Wall clock time and date at job start Mon Mar 30 2020 01:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.47289 * 304.99525 * 3 2 1 5 5 C 1.53005 * 109.47452 * 184.99601 * 3 2 1 6 6 N 1.46501 * 109.47085 * 184.99949 * 5 3 2 7 7 C 1.34776 * 119.99681 * 180.02562 * 6 5 3 8 8 O 1.21738 * 120.00034 * 0.02562 * 7 6 5 9 9 C 1.46371 * 120.00153 * 179.97438 * 7 6 5 10 10 C 1.33976 * 119.22921 * 359.73083 * 9 7 6 11 11 O 1.35007 * 121.68865 * 180.11881 * 10 9 7 12 12 C 1.43245 * 116.82711 * 343.31951 * 11 10 9 13 13 C 1.53548 * 108.08696 * 45.25201 * 12 11 10 14 14 O 1.36211 * 119.23641 * 179.97438 * 9 7 6 15 15 N 1.46506 * 109.47289 * 64.99653 * 3 2 1 16 16 C 1.36936 * 119.99838 * 275.00217 * 15 3 2 17 17 H 1.07999 * 120.00085 * 0.02562 * 16 15 3 18 18 C 1.38815 * 119.99824 * 179.97438 * 16 15 3 19 19 N 1.31616 * 119.99954 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99939 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46941 * 90.00290 * 20 18 16 22 22 H 1.48500 * 109.47176 * 210.00256 * 20 18 16 23 23 H 1.48494 * 109.47445 * 330.00360 * 20 18 16 24 24 H 1.09004 * 109.47031 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47281 * 300.00513 * 1 2 3 26 26 H 1.09006 * 109.46596 * 60.00412 * 1 2 3 27 27 H 1.09004 * 109.47686 * 239.99815 * 2 1 3 28 28 H 1.09002 * 109.46818 * 120.00038 * 2 1 3 29 29 H 1.09000 * 109.46872 * 305.00625 * 5 3 2 30 30 H 1.09001 * 109.46455 * 65.00085 * 5 3 2 31 31 H 0.96998 * 120.00018 * 0.02562 * 6 5 3 32 32 H 1.08000 * 119.15878 * 0.38900 * 10 9 7 33 33 H 1.08993 * 109.73735 * 285.60223 * 12 11 10 34 34 H 1.09004 * 109.73751 * 164.90024 * 12 11 10 35 35 H 1.09006 * 109.74981 * 182.22115 * 13 12 11 36 36 H 1.09002 * 109.79710 * 61.49898 * 13 12 11 37 37 H 0.97000 * 119.99812 * 94.99561 * 15 3 2 38 38 H 0.97000 * 120.00432 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4443 -0.1256 6 7 4.0631 2.8168 -0.0059 7 6 5.3857 3.0630 -0.0867 8 8 6.1663 2.1450 -0.2596 9 6 5.8835 4.4343 0.0324 10 6 5.0103 5.4337 0.2161 11 8 5.4145 6.7168 0.3299 12 6 6.8014 6.9348 0.6143 13 6 7.6256 6.0179 -0.3009 14 8 7.2233 4.6653 -0.0511 15 7 1.6524 2.0975 1.2518 16 6 0.4156 2.6735 1.3687 17 1 -0.2742 2.6446 0.5382 18 6 0.0482 3.2938 2.5550 19 7 0.8887 3.3286 3.5672 20 14 -1.6387 4.0801 2.7142 21 1 -2.6057 3.0774 3.2286 22 1 -1.5641 5.2250 3.6571 23 1 -2.0873 4.5632 1.3836 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9954 0.8310 0.6660 30 1 3.8499 1.0377 -1.0959 31 1 3.4411 3.5483 0.1316 32 1 3.9563 5.2066 0.2790 33 1 7.0056 6.6936 1.6574 34 1 7.0579 7.9762 0.4196 35 1 8.6866 6.1334 -0.0792 36 1 7.4375 6.2718 -1.3441 37 1 2.2719 2.1231 1.9978 38 1 0.6322 3.7623 4.3960 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715045872.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:12 Heat of formation + Delta-G solvation = -104.286264 kcal Electronic energy + Delta-G solvation = -21151.646797 eV Core-core repulsion = 17801.850441 eV Total energy + Delta-G solvation = -3349.796355 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.11197 -40.46374 -38.36919 -37.86320 -35.41309 -34.25560 -33.01546 -31.47478 -30.34533 -28.81670 -26.41922 -25.54066 -24.16231 -22.58871 -21.57184 -20.42818 -19.63936 -19.32318 -18.96886 -17.40757 -17.03982 -16.84004 -16.31666 -16.14568 -15.82073 -15.63993 -15.29461 -15.11234 -15.04086 -14.57197 -14.32571 -14.11350 -13.72505 -13.18678 -12.93972 -12.78138 -12.75506 -12.34638 -12.08344 -11.98786 -11.84429 -11.69077 -11.59005 -11.30447 -11.04253 -10.84957 -10.17006 -9.26578 -8.95574 -7.84936 -5.12172 0.22457 1.52313 1.54263 1.60711 1.63583 2.06399 2.24431 2.61967 2.78741 3.40211 3.49152 3.72844 3.90993 3.93785 3.98577 3.99244 4.25533 4.39694 4.42520 4.50581 4.59118 4.62424 4.73229 4.85340 4.90022 5.11639 5.14381 5.23653 5.41043 5.58206 5.64988 5.74980 5.76514 6.20981 6.34954 6.54472 7.11360 7.43271 8.14418 8.39573 9.37788 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.016892 B = 0.005565 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.204953 B = 5030.461554 C = 6376.928008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.164 3.836 4 H 0.064 0.936 5 C 0.123 3.877 6 N -0.699 5.699 7 C 0.570 3.430 8 O -0.579 6.579 9 C -0.095 4.095 10 C 0.036 3.964 11 O -0.308 6.308 12 C 0.007 3.993 13 C 0.013 3.987 14 O -0.317 6.317 15 N -0.728 5.728 16 C -0.215 4.215 17 H 0.082 0.918 18 C -0.072 4.072 19 N -0.967 5.967 20 Si 0.957 3.043 21 H -0.296 1.296 22 H -0.304 1.304 23 H -0.268 1.268 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.045 0.955 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.411 0.589 32 H 0.187 0.813 33 H 0.081 0.919 34 H 0.160 0.840 35 H 0.151 0.849 36 H 0.085 0.915 37 H 0.372 0.628 38 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.027 5.717 -9.505 14.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.056 3.944 4 H 0.082 0.918 5 C -0.001 4.001 6 N -0.352 5.352 7 C 0.359 3.641 8 O -0.461 6.461 9 C -0.144 4.144 10 C -0.031 4.031 11 O -0.219 6.219 12 C -0.067 4.067 13 C -0.062 4.062 14 O -0.232 6.232 15 N -0.369 5.369 16 C -0.347 4.347 17 H 0.100 0.900 18 C -0.264 4.264 19 N -0.619 5.619 20 Si 0.789 3.211 21 H -0.224 1.224 22 H -0.231 1.231 23 H -0.193 1.193 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.094 0.906 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.249 0.751 32 H 0.204 0.796 33 H 0.100 0.900 34 H 0.178 0.822 35 H 0.168 0.832 36 H 0.103 0.897 37 H 0.204 0.796 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.430 5.189 -9.697 14.487 hybrid contribution -0.895 0.671 0.997 1.498 sum 8.535 5.859 -8.700 13.523 Atomic orbital electron populations 1.21698 0.95887 1.00585 1.01858 1.21988 0.96679 0.97241 1.01137 1.20741 0.90463 0.93506 0.89716 0.91799 1.21676 0.94620 0.81863 1.01939 1.45757 1.05809 1.11321 1.72336 1.17439 0.82634 0.87227 0.76843 1.90772 1.56738 1.46816 1.51743 1.20127 0.85345 0.93848 1.15058 1.23355 0.99408 0.82814 0.97557 1.86103 1.28817 1.22566 1.84464 1.24094 0.78402 1.04072 1.00138 1.24029 1.02511 0.79276 1.00410 1.86350 1.18009 1.30664 1.88188 1.42606 1.15848 1.66107 1.12345 1.19506 0.92449 1.25208 0.97511 0.90004 1.25350 1.00795 1.03556 0.96680 1.69803 1.36734 1.51010 1.04309 0.85367 0.81007 0.77374 0.77389 1.22406 1.23101 1.19270 0.92950 0.93265 0.93041 0.90554 0.93618 0.92776 0.89708 0.75083 0.79624 0.90049 0.82248 0.83154 0.89709 0.79557 0.94491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.67 9.18 71.98 0.66 -4.01 16 2 C -0.13 -4.11 5.61 30.59 0.17 -3.94 16 3 C 0.16 5.66 2.59 44.99 0.12 5.78 16 4 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 5 C 0.12 4.03 5.23 86.38 0.45 4.48 16 6 N -0.70 -23.29 5.32 -467.35 -2.49 -25.78 16 7 C 0.57 20.86 7.73 86.36 0.67 21.53 16 8 O -0.58 -25.17 16.92 10.08 0.17 -25.00 16 9 C -0.10 -3.04 6.61 23.42 0.15 -2.89 16 10 C 0.04 1.00 10.58 66.85 0.71 1.70 16 11 O -0.31 -7.50 10.47 -69.29 -0.73 -8.23 16 12 C 0.01 0.12 7.30 72.17 0.53 0.65 16 13 C 0.01 0.22 7.31 72.17 0.53 0.75 16 14 O -0.32 -9.67 10.28 -71.74 -0.74 -10.41 16 15 N -0.73 -31.99 4.51 -322.92 -1.46 -33.45 16 16 C -0.21 -10.46 7.75 84.03 0.65 -9.81 16 17 H 0.08 3.81 7.32 -2.91 -0.02 3.79 16 18 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 19 N -0.97 -55.77 13.06 21.65 0.28 -55.49 16 20 Si 0.96 43.61 29.55 68.60 2.03 45.64 16 21 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 22 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 23 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 24 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.05 1.96 5.99 -2.39 -0.01 1.95 16 26 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 28 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.08 2.50 8.14 -2.39 -0.02 2.49 16 31 H 0.41 13.24 5.98 -92.71 -0.55 12.69 16 32 H 0.19 4.93 6.08 -2.91 -0.02 4.91 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.16 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.15 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.37 18.40 7.80 -92.71 -0.72 17.68 16 38 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -67.98 317.79 1.99 -65.99 By element: Atomic # 1 Polarization: 35.99 SS G_CDS: -0.19 Total: 35.79 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 5.10 Total: 10.93 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -3.66 Total: -114.71 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -1.29 Total: -43.64 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -67.98 1.99 -65.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715045872.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.297 kcal (2) G-P(sol) polarization free energy of solvation -67.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds