Wall clock time and date at job start Mon Mar 30 2020 02:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47257 * 2 1 4 4 C 1.53002 * 109.47179 * 240.00161 * 2 1 3 5 5 N 1.46498 * 109.47350 * 185.00048 * 4 2 1 6 6 C 1.34776 * 119.99989 * 180.02562 * 5 4 2 7 7 O 1.21274 * 120.00437 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99537 * 179.97438 * 6 5 4 9 9 C 1.53009 * 109.46694 * 180.02562 * 8 6 5 10 10 H 1.08999 * 110.76933 * 305.69947 * 9 8 6 11 11 C 1.54569 * 110.86773 * 69.22738 * 9 8 6 12 12 O 1.46154 * 104.28921 * 144.85946 * 11 9 8 13 13 C 1.34067 * 110.02558 * 329.67128 * 12 11 9 14 14 O 1.20829 * 125.09033 * 200.68447 * 13 12 11 15 15 C 1.51324 * 109.81390 * 20.68087 * 13 12 11 16 16 N 1.46499 * 109.47136 * 120.00369 * 2 1 3 17 17 C 1.36931 * 120.00122 * 274.99967 * 16 2 1 18 18 H 1.08002 * 120.00098 * 0.02562 * 17 16 2 19 19 C 1.38812 * 120.00429 * 180.02562 * 17 16 2 20 20 N 1.31624 * 119.99535 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00187 * 180.27849 * 19 17 16 22 22 H 1.48497 * 109.47173 * 179.72427 * 21 19 17 23 23 H 1.48506 * 109.46866 * 299.71963 * 21 19 17 24 24 H 1.48501 * 109.47438 * 59.72083 * 21 19 17 25 25 H 1.08993 * 109.47456 * 299.99448 * 1 2 3 26 26 H 1.09005 * 109.47368 * 59.99835 * 1 2 3 27 27 H 1.09000 * 109.47077 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47354 * 305.00151 * 4 2 1 29 29 H 1.09002 * 109.46790 * 64.99892 * 4 2 1 30 30 H 0.97003 * 119.99785 * 0.02562 * 5 4 2 31 31 H 1.08996 * 109.47438 * 299.99577 * 8 6 5 32 32 H 1.09002 * 109.47490 * 60.00220 * 8 6 5 33 33 H 1.08997 * 110.43579 * 263.75035 * 11 9 8 34 34 H 1.08992 * 110.44212 * 26.26836 * 11 9 8 35 35 H 1.08994 * 110.37121 * 238.84632 * 15 13 12 36 36 H 1.09002 * 110.36644 * 116.52050 * 15 13 12 37 37 H 0.97001 * 119.99790 * 94.99484 * 16 2 1 38 38 H 0.97005 * 119.99717 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.1730 -1.4282 -2.1913 7 8 3.5700 -1.8832 -3.1400 8 6 5.6750 -1.5358 -2.1311 9 6 6.1851 -2.2561 -3.3810 10 1 5.6876 -3.2183 -3.5027 11 6 5.9979 -1.3765 -4.6382 12 8 7.1605 -1.6831 -5.4692 13 6 8.2061 -2.0061 -4.6948 14 8 9.3639 -1.9631 -5.0376 15 6 7.7190 -2.4325 -3.3270 16 7 2.0183 -0.6907 1.1961 17 6 2.1491 -0.0077 2.3757 18 1 1.8919 1.0401 2.4244 19 6 2.6123 -0.6619 3.5090 20 7 2.9253 -1.9390 3.4497 21 14 2.7833 0.2679 5.1200 22 1 3.2878 -0.6517 6.1712 23 1 3.7393 1.3908 4.9443 24 1 1.4591 0.8040 5.5251 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6054 -1.7198 -1.2953 29 1 1.7516 -0.1582 -2.1370 30 1 3.9824 -0.4628 -0.4316 31 1 6.1093 -0.5372 -2.0851 32 1 5.9637 -2.0989 -1.2436 33 1 5.0756 -1.6422 -5.1547 34 1 5.9929 -0.3209 -4.3670 35 1 8.1475 -1.7930 -2.5553 36 1 7.9746 -3.4757 -3.1415 37 1 2.2489 -1.6319 1.1525 38 1 3.2487 -2.3963 4.2418 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662195840.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:51 Heat of formation + Delta-G solvation = -141.829256 kcal Electronic energy + Delta-G solvation = -20522.156071 eV Core-core repulsion = 17170.731730 eV Total energy + Delta-G solvation = -3351.424342 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.04983 -40.57871 -38.62162 -37.87105 -35.27472 -35.05916 -33.57049 -30.68861 -29.95388 -28.42002 -26.66608 -25.53526 -22.62004 -22.28467 -21.67174 -20.92397 -19.33240 -18.50836 -17.87638 -17.48103 -17.29019 -16.93881 -16.76863 -16.19522 -15.68846 -15.32544 -14.97902 -14.84205 -14.56288 -14.16420 -13.88237 -13.69645 -13.53407 -13.17213 -13.08419 -12.87526 -12.72344 -12.47041 -12.28535 -12.21522 -12.17328 -11.67333 -11.62068 -11.53202 -11.33124 -10.95641 -10.72976 -9.91808 -8.99325 -7.89386 -5.17719 0.98456 1.52781 1.54178 1.59628 1.75162 2.26762 2.33956 2.60257 2.98139 3.30674 3.45336 3.63431 3.76272 3.92873 4.02640 4.11705 4.31671 4.43774 4.47015 4.55603 4.68086 4.68416 4.75451 4.78374 4.88919 4.93966 5.09006 5.11903 5.29643 5.47269 5.59370 5.65995 5.74131 6.31710 6.36948 6.70110 7.34703 7.39715 8.12384 8.36741 9.32873 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.022854 B = 0.003748 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.855566 B = 7468.483435 C = 8389.829422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.159 3.841 3 H 0.060 0.940 4 C 0.124 3.876 5 N -0.714 5.714 6 C 0.506 3.494 7 O -0.583 6.583 8 C -0.127 4.127 9 C -0.097 4.097 10 H 0.102 0.898 11 C 0.062 3.938 12 O -0.370 6.370 13 C 0.482 3.518 14 O -0.507 6.507 15 C -0.170 4.170 16 N -0.731 5.731 17 C -0.235 4.235 18 H 0.076 0.924 19 C -0.067 4.067 20 N -0.965 5.965 21 Si 0.964 3.036 22 H -0.302 1.302 23 H -0.276 1.276 24 H -0.285 1.285 25 H 0.042 0.958 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.411 0.589 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.374 0.626 38 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.719 2.504 -11.553 12.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.050 3.950 3 H 0.078 0.922 4 C -0.001 4.001 5 N -0.364 5.364 6 C 0.294 3.706 7 O -0.464 6.464 8 C -0.166 4.166 9 C -0.117 4.117 10 H 0.120 0.880 11 C -0.012 4.012 12 O -0.287 6.287 13 C 0.326 3.674 14 O -0.395 6.395 15 C -0.208 4.208 16 N -0.372 5.372 17 C -0.367 4.367 18 H 0.094 0.906 19 C -0.260 4.260 20 N -0.616 5.616 21 Si 0.794 3.206 22 H -0.228 1.228 23 H -0.202 1.202 24 H -0.212 1.212 25 H 0.061 0.939 26 H 0.091 0.909 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.248 0.752 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.118 0.882 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.206 0.794 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.789 2.385 -12.479 13.577 hybrid contribution 0.022 -0.027 1.530 1.530 sum 4.810 2.359 -10.949 12.190 Atomic orbital electron populations 1.22260 0.97241 1.01039 1.01227 1.20678 0.93309 0.95734 0.85271 0.92236 1.21507 0.80381 1.00187 0.98007 1.46038 1.07897 1.58832 1.23682 1.21120 0.91201 0.76729 0.81587 1.90660 1.71485 1.49523 1.34775 1.21739 0.90145 1.04895 0.99847 1.22167 0.94483 1.01052 0.93951 0.88015 1.24510 0.85626 1.00765 0.90256 1.87044 1.22881 1.79874 1.38867 1.23694 0.84055 0.72157 0.87519 1.90688 1.17707 1.51851 1.79214 1.22981 0.95299 1.07388 0.95084 1.42585 1.78307 1.10324 1.05990 1.19518 1.34779 0.94165 0.88256 0.90578 1.25386 1.03107 0.96634 1.00839 1.69793 1.52495 1.09982 1.29287 0.85363 0.77677 0.77437 0.80122 1.22836 1.20203 1.21210 0.93925 0.90885 0.94025 0.93330 0.90131 0.75227 0.85662 0.86014 0.86645 0.88199 0.84261 0.84805 0.79428 0.94229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.85 9.49 71.98 0.68 -4.16 16 2 C 0.16 5.23 3.05 44.99 0.14 5.36 16 3 H 0.06 1.92 8.08 -2.39 -0.02 1.90 16 4 C 0.12 3.57 5.23 86.38 0.45 4.02 16 5 N -0.71 -18.81 5.39 -463.06 -2.49 -21.30 16 6 C 0.51 12.08 7.64 87.66 0.67 12.75 16 7 O -0.58 -17.26 14.96 -3.01 -0.05 -17.31 16 8 C -0.13 -1.87 5.00 29.85 0.15 -1.72 16 9 C -0.10 -1.45 2.75 -9.75 -0.03 -1.47 16 10 H 0.10 1.70 7.97 -2.39 -0.02 1.68 16 11 C 0.06 1.05 6.67 72.52 0.48 1.53 16 12 O -0.37 -8.39 11.06 -50.19 -0.56 -8.95 16 13 C 0.48 10.69 8.58 71.43 0.61 11.31 16 14 O -0.51 -15.17 18.00 21.63 0.39 -14.78 16 15 C -0.17 -2.23 6.52 30.56 0.20 -2.03 16 16 N -0.73 -31.62 4.56 -322.96 -1.47 -33.10 16 17 C -0.24 -11.55 9.93 84.03 0.83 -10.72 16 18 H 0.08 3.59 7.83 -2.91 -0.02 3.57 16 19 C -0.07 -3.49 5.50 84.86 0.47 -3.03 16 20 N -0.97 -54.28 13.06 21.65 0.28 -54.00 16 21 Si 0.96 42.70 29.55 68.60 2.03 44.72 16 22 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 23 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 25 H 0.04 1.43 8.14 -2.39 -0.02 1.42 16 26 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 27 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.41 11.03 8.14 -92.71 -0.75 10.28 16 31 H 0.13 1.24 8.01 -2.39 -0.02 1.22 16 32 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.12 2.15 7.68 -2.39 -0.02 2.13 16 34 H 0.10 1.38 7.82 -2.39 -0.02 1.36 16 35 H 0.14 1.25 7.80 -2.39 -0.02 1.24 16 36 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.37 17.85 7.80 -92.71 -0.72 17.13 16 38 H 0.25 13.84 8.31 -92.70 -0.77 13.07 16 Total: -1.00 -66.48 324.68 2.39 -64.09 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: -0.40 Total: 28.79 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 4.66 Total: 11.84 kcal Atomic # 7 Polarization: -104.71 SS G_CDS: -3.69 Total: -108.40 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -0.21 Total: -41.04 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -66.48 2.39 -64.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662195840.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.744 kcal (2) G-P(sol) polarization free energy of solvation -66.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds