Wall clock time and date at job start Mon Mar 30 2020 02:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 N 1.46501 * 109.47349 * 175.00381 * 4 2 1 6 6 C 1.34775 * 119.99874 * 180.02562 * 5 4 2 7 7 O 1.21278 * 120.00286 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99538 * 179.97438 * 6 5 4 9 9 C 1.53011 * 109.46807 * 179.97438 * 8 6 5 10 10 H 1.09001 * 110.76640 * 305.69568 * 9 8 6 11 11 C 1.54564 * 110.86781 * 69.22304 * 9 8 6 12 12 O 1.46155 * 104.28873 * 144.85438 * 11 9 8 13 13 C 1.34065 * 110.02977 * 329.68304 * 12 11 9 14 14 O 1.20828 * 125.09260 * 200.68080 * 13 12 11 15 15 C 1.51324 * 109.81364 * 20.66891 * 13 12 11 16 16 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 17 17 C 1.36931 * 119.99788 * 84.99932 * 16 2 1 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 2 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 2 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48508 * 109.46872 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 119.99997 * 21 19 17 24 24 H 1.48498 * 109.47018 * 240.00044 * 21 19 17 25 25 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 26 26 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 28 28 H 1.09009 * 109.46837 * 294.99855 * 4 2 1 29 29 H 1.09000 * 109.47433 * 54.99587 * 4 2 1 30 30 H 0.97000 * 120.00018 * 359.97438 * 5 4 2 31 31 H 1.09000 * 109.47726 * 299.99386 * 8 6 5 32 32 H 1.08998 * 109.47231 * 60.00064 * 8 6 5 33 33 H 1.08995 * 110.44097 * 263.75175 * 11 9 8 34 34 H 1.09003 * 110.44022 * 26.27248 * 11 9 8 35 35 H 1.08998 * 110.37340 * 238.85645 * 15 13 12 36 36 H 1.09006 * 110.36674 * 116.52292 * 15 13 12 37 37 H 0.97000 * 119.99792 * 264.99726 * 16 2 1 38 38 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1906 6 6 4.1730 -1.4292 2.1907 7 8 3.5699 -1.8842 3.1394 8 6 5.6749 -1.5377 2.1301 9 6 6.1849 -2.2589 3.3794 10 1 5.8235 -1.7686 4.2833 11 6 5.7759 -3.7493 3.3603 12 8 6.9025 -4.4406 3.9840 13 6 8.0407 -3.7747 3.7422 14 8 9.1501 -4.2490 3.8064 15 6 7.7277 -2.3400 3.3767 16 7 2.0183 -0.6907 -1.1962 17 6 2.1491 -0.0075 -2.3757 18 1 1.8926 1.0405 -2.4242 19 6 2.6172 -0.6605 -3.5077 20 7 2.9303 -1.9375 -3.4485 21 14 2.8029 0.2732 -5.1149 22 1 2.3867 1.6851 -4.9180 23 1 4.2219 0.2312 -5.5507 24 1 1.9472 -0.3544 -6.1537 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.7517 -0.1583 2.1370 29 1 1.6054 -1.7198 1.2952 30 1 3.9824 -0.4627 0.4316 31 1 5.9630 -2.1005 1.2422 32 1 6.1098 -0.5393 2.0843 33 1 4.8642 -3.9013 3.9381 34 1 5.6398 -4.0936 2.3351 35 1 8.1181 -2.1070 2.3860 36 1 8.1447 -1.6596 4.1193 37 1 2.2490 -1.6318 -1.1526 38 1 3.2571 -2.3939 -4.2397 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662195838.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:45 Heat of formation + Delta-G solvation = -142.179196 kcal Electronic energy + Delta-G solvation = -20576.675234 eV Core-core repulsion = 17225.235717 eV Total energy + Delta-G solvation = -3351.439516 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.05291 -40.57776 -38.62733 -37.87377 -35.27816 -35.06095 -33.57359 -30.69205 -29.95134 -28.43126 -26.66949 -25.54518 -22.62366 -22.28682 -21.67345 -20.92796 -19.32981 -18.52380 -17.88230 -17.47459 -17.28808 -17.02731 -16.62665 -16.32409 -15.62618 -15.34343 -14.95850 -14.80695 -14.56394 -14.32748 -13.81312 -13.62938 -13.54861 -13.25757 -13.01591 -12.89233 -12.79172 -12.48059 -12.28183 -12.17899 -12.11311 -11.67928 -11.61541 -11.54493 -11.33705 -10.98418 -10.73039 -9.91761 -8.99882 -7.90344 -5.18488 0.97945 1.50620 1.53507 1.61053 1.75392 2.26578 2.34023 2.59583 2.97653 3.29917 3.45010 3.64245 3.76123 3.92295 4.02635 4.11229 4.32821 4.44496 4.46465 4.56570 4.67770 4.68355 4.72590 4.79369 4.86518 4.93850 5.09058 5.12676 5.29645 5.47366 5.59581 5.66022 5.73790 6.31118 6.36514 6.70147 7.34782 7.39121 8.11817 8.35949 9.32433 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.020060 B = 0.003981 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.481052 B = 7031.271436 C = 8009.363288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.158 3.842 3 H 0.060 0.940 4 C 0.124 3.876 5 N -0.714 5.714 6 C 0.506 3.494 7 O -0.583 6.583 8 C -0.128 4.128 9 C -0.094 4.094 10 H 0.111 0.889 11 C 0.058 3.942 12 O -0.371 6.371 13 C 0.479 3.521 14 O -0.508 6.508 15 C -0.168 4.168 16 N -0.731 5.731 17 C -0.232 4.232 18 H 0.077 0.923 19 C -0.068 4.068 20 N -0.966 5.966 21 Si 0.963 3.037 22 H -0.267 1.267 23 H -0.295 1.295 24 H -0.303 1.303 25 H 0.042 0.958 26 H 0.040 0.960 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.411 0.589 31 H 0.112 0.888 32 H 0.136 0.864 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.373 0.627 38 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.880 4.701 12.787 14.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.050 3.950 3 H 0.078 0.922 4 C -0.001 4.001 5 N -0.365 5.365 6 C 0.294 3.706 7 O -0.464 6.464 8 C -0.167 4.167 9 C -0.113 4.113 10 H 0.129 0.871 11 C -0.015 4.015 12 O -0.288 6.288 13 C 0.323 3.677 14 O -0.395 6.395 15 C -0.205 4.205 16 N -0.372 5.372 17 C -0.363 4.363 18 H 0.095 0.905 19 C -0.261 4.261 20 N -0.617 5.617 21 Si 0.793 3.207 22 H -0.191 1.191 23 H -0.222 1.222 24 H -0.231 1.231 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.248 0.752 31 H 0.130 0.870 32 H 0.154 0.846 33 H 0.134 0.866 34 H 0.107 0.893 35 H 0.156 0.844 36 H 0.159 0.841 37 H 0.206 0.794 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.904 4.144 13.475 14.927 hybrid contribution 0.031 -0.132 -1.589 1.594 sum 4.935 4.011 11.887 13.481 Atomic orbital electron populations 1.22259 0.97213 1.01043 1.01251 1.20684 0.93325 0.95743 0.85239 0.92199 1.21508 0.80380 1.00204 0.97994 1.46038 1.07899 1.58829 1.23694 1.21125 0.91205 0.76768 0.81543 1.90662 1.71475 1.49628 1.34682 1.21752 0.90214 1.05519 0.99206 1.22182 0.93672 0.94872 1.00589 0.87103 1.24510 0.86726 0.90918 0.99378 1.87041 1.18934 1.53876 1.68976 1.23800 0.83122 0.89687 0.71122 1.90684 1.22876 1.76689 1.49291 1.22990 0.96308 0.93198 1.08023 1.42609 1.78270 1.10343 1.06013 1.19593 1.34343 0.94178 0.88234 0.90481 1.25383 1.03163 0.96629 1.00878 1.69802 1.52600 1.10086 1.29201 0.85230 0.76594 0.78308 0.80527 1.19122 1.22244 1.23061 0.93885 0.94032 0.90878 0.90169 0.93293 0.75229 0.87004 0.84650 0.86618 0.89268 0.84441 0.84077 0.79448 0.94264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.83 9.49 71.98 0.68 -4.14 16 2 C 0.16 5.21 3.05 44.99 0.14 5.34 16 3 H 0.06 1.92 8.08 -2.39 -0.02 1.90 16 4 C 0.12 3.56 5.23 86.38 0.45 4.01 16 5 N -0.71 -18.77 5.39 -463.05 -2.49 -21.26 16 6 C 0.51 12.04 7.64 87.66 0.67 12.71 16 7 O -0.58 -17.22 14.95 -3.02 -0.05 -17.26 16 8 C -0.13 -1.87 5.00 29.85 0.15 -1.72 16 9 C -0.09 -1.38 2.75 -9.75 -0.03 -1.40 16 10 H 0.11 1.62 7.97 -2.39 -0.02 1.60 16 11 C 0.06 1.13 6.67 72.51 0.48 1.62 16 12 O -0.37 -9.15 11.06 -50.17 -0.55 -9.70 16 13 C 0.48 11.16 8.58 71.43 0.61 11.77 16 14 O -0.51 -15.77 18.00 21.63 0.39 -15.38 16 15 C -0.17 -2.14 6.52 30.56 0.20 -1.94 16 16 N -0.73 -31.60 4.56 -322.93 -1.47 -33.07 16 17 C -0.23 -11.36 9.93 84.04 0.83 -10.52 16 18 H 0.08 3.64 7.83 -2.91 -0.02 3.62 16 19 C -0.07 -3.55 5.50 84.86 0.47 -3.09 16 20 N -0.97 -54.63 13.06 21.65 0.28 -54.34 16 21 Si 0.96 42.84 29.55 68.60 2.03 44.87 16 22 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 23 H -0.30 -13.19 7.11 99.48 0.71 -12.48 16 24 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.41 11.00 8.14 -92.71 -0.75 10.25 16 31 H 0.11 1.53 8.01 -2.39 -0.02 1.51 16 32 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.12 2.41 7.67 -2.39 -0.02 2.40 16 34 H 0.09 1.69 7.82 -2.39 -0.02 1.67 16 35 H 0.14 1.26 7.80 -2.39 -0.02 1.24 16 36 H 0.14 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.37 17.85 7.80 -92.71 -0.72 17.13 16 38 H 0.25 13.85 8.31 -92.70 -0.77 13.07 16 Total: -1.00 -67.20 324.68 2.39 -64.81 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: -0.40 Total: 28.71 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 4.66 Total: 12.64 kcal Atomic # 7 Polarization: -105.00 SS G_CDS: -3.69 Total: -108.68 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: -0.21 Total: -42.34 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -67.20 2.39 -64.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662195838.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.373 kcal (2) G-P(sol) polarization free energy of solvation -67.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds