Wall clock time and date at job start Mon Mar 30 2020 01:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.47289 * 304.99525 * 3 2 1 5 5 C 1.53005 * 109.47452 * 184.99601 * 3 2 1 6 6 N 1.46501 * 109.47085 * 184.99949 * 5 3 2 7 7 C 1.34776 * 119.99681 * 180.02562 * 6 5 3 8 8 O 1.21738 * 120.00034 * 0.02562 * 7 6 5 9 9 C 1.46371 * 120.00153 * 179.97438 * 7 6 5 10 10 C 1.33976 * 119.22921 * 359.73083 * 9 7 6 11 11 O 1.35007 * 121.68865 * 180.11881 * 10 9 7 12 12 C 1.43245 * 116.82711 * 343.31951 * 11 10 9 13 13 C 1.53548 * 108.08696 * 45.25201 * 12 11 10 14 14 O 1.36211 * 119.23641 * 179.97438 * 9 7 6 15 15 N 1.46506 * 109.47289 * 64.99653 * 3 2 1 16 16 C 1.36936 * 119.99838 * 275.00217 * 15 3 2 17 17 H 1.07999 * 120.00085 * 0.02562 * 16 15 3 18 18 C 1.38815 * 119.99824 * 179.97438 * 16 15 3 19 19 N 1.31616 * 119.99954 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99939 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46941 * 90.00290 * 20 18 16 22 22 H 1.48500 * 109.47176 * 210.00256 * 20 18 16 23 23 H 1.48494 * 109.47445 * 330.00360 * 20 18 16 24 24 H 1.09004 * 109.47031 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47281 * 300.00513 * 1 2 3 26 26 H 1.09006 * 109.46596 * 60.00412 * 1 2 3 27 27 H 1.09004 * 109.47686 * 239.99815 * 2 1 3 28 28 H 1.09002 * 109.46818 * 120.00038 * 2 1 3 29 29 H 1.09000 * 109.46872 * 305.00625 * 5 3 2 30 30 H 1.09001 * 109.46455 * 65.00085 * 5 3 2 31 31 H 0.96998 * 120.00018 * 0.02562 * 6 5 3 32 32 H 1.08000 * 119.15878 * 0.38900 * 10 9 7 33 33 H 1.08993 * 109.73735 * 285.60223 * 12 11 10 34 34 H 1.09004 * 109.73751 * 164.90024 * 12 11 10 35 35 H 1.09006 * 109.74981 * 182.22115 * 13 12 11 36 36 H 1.09002 * 109.79710 * 61.49898 * 13 12 11 37 37 H 0.97000 * 119.99812 * 94.99561 * 15 3 2 38 38 H 0.97000 * 120.00432 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4443 -0.1256 6 7 4.0631 2.8168 -0.0059 7 6 5.3857 3.0630 -0.0867 8 8 6.1663 2.1450 -0.2596 9 6 5.8835 4.4343 0.0324 10 6 5.0103 5.4337 0.2161 11 8 5.4145 6.7168 0.3299 12 6 6.8014 6.9348 0.6143 13 6 7.6256 6.0179 -0.3009 14 8 7.2233 4.6653 -0.0511 15 7 1.6524 2.0975 1.2518 16 6 0.4156 2.6735 1.3687 17 1 -0.2742 2.6446 0.5382 18 6 0.0482 3.2938 2.5550 19 7 0.8887 3.3286 3.5672 20 14 -1.6387 4.0801 2.7142 21 1 -2.6057 3.0774 3.2286 22 1 -1.5641 5.2250 3.6571 23 1 -2.0873 4.5632 1.3836 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9954 0.8310 0.6660 30 1 3.8499 1.0377 -1.0959 31 1 3.4411 3.5483 0.1316 32 1 3.9563 5.2066 0.2790 33 1 7.0056 6.6936 1.6574 34 1 7.0579 7.9762 0.4196 35 1 8.6866 6.1334 -0.0792 36 1 7.4375 6.2718 -1.3441 37 1 2.2719 2.1231 1.9978 38 1 0.6322 3.7623 4.3960 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715045872.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:13 Heat of formation + Delta-G solvation = -81.949420 kcal Electronic energy + Delta-G solvation = -21150.678199 eV Core-core repulsion = 17801.850441 eV Total energy + Delta-G solvation = -3348.827757 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.04713 -39.10481 -37.09129 -36.52632 -33.89832 -32.54036 -31.91102 -29.84183 -29.15452 -27.41133 -25.38751 -23.79962 -22.71730 -21.35484 -20.10000 -19.29309 -18.33048 -18.27660 -17.19844 -16.36201 -15.62057 -15.38221 -15.04385 -14.86160 -14.60575 -14.21282 -14.08312 -13.86114 -13.47953 -13.13495 -12.96973 -12.68827 -12.29930 -12.08818 -11.45546 -11.11170 -10.97726 -10.92064 -10.79020 -10.67602 -10.44281 -10.21857 -10.03702 -9.65883 -9.55571 -8.98762 -8.74719 -8.13988 -7.07005 -5.84252 -3.13946 1.43139 2.76232 3.12320 3.38137 3.44126 3.45786 3.49221 3.95324 4.18862 4.51906 4.69703 4.78747 4.87100 5.17080 5.22687 5.35049 5.36999 5.41961 5.54252 5.87930 5.89710 5.94526 5.95692 6.15162 6.40686 6.50995 6.55854 6.58856 6.71054 6.85198 7.00572 7.22874 7.30588 7.64131 7.86726 8.32795 8.49202 9.44937 9.99440 10.35498 11.37381 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.016892 B = 0.005565 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.204953 B = 5030.461554 C = 6376.928008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.162 3.838 4 H 0.055 0.945 5 C 0.117 3.883 6 N -0.705 5.705 7 C 0.573 3.427 8 O -0.538 6.538 9 C -0.074 4.074 10 C 0.013 3.987 11 O -0.299 6.299 12 C 0.013 3.987 13 C 0.019 3.981 14 O -0.287 6.287 15 N -0.722 5.722 16 C -0.239 4.239 17 H 0.074 0.926 18 C -0.010 4.010 19 N -0.928 5.928 20 Si 0.903 3.097 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 H 0.032 0.968 25 H 0.084 0.916 26 H 0.040 0.960 27 H 0.044 0.956 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.408 0.592 32 H 0.185 0.815 33 H 0.081 0.919 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.075 0.925 37 H 0.385 0.615 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.042 4.932 -7.933 13.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.073 0.927 5 C -0.007 4.007 6 N -0.359 5.359 7 C 0.359 3.641 8 O -0.417 6.417 9 C -0.122 4.122 10 C -0.053 4.053 11 O -0.211 6.211 12 C -0.063 4.063 13 C -0.057 4.057 14 O -0.201 6.201 15 N -0.365 5.365 16 C -0.370 4.370 17 H 0.092 0.908 18 C -0.207 4.207 19 N -0.576 5.576 20 Si 0.734 3.266 21 H -0.218 1.218 22 H -0.219 1.219 23 H -0.208 1.208 24 H 0.051 0.949 25 H 0.103 0.897 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.246 0.754 32 H 0.202 0.798 33 H 0.100 0.900 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.094 0.906 37 H 0.219 0.781 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.466 4.399 -8.070 13.194 hybrid contribution -0.962 0.891 0.593 1.439 sum 8.503 5.290 -7.477 12.498 Atomic orbital electron populations 1.21770 0.95698 0.99662 1.03240 1.22063 0.96977 0.98281 1.00124 1.20590 0.89743 0.92975 0.91506 0.92687 1.21730 0.95655 0.81831 1.01461 1.45798 1.05967 1.11245 1.72893 1.17074 0.82759 0.86514 0.77732 1.90808 1.55873 1.45449 1.49547 1.20426 0.84473 0.94714 1.12608 1.23342 0.99569 0.82544 0.99886 1.86113 1.26418 1.23567 1.85039 1.23716 0.80526 1.01861 1.00188 1.23633 1.00743 0.81642 0.99725 1.86414 1.18493 1.27429 1.87794 1.42482 1.16815 1.65884 1.11303 1.19206 0.91964 1.27811 0.98035 0.90843 1.24736 0.98021 1.01550 0.96366 1.69658 1.35129 1.48855 1.03980 0.86266 0.84233 0.78788 0.77343 1.21757 1.21866 1.20751 0.94859 0.89669 0.94106 0.93768 0.92453 0.91481 0.91514 0.75394 0.79837 0.90032 0.86273 0.86295 0.90647 0.78054 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.18 37.16 0.34 -2.21 16 2 C -0.13 -2.25 5.61 -26.73 -0.15 -2.40 16 3 C 0.16 2.91 2.59 -67.93 -0.18 2.74 16 4 H 0.06 0.99 8.08 -51.93 -0.42 0.57 16 5 C 0.12 1.97 5.23 -4.04 -0.02 1.95 16 6 N -0.70 -11.85 5.32 -61.71 -0.33 -12.18 16 7 C 0.57 10.41 7.73 -12.99 -0.10 10.31 16 8 O -0.54 -11.53 16.92 -10.06 -0.17 -11.70 16 9 C -0.07 -1.18 6.61 -37.81 -0.25 -1.43 16 10 C 0.01 0.19 10.58 29.23 0.31 0.49 16 11 O -0.30 -3.93 10.47 -30.85 -0.32 -4.25 16 12 C 0.01 0.12 7.30 37.44 0.27 0.39 16 13 C 0.02 0.19 7.31 37.44 0.27 0.46 16 14 O -0.29 -4.46 10.28 -45.75 -0.47 -4.93 16 15 N -0.72 -16.00 4.51 -53.42 -0.24 -16.24 16 16 C -0.24 -5.91 7.75 -15.06 -0.12 -6.02 16 17 H 0.07 1.77 7.32 -52.49 -0.38 1.39 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 19 N -0.93 -26.28 13.06 55.49 0.72 -25.55 16 20 Si 0.90 21.14 29.55 -169.99 -5.02 16.12 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.08 1.76 5.99 -51.93 -0.31 1.45 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.41 6.66 5.98 -40.82 -0.24 6.42 16 32 H 0.19 2.50 6.08 -52.49 -0.32 2.18 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.39 9.41 7.80 -40.82 -0.32 9.09 16 38 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 317.79 15.07 4.79 4.79 Total: -1.00 -31.26 317.79 -6.11 -37.37 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -5.36 Total: 12.65 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 0.29 Total: 3.92 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.16 Total: -53.97 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.96 Total: -20.88 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.26 -6.11 -37.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715045872.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.576 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds