Wall clock time and date at job start Mon Mar 30 2020 02:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 N 1.46501 * 109.47349 * 175.00381 * 4 2 1 6 6 C 1.34775 * 119.99874 * 180.02562 * 5 4 2 7 7 O 1.21278 * 120.00286 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99538 * 179.97438 * 6 5 4 9 9 C 1.53011 * 109.46807 * 179.97438 * 8 6 5 10 10 H 1.09001 * 110.76640 * 305.69568 * 9 8 6 11 11 C 1.54564 * 110.86781 * 69.22304 * 9 8 6 12 12 O 1.46155 * 104.28873 * 144.85438 * 11 9 8 13 13 C 1.34065 * 110.02977 * 329.68304 * 12 11 9 14 14 O 1.20828 * 125.09260 * 200.68080 * 13 12 11 15 15 C 1.51324 * 109.81364 * 20.66891 * 13 12 11 16 16 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 17 17 C 1.36931 * 119.99788 * 84.99932 * 16 2 1 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 2 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 2 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48508 * 109.46872 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 119.99997 * 21 19 17 24 24 H 1.48498 * 109.47018 * 240.00044 * 21 19 17 25 25 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 26 26 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 28 28 H 1.09009 * 109.46837 * 294.99855 * 4 2 1 29 29 H 1.09000 * 109.47433 * 54.99587 * 4 2 1 30 30 H 0.97000 * 120.00018 * 359.97438 * 5 4 2 31 31 H 1.09000 * 109.47726 * 299.99386 * 8 6 5 32 32 H 1.08998 * 109.47231 * 60.00064 * 8 6 5 33 33 H 1.08995 * 110.44097 * 263.75175 * 11 9 8 34 34 H 1.09003 * 110.44022 * 26.27248 * 11 9 8 35 35 H 1.08998 * 110.37340 * 238.85645 * 15 13 12 36 36 H 1.09006 * 110.36674 * 116.52292 * 15 13 12 37 37 H 0.97000 * 119.99792 * 264.99726 * 16 2 1 38 38 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1906 6 6 4.1730 -1.4292 2.1907 7 8 3.5699 -1.8842 3.1394 8 6 5.6749 -1.5377 2.1301 9 6 6.1849 -2.2589 3.3794 10 1 5.8235 -1.7686 4.2833 11 6 5.7759 -3.7493 3.3603 12 8 6.9025 -4.4406 3.9840 13 6 8.0407 -3.7747 3.7422 14 8 9.1501 -4.2490 3.8064 15 6 7.7277 -2.3400 3.3767 16 7 2.0183 -0.6907 -1.1962 17 6 2.1491 -0.0075 -2.3757 18 1 1.8926 1.0405 -2.4242 19 6 2.6172 -0.6605 -3.5077 20 7 2.9303 -1.9375 -3.4485 21 14 2.8029 0.2732 -5.1149 22 1 2.3867 1.6851 -4.9180 23 1 4.2219 0.2312 -5.5507 24 1 1.9472 -0.3544 -6.1537 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.7517 -0.1583 2.1370 29 1 1.6054 -1.7198 1.2952 30 1 3.9824 -0.4627 0.4316 31 1 5.9630 -2.1005 1.2422 32 1 6.1098 -0.5393 2.0843 33 1 4.8642 -3.9013 3.9381 34 1 5.6398 -4.0936 2.3351 35 1 8.1181 -2.1070 2.3860 36 1 8.1447 -1.6596 4.1193 37 1 2.2490 -1.6318 -1.1526 38 1 3.2571 -2.3939 -4.2397 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662195838.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:45 Heat of formation + Delta-G solvation = -120.907236 kcal Electronic energy + Delta-G solvation = -20575.752812 eV Core-core repulsion = 17225.235717 eV Total energy + Delta-G solvation = -3350.517095 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.16041 -39.50610 -37.60193 -36.46422 -34.38111 -33.65438 -31.96587 -29.40012 -28.72660 -27.52836 -25.47595 -23.73190 -21.73058 -21.43863 -20.32604 -19.87797 -17.73763 -17.39213 -16.90659 -16.48377 -16.36378 -15.78279 -15.39910 -14.98200 -14.19222 -14.11390 -13.88412 -13.75649 -13.42670 -13.06217 -12.73691 -12.33434 -12.26341 -12.13997 -11.99194 -11.54650 -11.44224 -11.38438 -10.96560 -10.84110 -10.72036 -10.42808 -10.38671 -10.08861 -9.81514 -9.69724 -9.08371 -8.76674 -7.14237 -5.91168 -3.21684 1.89466 2.75710 3.13282 3.32067 3.34256 3.40145 3.42089 3.75451 4.05841 4.36045 4.46476 4.51343 4.90439 5.05769 5.12323 5.23549 5.32647 5.37286 5.38895 5.43271 5.48616 5.57330 5.80495 5.84188 5.99122 6.09480 6.22401 6.47033 6.59473 6.65333 6.72215 6.94452 7.28590 7.57707 7.78083 8.26300 8.39694 9.38622 9.92635 10.28222 11.30754 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.020060 B = 0.003981 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.481052 B = 7031.271436 C = 8009.363288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.159 3.841 3 H 0.053 0.947 4 C 0.114 3.886 5 N -0.710 5.710 6 C 0.508 3.492 7 O -0.556 6.556 8 C -0.136 4.136 9 C -0.104 4.104 10 H 0.107 0.893 11 C 0.062 3.938 12 O -0.350 6.350 13 C 0.484 3.516 14 O -0.464 6.464 15 C -0.186 4.186 16 N -0.724 5.724 17 C -0.244 4.244 18 H 0.072 0.928 19 C -0.009 4.009 20 N -0.930 5.930 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.412 0.588 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.385 0.615 38 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.648 2.675 12.301 13.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.049 3.951 3 H 0.071 0.929 4 C -0.010 4.010 5 N -0.361 5.361 6 C 0.294 3.706 7 O -0.435 6.435 8 C -0.176 4.176 9 C -0.123 4.123 10 H 0.126 0.874 11 C -0.012 4.012 12 O -0.267 6.267 13 C 0.325 3.675 14 O -0.348 6.348 15 C -0.224 4.224 16 N -0.367 5.367 17 C -0.375 4.375 18 H 0.090 0.910 19 C -0.206 4.206 20 N -0.578 5.578 21 Si 0.737 3.263 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.248 0.752 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.141 0.859 34 H 0.105 0.895 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.219 0.781 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.705 2.067 12.958 13.939 hybrid contribution 0.203 0.491 -1.539 1.628 sum 4.908 2.558 11.418 12.689 Atomic orbital electron populations 1.22365 0.98292 1.01302 1.00412 1.20513 0.92723 0.95732 0.86151 0.92881 1.21705 0.79450 1.01178 0.98679 1.46011 1.08417 1.58357 1.23291 1.20455 0.89605 0.77992 0.82549 1.90667 1.70458 1.48698 1.33716 1.21723 0.93419 1.03555 0.98892 1.22242 0.93204 0.96377 1.00467 0.87441 1.24417 0.87561 0.89593 0.99620 1.87075 1.18156 1.52628 1.68801 1.23108 0.83933 0.88116 0.72380 1.90712 1.21378 1.75502 1.47243 1.23007 0.97091 0.96115 1.06168 1.42483 1.78106 1.10816 1.05274 1.19264 1.36881 0.93967 0.87415 0.91049 1.24741 1.01873 0.95910 0.98051 1.69666 1.50441 1.08669 1.29006 0.86151 0.77342 0.78834 0.84015 1.20546 1.21837 1.21843 0.92300 0.93195 0.94185 0.91796 0.91770 0.75192 0.87911 0.87785 0.85931 0.89458 0.86590 0.86634 0.78112 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.49 37.16 0.35 -2.30 16 2 C 0.16 2.75 3.05 -67.93 -0.21 2.54 16 3 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 4 C 0.11 1.74 5.23 -4.04 -0.02 1.72 16 5 N -0.71 -9.97 5.39 -60.29 -0.32 -10.30 16 6 C 0.51 6.57 7.64 -10.99 -0.08 6.48 16 7 O -0.56 -8.61 14.95 5.56 0.08 -8.53 16 8 C -0.14 -1.21 5.00 -27.88 -0.14 -1.35 16 9 C -0.10 -0.89 2.75 -89.01 -0.24 -1.14 16 10 H 0.11 0.93 7.97 -51.93 -0.41 0.52 16 11 C 0.06 0.63 6.67 37.98 0.25 0.88 16 12 O -0.35 -4.36 11.06 -38.48 -0.43 -4.78 16 13 C 0.48 5.85 8.58 36.31 0.31 6.16 16 14 O -0.46 -7.21 18.00 -18.41 -0.33 -7.54 16 15 C -0.19 -1.46 6.52 -26.79 -0.17 -1.64 16 16 N -0.72 -15.94 4.56 -53.42 -0.24 -16.18 16 17 C -0.24 -6.12 9.93 -15.06 -0.15 -6.27 16 18 H 0.07 1.76 7.83 -52.49 -0.41 1.34 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 20 N -0.93 -26.10 13.06 55.49 0.72 -25.37 16 21 Si 0.91 20.95 29.55 -169.99 -5.02 15.93 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.41 5.89 8.14 -40.82 -0.33 5.56 16 31 H 0.10 0.86 8.01 -51.93 -0.42 0.45 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.12 1.29 7.67 -51.93 -0.40 0.89 16 34 H 0.09 0.86 7.82 -51.93 -0.41 0.45 16 35 H 0.12 0.76 7.80 -51.93 -0.40 0.36 16 36 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.38 9.20 7.80 -40.82 -0.32 8.89 16 38 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 324.68 15.07 4.89 4.89 Total: -1.00 -31.00 324.68 -6.46 -37.46 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -5.61 Total: 9.66 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -0.20 Total: 4.76 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 0.16 Total: -51.85 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.67 Total: -20.84 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.00 -6.46 -37.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662195838.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.448 kcal (2) G-P(sol) polarization free energy of solvation -30.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds