Wall clock time and date at job start Mon Mar 30 2020 00:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99838 * 2 1 4 4 H 1.48496 * 109.46971 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47152 * 120.00227 * 3 2 1 6 6 H 1.48503 * 109.47015 * 239.99906 * 3 2 1 7 7 C 1.37875 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99992 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47120 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.46740 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00076 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99473 * 179.97438 * 11 10 9 14 14 C 1.47150 * 120.98491 * 354.61623 * 13 11 10 15 15 C 1.53302 * 108.38518 * 129.44300 * 14 13 11 16 16 O 1.42965 * 109.22123 * 52.30206 * 15 14 13 17 17 C 1.42959 * 114.16565 * 297.41674 * 16 15 14 18 18 C 1.47159 * 120.97955 * 174.33110 * 13 11 10 19 19 H 1.09003 * 109.67553 * 110.83266 * 18 13 11 20 20 C 1.53001 * 109.68129 * 350.28273 * 18 13 11 21 21 C 1.50698 * 109.46925 * 180.42376 * 20 18 13 22 22 N 1.34781 * 119.99574 * 180.02562 * 21 20 18 23 23 O 1.21274 * 120.00174 * 359.97438 * 21 20 18 24 24 H 0.97003 * 119.99671 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46619 * 299.99730 * 9 7 2 26 26 H 1.09001 * 109.46905 * 59.99318 * 9 7 2 27 27 H 1.08999 * 109.47167 * 299.99410 * 10 9 7 28 28 H 1.08996 * 109.47336 * 60.00020 * 10 9 7 29 29 H 1.09005 * 109.67974 * 249.16157 * 14 13 11 30 30 H 1.08996 * 109.68240 * 9.68282 * 14 13 11 31 31 H 1.08995 * 109.50992 * 172.22458 * 15 14 13 32 32 H 1.08996 * 109.51131 * 292.32947 * 15 14 13 33 33 H 1.08998 * 109.51500 * 182.50845 * 17 16 15 34 34 H 1.09000 * 109.51661 * 302.61046 * 17 16 15 35 35 H 1.08997 * 109.47027 * 300.42737 * 20 18 13 36 36 H 1.09003 * 109.46944 * 60.42492 * 20 18 13 37 37 H 0.97000 * 120.00016 * 359.97438 * 22 21 20 38 38 H 0.97001 * 119.99811 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4918 -4.9672 -0.0001 12 8 0.2790 -4.9672 0.0000 13 7 2.1658 -6.1343 -0.0007 14 6 3.6322 -6.1622 -0.1192 15 6 4.1914 -7.0423 1.0046 16 8 3.5286 -8.3089 0.9846 17 6 2.1221 -8.2373 1.2298 18 6 1.4573 -7.4182 0.1233 19 1 1.5169 -7.9628 -0.8191 20 6 -0.0086 -7.1653 0.4813 21 6 -0.7269 -8.4831 0.6173 22 7 -2.0377 -8.5068 0.9300 23 8 -0.1258 -9.5221 0.4444 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6242 -2.5567 0.8903 26 1 0.6247 -2.5571 -0.8896 27 1 2.8719 -3.6043 -0.8895 28 1 2.8720 -3.6043 0.8905 29 1 3.9146 -6.5783 -1.0863 30 1 4.0274 -5.1508 -0.0252 31 1 5.2610 -7.1887 0.8543 32 1 4.0218 -6.5570 1.9657 33 1 1.7028 -9.2433 1.2416 34 1 1.9442 -7.7575 2.1922 35 1 -0.0637 -6.6223 1.4248 36 1 -0.4781 -6.5750 -0.3056 37 1 -2.5186 -7.6758 1.0679 38 1 -2.5000 -9.3550 1.0179 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001642972785.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:29 Heat of formation + Delta-G solvation = -144.081459 kcal Electronic energy + Delta-G solvation = -21453.417963 eV Core-core repulsion = 18101.895958 eV Total energy + Delta-G solvation = -3351.522005 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.98782 -40.34238 -39.36519 -36.10773 -35.84424 -34.71264 -34.27207 -32.46473 -29.98676 -28.02808 -27.16934 -24.85618 -24.06101 -22.63978 -21.63226 -20.14555 -19.06823 -18.54931 -18.04555 -17.85187 -17.29235 -16.87234 -16.71750 -16.22906 -15.93684 -15.73217 -15.57856 -15.37234 -15.03392 -14.35119 -14.15005 -13.99368 -13.81015 -13.49653 -12.97858 -12.67951 -12.58473 -12.36134 -12.06849 -12.02206 -11.93895 -11.80050 -11.39996 -11.16921 -10.73454 -10.69483 -10.52543 -10.09720 -9.62779 -8.66240 -6.38179 1.47000 1.55938 1.56322 1.65352 1.69873 1.83703 2.53667 2.61120 2.88139 3.19612 3.48607 3.56986 3.82949 3.91950 3.97634 4.08127 4.16236 4.25259 4.30576 4.37722 4.41048 4.62575 4.74304 4.83423 4.84062 4.90849 4.94426 5.30110 5.39850 5.42818 5.84632 5.96236 6.05643 6.16713 6.26096 6.33609 6.55403 7.08680 7.25438 7.46695 8.73976 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023726 B = 0.004609 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.879330 B = 6073.675621 C = 7108.480004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.042 4.042 3 Si 1.121 2.879 4 H -0.289 1.289 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.618 4.618 8 H 0.065 0.935 9 C 0.030 3.970 10 C -0.112 4.112 11 C 0.516 3.484 12 O -0.565 6.565 13 N -0.616 5.616 14 C 0.067 3.933 15 C 0.042 3.958 16 O -0.390 6.390 17 C 0.055 3.945 18 C 0.130 3.870 19 H 0.078 0.922 20 C -0.134 4.134 21 C 0.516 3.484 22 N -0.835 5.835 23 O -0.580 6.580 24 H 0.253 0.747 25 H -0.016 1.016 26 H -0.018 1.018 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.138 0.862 32 H 0.058 0.942 33 H 0.120 0.880 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.122 0.878 37 H 0.415 0.585 38 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.505 -15.923 2.646 17.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.239 4.239 3 Si 0.941 3.059 4 H -0.215 1.215 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.656 4.656 8 H 0.083 0.917 9 C -0.008 4.008 10 C -0.151 4.151 11 C 0.307 3.693 12 O -0.445 6.445 13 N -0.350 5.350 14 C -0.055 4.055 15 C -0.035 4.035 16 O -0.309 6.309 17 C -0.022 4.022 18 C 0.026 3.974 19 H 0.096 0.904 20 C -0.174 4.174 21 C 0.302 3.698 22 N -0.399 5.399 23 O -0.461 6.461 24 H 0.062 0.938 25 H 0.002 0.998 26 H 0.000 1.000 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.108 0.892 30 H 0.133 0.867 31 H 0.155 0.845 32 H 0.076 0.924 33 H 0.138 0.862 34 H 0.068 0.932 35 H 0.112 0.888 36 H 0.139 0.861 37 H 0.246 0.754 38 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 5.309 -15.017 2.471 16.118 hybrid contribution -0.980 -1.358 0.067 1.676 sum 4.329 -16.374 2.537 17.126 Atomic orbital electron populations 1.70902 1.08308 1.29810 1.48734 1.27530 0.96505 1.07183 0.92700 0.82906 0.74040 0.70681 0.78259 1.21482 1.18966 1.19063 1.22494 0.95144 0.92797 1.55165 0.91678 1.18843 0.94273 0.93433 0.94230 1.21552 0.99234 0.89903 1.04454 1.21300 0.87939 0.85924 0.74109 1.90569 1.15496 1.87162 1.51288 1.48375 1.08580 1.04731 1.73360 1.22763 0.77827 1.03758 1.01181 1.23227 0.98963 0.83826 0.97447 1.87971 1.20201 1.30091 1.92589 1.23163 0.81174 1.02417 0.95444 1.21502 0.91292 0.84078 1.00504 0.90365 1.22174 0.94812 0.94118 1.06266 1.20924 0.83307 0.90971 0.74629 1.43690 1.10059 1.13802 1.72322 1.90654 1.67133 1.35936 1.52366 0.93773 0.99792 1.00001 0.88165 0.88019 0.89182 0.86715 0.84462 0.92352 0.86197 0.93165 0.88840 0.86052 0.75425 0.75808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.31 13.65 21.45 0.29 -59.02 16 2 C -0.04 -2.42 5.46 84.65 0.46 -1.96 16 3 Si 1.12 48.90 29.90 68.60 2.05 50.96 16 4 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 6 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 7 C -0.62 -34.20 9.11 25.60 0.23 -33.97 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.56 3.57 29.85 0.11 1.66 16 10 C -0.11 -4.23 4.01 29.85 0.12 -4.11 16 11 C 0.52 18.45 7.53 87.66 0.66 19.11 16 12 O -0.57 -23.47 11.75 -3.03 -0.04 -23.50 16 13 N -0.62 -17.25 3.03 -794.26 -2.40 -19.66 16 14 C 0.07 1.36 6.55 86.36 0.57 1.93 16 15 C 0.04 0.78 6.99 72.08 0.50 1.28 16 16 O -0.39 -9.57 10.74 -148.98 -1.60 -11.17 16 17 C 0.06 1.41 5.82 71.94 0.42 1.83 16 18 C 0.13 3.57 2.82 44.83 0.13 3.70 16 19 H 0.08 2.26 8.10 -2.39 -0.02 2.24 16 20 C -0.13 -3.66 3.70 29.85 0.11 -3.55 16 21 C 0.52 12.70 7.82 87.66 0.69 13.39 16 22 N -0.84 -14.07 8.87 -173.53 -1.54 -15.61 16 23 O -0.58 -17.28 14.58 -3.01 -0.04 -17.33 16 24 H 0.25 16.47 7.22 -92.71 -0.67 15.80 16 25 H -0.02 -0.94 7.97 -2.39 -0.02 -0.96 16 26 H -0.02 -1.07 7.97 -2.39 -0.02 -1.09 16 27 H 0.10 3.41 7.80 -2.39 -0.02 3.39 16 28 H 0.10 3.43 7.88 -2.39 -0.02 3.41 16 29 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.11 2.08 6.04 -2.39 -0.01 2.06 16 31 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 33 H 0.12 3.27 5.79 -2.39 -0.01 3.26 16 34 H 0.05 1.24 8.13 -2.39 -0.02 1.22 16 35 H 0.09 2.65 7.56 -2.39 -0.02 2.63 16 36 H 0.12 3.82 5.96 -2.78 -0.02 3.80 16 37 H 0.42 5.58 8.83 -92.71 -0.82 4.76 16 38 H 0.41 5.45 8.93 -92.71 -0.83 4.62 16 Total: -1.00 -75.30 307.57 0.26 -75.04 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -0.45 Total: 20.98 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 3.99 Total: -0.68 kcal Atomic # 7 Polarization: -90.64 SS G_CDS: -3.65 Total: -94.29 kcal Atomic # 8 Polarization: -50.32 SS G_CDS: -1.68 Total: -52.00 kcal Atomic # 14 Polarization: 48.90 SS G_CDS: 2.05 Total: 50.96 kcal Total: -75.30 0.26 -75.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642972785.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.043 kcal (2) G-P(sol) polarization free energy of solvation -75.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds