Wall clock time and date at job start Mon Mar 30 2020 02:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47241 * 2 1 4 4 C 1.53001 * 109.47022 * 119.99364 * 2 1 3 5 5 N 1.46499 * 109.47224 * 175.00057 * 4 2 1 6 6 C 1.34781 * 120.00064 * 180.02562 * 5 4 2 7 7 O 1.21287 * 119.99845 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00108 * 180.02562 * 6 5 4 9 9 C 1.53001 * 109.47269 * 179.97438 * 8 6 5 10 10 H 1.09002 * 110.74694 * 51.52982 * 9 8 6 11 11 C 1.54262 * 111.02150 * 287.94166 * 9 8 6 12 12 O 1.45370 * 106.62999 * 226.53678 * 11 9 8 13 13 C 1.34251 * 111.58121 * 357.88425 * 12 11 9 14 14 O 1.20825 * 125.82859 * 199.57532 * 13 12 11 15 15 C 1.51664 * 108.47383 * 19.38468 * 13 12 11 16 16 N 1.46498 * 109.47511 * 239.99457 * 2 1 3 17 17 C 1.36931 * 120.00031 * 84.99898 * 16 2 1 18 18 H 1.08003 * 120.00190 * 0.02562 * 17 16 2 19 19 C 1.38811 * 120.00235 * 180.02562 * 17 16 2 20 20 N 1.31621 * 119.99904 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00275 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47110 * 89.99709 * 21 19 17 23 23 H 1.48498 * 109.47153 * 209.99724 * 21 19 17 24 24 H 1.48494 * 109.47097 * 329.99943 * 21 19 17 25 25 H 1.09004 * 109.46622 * 60.00875 * 1 2 3 26 26 H 1.09003 * 109.46982 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47743 * 300.00420 * 1 2 3 28 28 H 1.09002 * 109.47067 * 55.00038 * 4 2 1 29 29 H 1.09005 * 109.47392 * 295.00337 * 4 2 1 30 30 H 0.96991 * 120.00155 * 0.02562 * 5 4 2 31 31 H 1.09002 * 109.47239 * 59.99560 * 8 6 5 32 32 H 1.08999 * 109.46798 * 299.99593 * 8 6 5 33 33 H 1.09000 * 110.02485 * 345.82515 * 11 9 8 34 34 H 1.09001 * 110.02665 * 107.24361 * 11 9 8 35 35 H 1.09002 * 110.70856 * 213.24956 * 15 13 12 36 36 H 1.08995 * 110.70636 * 90.18454 * 15 13 12 37 37 H 0.97002 * 119.99949 * 265.00363 * 16 2 1 38 38 H 0.97001 * 120.00219 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1730 -1.4290 2.1910 7 8 3.5698 -1.8839 3.1398 8 6 5.6749 -1.5366 2.1310 9 6 6.1848 -2.2579 3.3802 10 1 5.6526 -3.1976 3.5278 11 6 6.0647 -1.3573 4.6269 12 8 7.3319 -1.4526 5.3327 13 6 8.1725 -2.3052 4.7254 14 8 9.1327 -2.8341 5.2334 15 6 7.7109 -2.4971 3.2935 16 7 2.0184 -0.6907 -1.1961 17 6 2.1492 -0.0077 -2.3757 18 1 1.8927 1.0403 -2.4242 19 6 2.6115 -0.6623 -3.5091 20 7 2.9236 -1.9396 -3.4501 21 14 2.7906 0.2696 -5.1181 22 1 4.1533 0.8538 -5.2028 23 1 2.5797 -0.6615 -6.2556 24 1 1.7814 1.3574 -5.1752 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6053 -1.7197 1.2953 29 1 1.7516 -0.1581 2.1371 30 1 3.9824 -0.4622 0.4321 31 1 6.1092 -0.5379 2.0856 32 1 5.9636 -2.0991 1.2430 33 1 5.8817 -0.3258 4.3260 34 1 5.2544 -1.7097 5.2653 35 1 7.9235 -3.5103 2.9525 36 1 8.1791 -1.7645 2.6362 37 1 2.2491 -1.6319 -1.1524 38 1 3.2470 -2.3969 -4.2421 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662195839.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:48 Heat of formation + Delta-G solvation = -120.381784 kcal Electronic energy + Delta-G solvation = -20506.336990 eV Core-core repulsion = 17155.842680 eV Total energy + Delta-G solvation = -3350.494310 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.18952 -39.50629 -37.67072 -36.46650 -34.39501 -33.65147 -31.96438 -29.42545 -28.74154 -27.62957 -25.48522 -23.72869 -21.76335 -21.46220 -20.32036 -19.81005 -17.77095 -17.41522 -16.94587 -16.68725 -16.29119 -15.66692 -15.52061 -14.80791 -14.59135 -14.04034 -13.87356 -13.56980 -13.48499 -13.03599 -12.83020 -12.45196 -12.20310 -12.12459 -12.00296 -11.66484 -11.45138 -11.38797 -10.94910 -10.84443 -10.68005 -10.43582 -10.39478 -10.11230 -9.80976 -9.69904 -9.07824 -8.76466 -7.14199 -5.90923 -3.21517 1.83898 2.75913 3.04319 3.32423 3.34418 3.40164 3.41355 3.72577 4.00289 4.36723 4.45829 4.47260 4.88701 5.03349 5.10966 5.21655 5.31251 5.35873 5.38739 5.45949 5.48207 5.55120 5.77684 5.84487 5.99206 6.09712 6.22629 6.47181 6.58288 6.65552 6.72440 6.94699 7.24584 7.57209 7.78297 8.26523 8.39980 9.38703 9.92801 10.28406 11.30892 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023204 B = 0.003718 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.395944 B = 7529.809955 C = 8433.885395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.159 3.841 3 H 0.053 0.947 4 C 0.114 3.886 5 N -0.710 5.710 6 C 0.508 3.492 7 O -0.556 6.556 8 C -0.134 4.134 9 C -0.104 4.104 10 H 0.109 0.891 11 C 0.065 3.935 12 O -0.354 6.354 13 C 0.488 3.512 14 O -0.460 6.460 15 C -0.186 4.186 16 N -0.724 5.724 17 C -0.245 4.245 18 H 0.071 0.929 19 C -0.009 4.009 20 N -0.930 5.930 21 Si 0.906 3.094 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.412 0.588 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.385 0.615 38 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.881 2.131 11.434 12.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.049 3.951 3 H 0.071 0.929 4 C -0.010 4.010 5 N -0.361 5.361 6 C 0.294 3.706 7 O -0.435 6.435 8 C -0.174 4.174 9 C -0.123 4.123 10 H 0.127 0.873 11 C -0.009 4.009 12 O -0.271 6.271 13 C 0.328 3.672 14 O -0.344 6.344 15 C -0.225 4.225 16 N -0.367 5.367 17 C -0.376 4.376 18 H 0.089 0.911 19 C -0.206 4.206 20 N -0.578 5.578 21 Si 0.737 3.263 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.248 0.752 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.132 0.868 36 H 0.137 0.863 37 H 0.219 0.781 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.925 1.811 12.376 13.442 hybrid contribution 0.164 0.302 -1.659 1.694 sum 5.089 2.112 10.717 12.050 Atomic orbital electron populations 1.22367 0.98300 1.01302 1.00414 1.20510 0.92718 0.95727 0.86154 0.92875 1.21704 0.79456 1.01177 0.98678 1.46006 1.08411 1.58341 1.23319 1.20463 0.89625 0.77962 0.82600 1.90676 1.70456 1.48579 1.33818 1.21708 0.93363 1.03080 0.99269 1.22228 0.94356 1.01166 0.94567 0.87313 1.24083 0.82050 1.01678 0.93084 1.86814 1.27286 1.58867 1.54159 1.23202 0.81251 0.74763 0.87954 1.90719 1.26371 1.44120 1.73145 1.23180 0.96412 1.06718 0.96144 1.42475 1.78098 1.10815 1.05280 1.19219 1.37099 0.93890 0.87359 0.91109 1.24742 1.01923 0.95888 0.98025 1.69658 1.50474 1.08597 1.29066 0.86213 0.77787 0.78626 0.83655 1.21675 1.21778 1.20767 0.92306 0.93200 0.94174 0.91790 0.91788 0.75195 0.88215 0.87344 0.88674 0.87772 0.86788 0.86345 0.78101 0.93406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.49 37.16 0.35 -2.31 16 2 C 0.16 2.75 3.05 -67.93 -0.21 2.54 16 3 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 4 C 0.11 1.74 5.23 -4.04 -0.02 1.72 16 5 N -0.71 -9.99 5.39 -60.29 -0.32 -10.31 16 6 C 0.51 6.59 7.67 -10.99 -0.08 6.51 16 7 O -0.56 -8.71 15.36 5.55 0.09 -8.63 16 8 C -0.13 -1.19 5.00 -27.88 -0.14 -1.33 16 9 C -0.10 -0.90 2.65 -89.06 -0.24 -1.14 16 10 H 0.11 1.03 7.88 -51.93 -0.41 0.62 16 11 C 0.07 0.60 6.82 37.82 0.26 0.86 16 12 O -0.35 -4.10 10.96 -38.91 -0.43 -4.52 16 13 C 0.49 5.67 8.65 36.48 0.32 5.98 16 14 O -0.46 -6.92 18.00 -18.35 -0.33 -7.25 16 15 C -0.19 -1.47 6.50 -26.51 -0.17 -1.64 16 16 N -0.72 -15.95 4.56 -53.43 -0.24 -16.20 16 17 C -0.24 -6.12 9.93 -15.06 -0.15 -6.27 16 18 H 0.07 1.73 7.83 -52.48 -0.41 1.32 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 20 N -0.93 -26.04 13.06 55.49 0.72 -25.32 16 21 Si 0.91 20.91 29.55 -169.99 -5.02 15.89 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.41 5.88 8.14 -40.82 -0.33 5.55 16 31 H 0.10 0.68 7.97 -51.93 -0.41 0.27 16 32 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.10 0.77 7.67 -51.93 -0.40 0.37 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.12 0.72 7.91 -51.93 -0.41 0.31 16 37 H 0.38 9.22 7.80 -40.82 -0.32 8.91 16 38 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 325.40 15.07 4.90 4.90 Total: -1.00 -30.91 325.40 -6.44 -37.36 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -5.63 Total: 9.49 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -0.18 Total: 4.59 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: 0.16 Total: -51.83 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.67 Total: -20.40 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.91 -6.44 -37.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662195839.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.023 kcal (2) G-P(sol) polarization free energy of solvation -30.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds