Wall clock time and date at job start Mon Mar 30 2020 01:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53004 * 109.46849 * 2 1 4 4 H 1.09006 * 109.46992 * 54.99834 * 3 2 1 5 5 C 1.52996 * 109.46644 * 174.99590 * 3 2 1 6 6 N 1.46504 * 109.46681 * 174.99857 * 5 3 2 7 7 C 1.34777 * 119.99854 * 179.97438 * 6 5 3 8 8 O 1.21743 * 120.00050 * 0.02562 * 7 6 5 9 9 C 1.46377 * 120.00307 * 180.27510 * 7 6 5 10 10 C 1.33976 * 119.22871 * 359.46430 * 9 7 6 11 11 O 1.35002 * 121.69250 * 180.02562 * 10 9 7 12 12 C 1.43243 * 116.82955 * 343.35155 * 11 10 9 13 13 C 1.53559 * 108.08981 * 45.23306 * 12 11 10 14 14 O 1.36208 * 119.23645 * 179.72570 * 9 7 6 15 15 N 1.46490 * 109.47331 * 294.99736 * 3 2 1 16 16 C 1.36939 * 119.99977 * 85.00040 * 15 3 2 17 17 H 1.07998 * 120.00319 * 359.97438 * 16 15 3 18 18 C 1.38818 * 120.00282 * 180.02562 * 16 15 3 19 19 N 1.31618 * 119.99544 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00227 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47083 * 60.00080 * 20 18 16 22 22 H 1.48503 * 109.46784 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.46801 * 299.99744 * 20 18 16 24 24 H 1.08997 * 109.46843 * 300.00125 * 1 2 3 25 25 H 1.08999 * 109.46707 * 59.99829 * 1 2 3 26 26 H 1.09003 * 109.46715 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47273 * 240.00194 * 2 1 3 28 28 H 1.08999 * 109.46707 * 120.00171 * 2 1 3 29 29 H 1.08998 * 109.47328 * 55.00190 * 5 3 2 30 30 H 1.08997 * 109.47540 * 294.99936 * 5 3 2 31 31 H 0.97000 * 120.00410 * 0.02562 * 6 5 3 32 32 H 1.08007 * 119.15637 * 0.36492 * 10 9 7 33 33 H 1.09003 * 109.74140 * 285.58758 * 12 11 10 34 34 H 1.08998 * 109.74305 * 164.88191 * 12 11 10 35 35 H 1.08999 * 109.75155 * 182.21528 * 13 12 11 36 36 H 1.08999 * 109.79258 * 61.50074 * 13 12 11 37 37 H 0.96998 * 120.00359 * 265.00702 * 15 3 2 38 38 H 0.97003 * 120.00096 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4443 0.1258 6 7 4.0630 2.8169 0.0060 7 6 5.3856 3.0631 0.0870 8 8 6.1663 2.1450 0.2592 9 6 5.8830 4.4351 -0.0267 10 6 5.0107 5.4331 -0.2218 11 8 5.4147 6.7164 -0.3342 12 6 6.7386 7.0196 0.1209 13 6 7.6864 5.9358 -0.4132 14 8 7.2222 4.6668 0.0630 15 7 1.6526 2.0975 -1.2517 16 6 0.4157 2.6735 -1.3688 17 1 -0.2742 2.6445 -0.5384 18 6 0.0483 3.2937 -2.5551 19 7 0.8889 3.3285 -3.5672 20 14 -1.6387 4.0800 -2.7145 21 1 -1.7865 5.1462 -1.6916 22 1 -1.7833 4.6709 -4.0692 23 1 -2.6869 3.0484 -2.5094 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8935 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.9955 0.8311 -0.6658 30 1 3.8499 1.0377 1.0961 31 1 3.4410 3.5485 -0.1308 32 1 3.9567 5.2059 -0.2855 33 1 6.7614 7.0239 1.2107 34 1 7.0440 7.9949 -0.2581 35 1 8.6975 6.1188 -0.0495 36 1 7.6798 5.9442 -1.5031 37 1 2.2720 2.1231 -1.9977 38 1 0.6321 3.7615 -4.3964 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715045889.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:15 Heat of formation + Delta-G solvation = -104.112807 kcal Electronic energy + Delta-G solvation = -21150.800606 eV Core-core repulsion = 17801.011772 eV Total energy + Delta-G solvation = -3349.788834 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.11385 -40.46367 -38.36940 -37.86567 -35.41172 -34.25332 -33.01562 -31.47341 -30.34368 -28.81627 -26.42127 -25.53796 -24.16109 -22.58868 -21.56984 -20.43313 -19.63671 -19.32573 -18.96542 -17.43323 -16.99710 -16.75716 -16.53741 -16.00957 -15.80673 -15.62060 -15.33763 -15.16201 -14.99672 -14.56570 -14.35728 -14.04922 -13.77592 -13.15434 -12.95326 -12.76519 -12.71621 -12.36581 -12.12078 -11.99501 -11.84309 -11.68779 -11.59241 -11.30103 -11.04255 -10.83826 -10.17008 -9.26532 -8.95323 -7.84536 -5.11833 0.22967 1.53595 1.54396 1.59646 1.60901 2.11081 2.22310 2.62167 2.78189 3.40281 3.49307 3.73044 3.91163 3.93645 3.98455 3.99240 4.25827 4.39691 4.42335 4.50578 4.59121 4.62182 4.73265 4.85359 4.90049 5.11628 5.14365 5.23533 5.41047 5.58206 5.64892 5.75079 5.76689 6.21110 6.35169 6.54378 7.11335 7.43506 8.14759 8.39894 9.37952 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.016861 B = 0.005549 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.236063 B = 5045.196391 C = 6360.866567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.165 3.835 4 H 0.064 0.936 5 C 0.123 3.877 6 N -0.699 5.699 7 C 0.570 3.430 8 O -0.579 6.579 9 C -0.096 4.096 10 C 0.037 3.963 11 O -0.309 6.309 12 C 0.010 3.990 13 C 0.010 3.990 14 O -0.316 6.316 15 N -0.728 5.728 16 C -0.217 4.217 17 H 0.082 0.918 18 C -0.071 4.071 19 N -0.967 5.967 20 Si 0.958 3.042 21 H -0.278 1.278 22 H -0.305 1.305 23 H -0.284 1.284 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.411 0.589 32 H 0.187 0.813 33 H 0.091 0.909 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.076 0.924 37 H 0.372 0.628 38 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.989 5.734 9.534 14.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.056 3.944 4 H 0.082 0.918 5 C -0.001 4.001 6 N -0.352 5.352 7 C 0.359 3.641 8 O -0.461 6.461 9 C -0.145 4.145 10 C -0.030 4.030 11 O -0.221 6.221 12 C -0.065 4.065 13 C -0.065 4.065 14 O -0.230 6.230 15 N -0.369 5.369 16 C -0.348 4.348 17 H 0.100 0.900 18 C -0.264 4.264 19 N -0.618 5.618 20 Si 0.789 3.211 21 H -0.204 1.204 22 H -0.232 1.232 23 H -0.210 1.210 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.249 0.751 32 H 0.203 0.797 33 H 0.109 0.891 34 H 0.175 0.825 35 H 0.171 0.829 36 H 0.094 0.906 37 H 0.204 0.796 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.391 5.200 9.714 14.478 hybrid contribution -0.887 0.674 -1.009 1.503 sum 8.504 5.874 8.705 13.513 Atomic orbital electron populations 1.21698 0.95900 1.00569 1.01851 1.21990 0.96660 0.97254 1.01133 1.20736 0.90459 0.93501 0.89720 0.91806 1.21675 0.94622 0.81861 1.01938 1.45759 1.05812 1.11336 1.72314 1.17440 0.82650 0.87176 0.76865 1.90773 1.56729 1.46863 1.51712 1.20129 0.84980 0.93307 1.16058 1.23350 0.99053 0.82365 0.98254 1.86109 1.34060 1.23522 1.78418 1.24100 0.79746 1.01307 1.01310 1.24024 1.00841 0.81236 1.00394 1.86336 1.18317 1.38045 1.80350 1.42592 1.15849 1.66117 1.12337 1.19465 0.92492 1.25360 0.97518 0.90045 1.25357 1.00820 1.03513 0.96660 1.69800 1.36802 1.50950 1.04271 0.85438 0.81176 0.78525 0.75967 1.20396 1.23248 1.21016 0.93040 0.93292 0.92965 0.93618 0.90554 0.92786 0.89698 0.75087 0.79657 0.89083 0.82533 0.82891 0.90623 0.79559 0.94484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 9.18 71.99 0.66 -4.02 16 2 C -0.13 -4.11 5.61 30.60 0.17 -3.94 16 3 C 0.16 5.67 2.59 44.99 0.12 5.79 16 4 H 0.06 2.13 8.08 -2.38 -0.02 2.11 16 5 C 0.12 4.03 5.23 86.38 0.45 4.49 16 6 N -0.70 -23.32 5.32 -467.35 -2.49 -25.81 16 7 C 0.57 20.89 7.73 86.36 0.67 21.56 16 8 O -0.58 -25.20 16.92 10.06 0.17 -25.03 16 9 C -0.10 -3.07 6.61 23.42 0.15 -2.92 16 10 C 0.04 1.03 10.58 66.85 0.71 1.74 16 11 O -0.31 -7.54 10.47 -69.24 -0.72 -8.27 16 12 C 0.01 0.15 7.30 72.17 0.53 0.68 16 13 C 0.01 0.19 7.31 72.17 0.53 0.71 16 14 O -0.32 -9.63 10.28 -71.70 -0.74 -10.37 16 15 N -0.73 -32.03 4.51 -322.95 -1.46 -33.48 16 16 C -0.22 -10.56 7.75 84.03 0.65 -9.91 16 17 H 0.08 3.79 7.32 -2.91 -0.02 3.77 16 18 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 19 N -0.97 -55.79 13.06 21.65 0.28 -55.51 16 20 Si 0.96 43.61 29.55 68.60 2.03 45.64 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 22 H -0.31 -14.48 7.11 99.48 0.71 -13.77 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.05 1.96 5.99 -2.39 -0.01 1.95 16 26 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.41 13.27 5.98 -92.71 -0.55 12.71 16 32 H 0.19 4.94 6.08 -2.91 -0.02 4.92 16 33 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.16 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.15 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.37 18.42 7.80 -92.71 -0.72 17.70 16 38 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -67.97 317.79 1.99 -65.99 By element: Atomic # 1 Polarization: 36.17 SS G_CDS: -0.19 Total: 35.97 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 5.10 Total: 10.87 kcal Atomic # 7 Polarization: -111.14 SS G_CDS: -3.66 Total: -114.80 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -1.29 Total: -43.66 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -67.97 1.99 -65.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715045889.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.126 kcal (2) G-P(sol) polarization free energy of solvation -67.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds