 6.296 17 C -0.032 4.032 18 C 0.027 3.973 19 H 0.102 0.898 20 C -0.182 4.182 21 C 0.299 3.701 22 N -0.417 5.417 23 O -0.432 6.432 24 H 0.082 0.918 25 H 0.033 0.967 26 H 0.033 0.967 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.074 0.926 33 H 0.144 0.856 34 H 0.066 0.934 35 H 0.118 0.882 36 H 0.157 0.843 37 H 0.234 0.766 38 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 3.107 -14.757 2.192 15.239 hybrid contribution -0.288 -1.366 0.158 1.405 sum 2.819 -16.123 2.350 16.536 Atomic orbital electron populations 1.70750 1.06917 1.30914 1.46000 1.25833 0.96545 1.02669 0.93743 0.83547 0.74887 0.75390 0.76452 1.20750 1.21458 1.21449 1.22018 0.94158 0.91986 1.56587 0.93293 1.19016 0.93777 0.91112 0.97270 1.21784 1.00552 0.91360 1.02609 1.21597 0.88411 0.85337 0.73753 1.90556 1.14278 1.86609 1.49679 1.48431 1.07148 1.05612 1.74933 1.22440 0.80014 1.02510 0.99890 1.23012 0.97573 0.85056 0.97812 1.87984 1.20506 1.28532 1.92613 1.23322 0.80904 1.03068 0.95866 1.21447 0.90977 0.84554 1.00315 0.89829 1.22389 0.94799 0.93748 1.07290 1.21176 0.82422 0.91968 0.74524 1.43867 1.11222 1.12574 1.74084 1.90662 1.66295 1.35457 1.50785 0.91800 0.96746 0.96704 0.90009 0.90031 0.90557 0.87981 0.87684 0.92564 0.85552 0.93445 0.88244 0.84260 0.76625 0.77141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.00 13.65 55.43 0.76 -27.24 16 2 C 0.02 0.47 5.46 -17.82 -0.10 0.38 16 3 Si 1.07 24.84 29.90 -169.99 -5.08 19.76 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.61 -16.96 9.11 -34.44 -0.31 -17.27 16 8 H 0.05 1.30 7.74 -52.48 -0.41 0.90 16 9 C 0.03 0.66 3.57 -27.88 -0.10 0.56 16 10 C -0.12 -2.39 4.01 -27.88 -0.11 -2.50 16 11 C 0.52 9.32 7.53 -10.98 -0.08 9.23 16 12 O -0.53 -10.76 11.75 5.56 0.07 -10.70 16 13 N -0.62 -9.14 3.03 -164.98 -0.50 -9.64 16 14 C 0.07 0.87 6.55 -3.53 -0.02 0.84 16 15 C 0.04 0.46 6.99 37.31 0.26 0.72 16 16 O -0.38 -5.04 10.74 -35.23 -0.38 -5.42 16 17 C 0.05 0.61 5.82 37.09 0.22 0.82 16 18 C 0.13 1.84 2.82 -67.63 -0.19 1.65 16 19 H 0.08 1.23 8.10 -51.93 -0.42 0.80 16 20 C -0.14 -1.93 3.70 -27.88 -0.10 -2.03 16 21 C 0.51 6.40 7.82 -10.98 -0.09 6.31 16 22 N -0.85 -7.55 8.87 31.22 0.28 -7.27 16 23 O -0.55 -8.36 14.58 5.56 0.08 -8.28 16 24 H 0.27 8.43 7.22 -40.82 -0.29 8.13 16 25 H 0.01 0.39 7.97 -51.93 -0.41 -0.02 16 26 H 0.01 0.41 7.97 -51.93 -0.41 -0.01 16 27 H 0.08 1.48 7.80 -51.93 -0.41 1.07 16 28 H 0.08 1.47 7.88 -51.93 -0.41 1.06 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.10 1.10 6.04 -51.93 -0.31 0.79 16 31 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.13 1.77 5.79 -51.93 -0.30 1.47 16 34 H 0.05 0.61 8.13 -51.93 -0.42 0.19 16 35 H 0.10 1.39 7.56 -51.93 -0.39 1.00 16 36 H 0.14 2.12 5.96 -51.95 -0.31 1.81 16 37 H 0.41 2.87 8.83 -40.82 -0.36 2.51 16 38 H 0.40 2.90 8.93 -40.82 -0.36 2.54 16 LS Contribution 307.57 15.07 4.64 4.64 Total: -1.00 -34.24 307.57 -6.07 -40.31 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.29 Total: 5.15 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -0.63 Total: -1.30 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.53 Total: -44.15 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.23 Total: -24.40 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.08 Total: 19.76 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.24 -6.07 -40.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642972785.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.624 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds