Wall clock time and date at job start Mon Mar 30 2020 02:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47241 * 2 1 4 4 C 1.53001 * 109.47022 * 119.99364 * 2 1 3 5 5 N 1.46499 * 109.47224 * 175.00057 * 4 2 1 6 6 C 1.34781 * 120.00064 * 180.02562 * 5 4 2 7 7 O 1.21287 * 119.99845 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00108 * 180.02562 * 6 5 4 9 9 C 1.53001 * 109.47269 * 179.97438 * 8 6 5 10 10 H 1.09002 * 110.74694 * 51.52982 * 9 8 6 11 11 C 1.54262 * 111.02150 * 287.94166 * 9 8 6 12 12 O 1.45370 * 106.62999 * 226.53678 * 11 9 8 13 13 C 1.34251 * 111.58121 * 357.88425 * 12 11 9 14 14 O 1.20825 * 125.82859 * 199.57532 * 13 12 11 15 15 C 1.51664 * 108.47383 * 19.38468 * 13 12 11 16 16 N 1.46498 * 109.47511 * 239.99457 * 2 1 3 17 17 C 1.36931 * 120.00031 * 84.99898 * 16 2 1 18 18 H 1.08003 * 120.00190 * 0.02562 * 17 16 2 19 19 C 1.38811 * 120.00235 * 180.02562 * 17 16 2 20 20 N 1.31621 * 119.99904 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00275 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47110 * 89.99709 * 21 19 17 23 23 H 1.48498 * 109.47153 * 209.99724 * 21 19 17 24 24 H 1.48494 * 109.47097 * 329.99943 * 21 19 17 25 25 H 1.09004 * 109.46622 * 60.00875 * 1 2 3 26 26 H 1.09003 * 109.46982 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47743 * 300.00420 * 1 2 3 28 28 H 1.09002 * 109.47067 * 55.00038 * 4 2 1 29 29 H 1.09005 * 109.47392 * 295.00337 * 4 2 1 30 30 H 0.96991 * 120.00155 * 0.02562 * 5 4 2 31 31 H 1.09002 * 109.47239 * 59.99560 * 8 6 5 32 32 H 1.08999 * 109.46798 * 299.99593 * 8 6 5 33 33 H 1.09000 * 110.02485 * 345.82515 * 11 9 8 34 34 H 1.09001 * 110.02665 * 107.24361 * 11 9 8 35 35 H 1.09002 * 110.70856 * 213.24956 * 15 13 12 36 36 H 1.08995 * 110.70636 * 90.18454 * 15 13 12 37 37 H 0.97002 * 119.99949 * 265.00363 * 16 2 1 38 38 H 0.97001 * 120.00219 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1730 -1.4290 2.1910 7 8 3.5698 -1.8839 3.1398 8 6 5.6749 -1.5366 2.1310 9 6 6.1848 -2.2579 3.3802 10 1 5.6526 -3.1976 3.5278 11 6 6.0647 -1.3573 4.6269 12 8 7.3319 -1.4526 5.3327 13 6 8.1725 -2.3052 4.7254 14 8 9.1327 -2.8341 5.2334 15 6 7.7109 -2.4971 3.2935 16 7 2.0184 -0.6907 -1.1961 17 6 2.1492 -0.0077 -2.3757 18 1 1.8927 1.0403 -2.4242 19 6 2.6115 -0.6623 -3.5091 20 7 2.9236 -1.9396 -3.4501 21 14 2.7906 0.2696 -5.1181 22 1 4.1533 0.8538 -5.2028 23 1 2.5797 -0.6615 -6.2556 24 1 1.7814 1.3574 -5.1752 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6053 -1.7197 1.2953 29 1 1.7516 -0.1581 2.1371 30 1 3.9824 -0.4622 0.4321 31 1 6.1092 -0.5379 2.0856 32 1 5.9636 -2.0991 1.2430 33 1 5.8817 -0.3258 4.3260 34 1 5.2544 -1.7097 5.2653 35 1 7.9235 -3.5103 2.9525 36 1 8.1791 -1.7645 2.6362 37 1 2.2491 -1.6319 -1.1524 38 1 3.2470 -2.3969 -4.2421 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662195839.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:48 Heat of formation + Delta-G solvation = -141.532136 kcal Electronic energy + Delta-G solvation = -20507.254138 eV Core-core repulsion = 17155.842680 eV Total energy + Delta-G solvation = -3351.411458 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.04241 -40.57850 -38.65700 -37.87607 -35.27464 -35.06040 -33.57109 -30.69267 -29.97764 -28.49156 -26.67507 -25.53760 -22.58342 -22.34342 -21.67318 -20.85053 -19.32651 -18.51604 -17.85602 -17.71744 -17.20179 -16.89468 -16.73203 -16.20540 -15.72415 -15.47764 -14.99196 -14.71628 -14.48725 -14.22232 -13.84516 -13.73749 -13.54934 -13.18788 -13.08521 -12.89813 -12.74398 -12.47628 -12.43937 -12.16238 -12.13027 -11.67657 -11.62263 -11.46160 -11.30429 -10.96439 -10.73624 -9.92157 -8.99341 -7.89492 -5.17811 0.95801 1.52038 1.54059 1.60793 1.74975 2.23240 2.34030 2.60184 2.96908 3.26797 3.45314 3.63452 3.73711 3.92679 4.02385 4.10614 4.36431 4.42861 4.46009 4.55041 4.68333 4.69384 4.74161 4.78300 4.88593 4.93635 5.09004 5.09753 5.29630 5.47228 5.59718 5.65854 5.77280 6.31729 6.36196 6.70049 7.34666 7.39705 8.12287 8.36595 9.33007 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023204 B = 0.003718 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.395944 B = 7529.809955 C = 8433.885395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.159 3.841 3 H 0.060 0.940 4 C 0.124 3.876 5 N -0.713 5.713 6 C 0.505 3.495 7 O -0.585 6.585 8 C -0.125 4.125 9 C -0.098 4.098 10 H 0.098 0.902 11 C 0.064 3.936 12 O -0.371 6.371 13 C 0.484 3.516 14 O -0.504 6.504 15 C -0.170 4.170 16 N -0.731 5.731 17 C -0.233 4.233 18 H 0.077 0.923 19 C -0.068 4.068 20 N -0.965 5.965 21 Si 0.964 3.036 22 H -0.286 1.286 23 H -0.304 1.304 24 H -0.274 1.274 25 H 0.042 0.958 26 H 0.040 0.960 27 H 0.072 0.928 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.412 0.588 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.127 0.873 36 H 0.146 0.854 37 H 0.373 0.627 38 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.049 3.496 11.327 12.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.050 3.950 3 H 0.078 0.922 4 C -0.001 4.001 5 N -0.364 5.364 6 C 0.293 3.707 7 O -0.466 6.466 8 C -0.164 4.164 9 C -0.117 4.117 10 H 0.116 0.884 11 C -0.009 4.009 12 O -0.288 6.288 13 C 0.328 3.672 14 O -0.391 6.391 15 C -0.207 4.207 16 N -0.372 5.372 17 C -0.365 4.365 18 H 0.095 0.905 19 C -0.260 4.260 20 N -0.616 5.616 21 Si 0.794 3.206 22 H -0.213 1.213 23 H -0.231 1.231 24 H -0.199 1.199 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.248 0.752 31 H 0.147 0.853 32 H 0.140 0.860 33 H 0.130 0.870 34 H 0.115 0.885 35 H 0.145 0.855 36 H 0.164 0.836 37 H 0.206 0.794 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.062 3.227 12.294 13.681 hybrid contribution 0.020 -0.067 -1.517 1.518 sum 5.082 3.159 10.777 12.327 Atomic orbital electron populations 1.22262 0.97248 1.01028 1.01238 1.20679 0.93303 0.95751 0.85244 0.92171 1.21508 0.80396 1.00166 0.98030 1.46029 1.07885 1.58777 1.23717 1.21144 0.91253 0.76722 0.81569 1.90671 1.71509 1.49583 1.34839 1.21725 0.90066 1.04998 0.99629 1.22140 0.94778 1.00562 0.94212 0.88356 1.24194 0.80864 1.02764 0.93119 1.86789 1.28023 1.58742 1.55205 1.23790 0.80416 0.73754 0.89265 1.90692 1.28248 1.45810 1.74309 1.23159 0.95454 1.08368 0.93763 1.42597 1.78278 1.10333 1.06016 1.19549 1.34660 0.94114 0.88191 0.90546 1.25388 1.03176 0.96613 1.00858 1.69797 1.52594 1.09985 1.29229 0.85288 0.77860 0.77364 0.80079 1.21287 1.23110 1.19948 0.93907 0.94048 0.90879 0.93393 0.90131 0.75191 0.85305 0.86033 0.87046 0.88504 0.85497 0.83607 0.79440 0.94242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.85 9.49 71.98 0.68 -4.16 16 2 C 0.16 5.22 3.05 44.99 0.14 5.36 16 3 H 0.06 1.93 8.08 -2.39 -0.02 1.91 16 4 C 0.12 3.57 5.23 86.38 0.45 4.02 16 5 N -0.71 -18.76 5.39 -463.05 -2.49 -21.26 16 6 C 0.51 12.10 7.67 87.65 0.67 12.77 16 7 O -0.58 -17.54 15.36 -3.05 -0.05 -17.59 16 8 C -0.12 -1.82 5.00 29.85 0.15 -1.67 16 9 C -0.10 -1.47 2.65 -9.78 -0.03 -1.50 16 10 H 0.10 1.73 7.88 -2.39 -0.02 1.71 16 11 C 0.06 1.08 6.82 72.41 0.49 1.57 16 12 O -0.37 -8.21 10.96 -52.00 -0.57 -8.78 16 13 C 0.48 10.78 8.65 71.54 0.62 11.40 16 14 O -0.50 -15.17 18.00 21.58 0.39 -14.78 16 15 C -0.17 -2.23 6.50 30.74 0.20 -2.03 16 16 N -0.73 -31.58 4.56 -322.95 -1.47 -33.05 16 17 C -0.23 -11.42 9.93 84.03 0.83 -10.59 16 18 H 0.08 3.61 7.83 -2.91 -0.02 3.58 16 19 C -0.07 -3.53 5.50 84.86 0.47 -3.06 16 20 N -0.97 -54.30 13.06 21.65 0.28 -54.02 16 21 Si 0.96 42.65 29.55 68.60 2.03 44.68 16 22 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 30 H 0.41 10.96 8.14 -92.71 -0.75 10.21 16 31 H 0.13 1.20 7.97 -2.39 -0.02 1.18 16 32 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.11 1.51 7.67 -2.39 -0.02 1.50 16 34 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.15 1.19 7.91 -2.39 -0.02 1.17 16 37 H 0.37 17.84 7.80 -92.71 -0.72 17.12 16 38 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -66.71 325.40 2.40 -64.32 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: -0.40 Total: 28.37 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 4.68 Total: 12.11 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -3.69 Total: -108.32 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -0.23 Total: -41.15 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -66.71 2.40 -64.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662195839.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.216 kcal (2) G-P(sol) polarization free energy of solvation -66.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds