Wall clock time and date at job start Mon Mar 30 2020 02:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47257 * 2 1 4 4 C 1.53002 * 109.47179 * 240.00161 * 2 1 3 5 5 N 1.46498 * 109.47350 * 185.00048 * 4 2 1 6 6 C 1.34776 * 119.99989 * 180.02562 * 5 4 2 7 7 O 1.21274 * 120.00437 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99537 * 179.97438 * 6 5 4 9 9 C 1.53009 * 109.46694 * 180.02562 * 8 6 5 10 10 H 1.08999 * 110.76933 * 305.69947 * 9 8 6 11 11 C 1.54569 * 110.86773 * 69.22738 * 9 8 6 12 12 O 1.46154 * 104.28921 * 144.85946 * 11 9 8 13 13 C 1.34067 * 110.02558 * 329.67128 * 12 11 9 14 14 O 1.20829 * 125.09033 * 200.68447 * 13 12 11 15 15 C 1.51324 * 109.81390 * 20.68087 * 13 12 11 16 16 N 1.46499 * 109.47136 * 120.00369 * 2 1 3 17 17 C 1.36931 * 120.00122 * 274.99967 * 16 2 1 18 18 H 1.08002 * 120.00098 * 0.02562 * 17 16 2 19 19 C 1.38812 * 120.00429 * 180.02562 * 17 16 2 20 20 N 1.31624 * 119.99535 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00187 * 180.27849 * 19 17 16 22 22 H 1.48497 * 109.47173 * 179.72427 * 21 19 17 23 23 H 1.48506 * 109.46866 * 299.71963 * 21 19 17 24 24 H 1.48501 * 109.47438 * 59.72083 * 21 19 17 25 25 H 1.08993 * 109.47456 * 299.99448 * 1 2 3 26 26 H 1.09005 * 109.47368 * 59.99835 * 1 2 3 27 27 H 1.09000 * 109.47077 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47354 * 305.00151 * 4 2 1 29 29 H 1.09002 * 109.46790 * 64.99892 * 4 2 1 30 30 H 0.97003 * 119.99785 * 0.02562 * 5 4 2 31 31 H 1.08996 * 109.47438 * 299.99577 * 8 6 5 32 32 H 1.09002 * 109.47490 * 60.00220 * 8 6 5 33 33 H 1.08997 * 110.43579 * 263.75035 * 11 9 8 34 34 H 1.08992 * 110.44212 * 26.26836 * 11 9 8 35 35 H 1.08994 * 110.37121 * 238.84632 * 15 13 12 36 36 H 1.09002 * 110.36644 * 116.52050 * 15 13 12 37 37 H 0.97001 * 119.99790 * 94.99484 * 16 2 1 38 38 H 0.97005 * 119.99717 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.1730 -1.4282 -2.1913 7 8 3.5700 -1.8832 -3.1400 8 6 5.6750 -1.5358 -2.1311 9 6 6.1851 -2.2561 -3.3810 10 1 5.6876 -3.2183 -3.5027 11 6 5.9979 -1.3765 -4.6382 12 8 7.1605 -1.6831 -5.4692 13 6 8.2061 -2.0061 -4.6948 14 8 9.3639 -1.9631 -5.0376 15 6 7.7190 -2.4325 -3.3270 16 7 2.0183 -0.6907 1.1961 17 6 2.1491 -0.0077 2.3757 18 1 1.8919 1.0401 2.4244 19 6 2.6123 -0.6619 3.5090 20 7 2.9253 -1.9390 3.4497 21 14 2.7833 0.2679 5.1200 22 1 3.2878 -0.6517 6.1712 23 1 3.7393 1.3908 4.9443 24 1 1.4591 0.8040 5.5251 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6054 -1.7198 -1.2953 29 1 1.7516 -0.1582 -2.1370 30 1 3.9824 -0.4628 -0.4316 31 1 6.1093 -0.5372 -2.0851 32 1 5.9637 -2.0989 -1.2436 33 1 5.0756 -1.6422 -5.1547 34 1 5.9929 -0.3209 -4.3670 35 1 8.1475 -1.7930 -2.5553 36 1 7.9746 -3.4757 -3.1415 37 1 2.2489 -1.6319 1.1525 38 1 3.2487 -2.3963 4.2418 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662195840.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:51 Heat of formation + Delta-G solvation = -120.759141 kcal Electronic energy + Delta-G solvation = -20521.242403 eV Core-core repulsion = 17170.731730 eV Total energy + Delta-G solvation = -3350.510673 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.19385 -39.51049 -37.63559 -36.46422 -34.39555 -33.65205 -31.96351 -29.40655 -28.72913 -27.55843 -25.47946 -23.72670 -21.74678 -21.46812 -20.32576 -19.87509 -17.77649 -17.37276 -16.93323 -16.51295 -16.38740 -15.71994 -15.53135 -14.82316 -14.37522 -14.11576 -13.84463 -13.79474 -13.40467 -13.01977 -12.77248 -12.44682 -12.19778 -12.11393 -12.00074 -11.55357 -11.44315 -11.39859 -10.93404 -10.83888 -10.76674 -10.45652 -10.41404 -10.12588 -9.80497 -9.69746 -9.07087 -8.76488 -7.14139 -5.90670 -3.21297 1.86095 2.75768 3.08488 3.32334 3.34644 3.40028 3.40655 3.73974 4.05266 4.34053 4.46555 4.49551 4.89719 5.02351 5.11525 5.19346 5.30606 5.36575 5.38760 5.48025 5.48289 5.55672 5.79599 5.84554 5.99145 6.09740 6.22644 6.47227 6.55126 6.65545 6.72423 6.94694 7.25196 7.56869 7.78260 8.26818 8.39844 9.38891 9.92964 10.28602 11.31065 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.022854 B = 0.003748 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.855566 B = 7468.483435 C = 8389.829422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.159 3.841 3 H 0.053 0.947 4 C 0.114 3.886 5 N -0.710 5.710 6 C 0.508 3.492 7 O -0.556 6.556 8 C -0.136 4.136 9 C -0.104 4.104 10 H 0.109 0.891 11 C 0.063 3.937 12 O -0.351 6.351 13 C 0.484 3.516 14 O -0.464 6.464 15 C -0.186 4.186 16 N -0.724 5.724 17 C -0.246 4.246 18 H 0.070 0.930 19 C -0.009 4.009 20 N -0.930 5.930 21 Si 0.907 3.093 22 H -0.291 1.291 23 H -0.286 1.286 24 H -0.286 1.286 25 H 0.058 0.942 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.412 0.588 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.123 0.877 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.385 0.615 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.577 1.404 -11.602 12.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.049 3.951 3 H 0.071 0.929 4 C -0.010 4.010 5 N -0.361 5.361 6 C 0.294 3.706 7 O -0.435 6.435 8 C -0.176 4.176 9 C -0.123 4.123 10 H 0.127 0.873 11 C -0.011 4.011 12 O -0.267 6.267 13 C 0.325 3.675 14 O -0.348 6.348 15 C -0.224 4.224 16 N -0.366 5.366 17 C -0.377 4.377 18 H 0.088 0.912 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.212 1.212 24 H -0.213 1.213 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.248 0.752 31 H 0.116 0.884 32 H 0.127 0.873 33 H 0.141 0.859 34 H 0.102 0.898 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.219 0.781 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.681 1.244 -12.500 13.406 hybrid contribution 0.165 0.276 1.659 1.690 sum 4.846 1.520 -10.841 11.972 Atomic orbital electron populations 1.22367 0.98303 1.01298 1.00409 1.20510 0.92716 0.95729 0.86160 0.92884 1.21704 0.79454 1.01177 0.98677 1.46011 1.08416 1.58368 1.23278 1.20452 0.89606 0.77941 0.82601 1.90665 1.70467 1.48580 1.33825 1.21719 0.93381 1.03062 0.99395 1.22250 0.94054 1.01579 0.94462 0.87295 1.24393 0.86733 0.99693 0.90253 1.87074 1.22186 1.79965 1.37501 1.23130 0.84723 0.73279 0.86397 1.90713 1.16027 1.49959 1.78125 1.23008 0.96294 1.05995 0.97097 1.42465 1.78120 1.10803 1.05261 1.19176 1.37178 0.93911 0.87405 0.91162 1.24740 1.01877 0.95905 0.98011 1.69652 1.50394 1.08606 1.29154 0.86287 0.77823 0.78584 0.83555 1.21696 1.21228 1.21259 0.92307 0.94184 0.93202 0.91779 0.91790 0.75189 0.88357 0.87338 0.85946 0.89760 0.86603 0.86494 0.78099 0.93355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.49 37.16 0.35 -2.30 16 2 C 0.16 2.75 3.05 -67.93 -0.21 2.54 16 3 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 4 C 0.11 1.74 5.23 -4.04 -0.02 1.72 16 5 N -0.71 -9.98 5.39 -60.29 -0.32 -10.31 16 6 C 0.51 6.57 7.64 -10.99 -0.08 6.49 16 7 O -0.56 -8.61 14.96 5.56 0.08 -8.53 16 8 C -0.14 -1.20 5.00 -27.88 -0.14 -1.34 16 9 C -0.10 -0.90 2.75 -89.00 -0.24 -1.14 16 10 H 0.11 1.01 7.97 -51.93 -0.41 0.59 16 11 C 0.06 0.59 6.67 37.98 0.25 0.84 16 12 O -0.35 -4.12 11.06 -38.48 -0.43 -4.55 16 13 C 0.48 5.63 8.58 36.31 0.31 5.94 16 14 O -0.46 -6.99 18.00 -18.41 -0.33 -7.33 16 15 C -0.19 -1.47 6.52 -26.79 -0.17 -1.64 16 16 N -0.72 -15.96 4.56 -53.43 -0.24 -16.20 16 17 C -0.25 -6.16 9.93 -15.06 -0.15 -6.31 16 18 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 20 N -0.93 -26.04 13.06 55.49 0.72 -25.32 16 21 Si 0.91 20.93 29.55 -169.99 -5.02 15.91 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.41 5.90 8.14 -40.82 -0.33 5.57 16 31 H 0.10 0.69 8.01 -51.93 -0.42 0.27 16 32 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.12 1.19 7.68 -51.93 -0.40 0.79 16 34 H 0.08 0.68 7.82 -51.93 -0.41 0.27 16 35 H 0.12 0.74 7.80 -51.93 -0.40 0.34 16 36 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.38 9.22 7.80 -40.82 -0.32 8.90 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 LS Contribution 324.68 15.07 4.89 4.89 Total: -1.00 -30.87 324.68 -6.46 -37.33 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -5.61 Total: 9.63 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -0.20 Total: 4.47 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: 0.16 Total: -51.83 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.67 Total: -20.40 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.87 -6.46 -37.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662195840.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.425 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds