Wall clock time and date at job start Mon Mar 30 2020 02:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47081 * 2 1 4 4 C 1.53002 * 109.46595 * 240.00601 * 2 1 3 5 5 N 1.46504 * 109.46713 * 185.00068 * 4 2 1 6 6 C 1.46501 * 120.00121 * 90.00162 * 5 4 2 7 7 C 1.34773 * 120.00178 * 269.99601 * 5 4 2 8 8 O 1.21744 * 119.99728 * 5.73396 * 7 5 4 9 9 C 1.46371 * 120.00549 * 185.73680 * 7 5 4 10 10 C 1.33986 * 119.22839 * 29.64015 * 9 7 5 11 11 O 1.34998 * 121.68692 * 180.12275 * 10 9 7 12 12 C 1.43252 * 116.83151 * 343.32433 * 11 10 9 13 13 C 1.53548 * 108.08482 * 45.24939 * 12 11 10 14 14 O 1.36211 * 119.23500 * 209.91830 * 9 7 5 15 15 N 1.46494 * 109.47189 * 120.00894 * 2 1 3 16 16 C 1.36939 * 119.99473 * 274.99777 * 15 2 1 17 17 H 1.07998 * 120.00363 * 359.97438 * 16 15 2 18 18 C 1.38816 * 119.99922 * 180.02562 * 16 15 2 19 19 N 1.31612 * 119.99995 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00042 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47244 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.46931 * 119.99585 * 20 18 16 23 23 H 1.48494 * 109.46996 * 239.99151 * 20 18 16 24 24 H 1.08998 * 109.46599 * 299.99492 * 1 2 3 25 25 H 1.09004 * 109.46872 * 59.99248 * 1 2 3 26 26 H 1.09001 * 109.47081 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47138 * 304.99874 * 4 2 1 28 28 H 1.08994 * 109.47533 * 65.00301 * 4 2 1 29 29 H 1.08999 * 109.47500 * 82.21391 * 6 5 4 30 30 H 1.09000 * 109.47173 * 202.21490 * 6 5 4 31 31 H 1.09005 * 109.46797 * 322.21712 * 6 5 4 32 32 H 1.07995 * 119.15626 * 0.39735 * 10 9 7 33 33 H 1.09002 * 109.73269 * 285.60530 * 12 11 10 34 34 H 1.08996 * 109.74156 * 164.90042 * 12 11 10 35 35 H 1.09005 * 109.75330 * 182.22197 * 13 12 11 36 36 H 1.09000 * 109.75572 * 61.47764 * 13 12 11 37 37 H 0.96994 * 120.00510 * 95.00093 * 15 2 1 38 38 H 0.97002 * 120.00287 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 3.5000 -0.8263 -1.1907 6 6 4.1258 -1.9920 -0.5615 7 6 4.2676 0.1492 -1.7157 8 8 3.7518 1.1652 -2.1445 9 6 5.7213 -0.0127 -1.7704 10 6 6.2387 -1.2436 -1.8818 11 8 7.5717 -1.4504 -1.9340 12 6 8.3910 -0.3143 -2.2342 13 6 7.8967 0.8670 -1.3870 14 8 6.5166 1.0909 -1.7012 15 7 2.0184 -0.6908 1.1960 16 6 2.1492 -0.0077 2.3756 17 1 1.8927 1.0403 2.4242 18 6 2.6124 -0.6620 3.5089 19 7 2.9254 -1.9390 3.4497 20 14 2.7915 0.2699 5.1179 21 1 2.3776 1.6823 4.9206 22 1 1.9312 -0.3586 6.1523 23 1 4.2086 0.2268 5.5597 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6053 -1.7197 -1.2953 28 1 1.7516 -0.1582 -2.1370 29 1 4.1564 -2.8167 -1.2736 30 1 5.1408 -1.7385 -0.2554 31 1 3.5458 -2.2881 0.3126 32 1 5.5722 -2.0917 -1.9355 33 1 8.3064 -0.0690 -3.2929 34 1 9.4299 -0.5343 -1.9886 35 1 8.4776 1.7586 -1.6235 36 1 7.9997 0.6296 -0.3282 37 1 2.2491 -1.6319 1.1524 38 1 3.2488 -2.3964 4.2417 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755575879.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:59 Heat of formation + Delta-G solvation = -52.015239 kcal Electronic energy + Delta-G solvation = -21791.498817 eV Core-core repulsion = 18443.969103 eV Total energy + Delta-G solvation = -3347.529714 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.12090 -39.28390 -37.05084 -36.13111 -34.51820 -32.48323 -31.52966 -29.22480 -28.56365 -26.93956 -25.88416 -24.80685 -23.58860 -21.13644 -20.07909 -19.25612 -18.27503 -17.31175 -17.28155 -16.71606 -15.62143 -15.29394 -15.08284 -14.78045 -14.49631 -14.17031 -13.91814 -13.69418 -13.51947 -13.20845 -12.60966 -12.36182 -12.21843 -12.01265 -11.61602 -11.32331 -11.26066 -11.00370 -10.85692 -10.68896 -10.59767 -10.36690 -10.02539 -9.64307 -9.52814 -8.92293 -8.23753 -8.05405 -6.93782 -5.77605 -3.03807 1.55533 2.61200 3.13011 3.43262 3.50184 3.51947 3.57389 3.81137 4.23973 4.60645 4.72460 4.75346 4.88258 5.03123 5.22513 5.41174 5.45165 5.51259 5.54063 5.58256 5.75003 5.86810 5.92892 6.12148 6.28604 6.31168 6.37313 6.69116 6.71618 6.83034 6.90935 7.16510 7.37723 7.68657 7.74851 8.42470 8.47559 9.53671 10.09078 10.44942 11.45649 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.017002 B = 0.006274 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.453377 B = 4461.511776 C = 5282.365902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.152 3.848 3 H 0.054 0.946 4 C 0.114 3.886 5 N -0.585 5.585 6 C 0.058 3.942 7 C 0.575 3.425 8 O -0.531 6.531 9 C -0.062 4.062 10 C -0.016 4.016 11 O -0.303 6.303 12 C 0.014 3.986 13 C 0.017 3.983 14 O -0.288 6.288 15 N -0.720 5.720 16 C -0.228 4.228 17 H 0.069 0.931 18 C -0.015 4.015 19 N -0.936 5.936 20 Si 0.904 3.096 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.293 1.293 24 H 0.056 0.944 25 H 0.039 0.961 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.194 0.806 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.079 0.921 37 H 0.380 0.620 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.340 -1.204 -12.359 14.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.042 3.958 3 H 0.072 0.928 4 C -0.008 4.008 5 N -0.318 5.318 6 C -0.085 4.085 7 C 0.363 3.637 8 O -0.409 6.409 9 C -0.111 4.111 10 C -0.081 4.081 11 O -0.216 6.216 12 C -0.061 4.061 13 C -0.059 4.059 14 O -0.201 6.201 15 N -0.363 5.363 16 C -0.360 4.360 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.586 5.586 20 Si 0.735 3.265 21 H -0.207 1.207 22 H -0.220 1.220 23 H -0.220 1.220 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.119 0.881 32 H 0.211 0.789 33 H 0.096 0.904 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.097 0.903 37 H 0.216 0.784 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.127 -0.513 -12.446 14.874 hybrid contribution 0.408 0.177 1.160 1.243 sum 8.536 -0.336 -11.286 14.154 Atomic orbital electron populations 1.22365 0.98671 1.00840 1.00353 1.20686 0.92030 0.96524 0.86577 0.92778 1.21887 0.77782 1.01430 0.99748 1.47371 1.06791 1.21288 1.56330 1.22491 1.00795 0.86531 0.98669 1.17120 0.84445 0.83392 0.78791 1.90802 1.74348 1.27385 1.48370 1.20423 0.92018 0.86889 1.11722 1.23931 0.84347 0.97738 1.02113 1.86111 1.15173 1.35034 1.85266 1.23664 0.95765 0.86624 1.00083 1.23655 0.81854 1.00295 1.00087 1.86415 1.19033 1.28392 1.86299 1.42484 1.78168 1.10354 1.05312 1.19295 1.35569 0.93869 0.87218 0.91302 1.24657 1.02471 0.96009 0.97888 1.69624 1.51690 1.08556 1.28725 0.86152 0.77213 0.78909 0.84193 1.20656 1.21959 1.22041 0.92533 0.94238 0.93445 0.90520 0.89965 0.92875 0.90025 0.88144 0.78945 0.90411 0.86368 0.86319 0.90306 0.78383 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.49 37.16 0.35 -2.58 16 2 C 0.15 3.13 3.20 -67.93 -0.22 2.91 16 3 H 0.05 1.26 8.08 -51.93 -0.42 0.84 16 4 C 0.11 1.95 5.03 -4.04 -0.02 1.93 16 5 N -0.59 -10.19 2.73 -183.23 -0.50 -10.69 16 6 C 0.06 0.89 8.43 59.85 0.50 1.39 16 7 C 0.57 11.06 7.45 -12.99 -0.10 10.97 16 8 O -0.53 -11.92 16.68 -6.35 -0.11 -12.03 16 9 C -0.06 -1.04 6.11 -37.81 -0.23 -1.28 16 10 C -0.02 -0.22 8.45 29.24 0.25 0.02 16 11 O -0.30 -3.82 10.47 -30.82 -0.32 -4.14 16 12 C 0.01 0.14 7.30 37.44 0.27 0.41 16 13 C 0.02 0.19 7.31 37.44 0.27 0.47 16 14 O -0.29 -4.85 10.41 -44.12 -0.46 -5.31 16 15 N -0.72 -17.43 4.54 -53.42 -0.24 -17.67 16 16 C -0.23 -6.30 9.93 -15.06 -0.15 -6.45 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 19 N -0.94 -27.13 13.06 55.49 0.72 -26.41 16 20 Si 0.90 22.54 29.55 -169.99 -5.02 17.52 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 24 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 28 H 0.08 1.35 7.51 -51.93 -0.39 0.96 16 29 H 0.05 0.61 7.17 -51.93 -0.37 0.24 16 30 H 0.08 1.28 5.28 -51.93 -0.27 1.00 16 31 H 0.10 1.85 5.49 -51.93 -0.28 1.56 16 32 H 0.19 2.28 4.76 -52.49 -0.25 2.03 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.12 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.12 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.38 9.34 5.29 -40.82 -0.22 9.12 16 38 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 311.73 15.07 4.70 4.70 Total: -1.00 -33.93 311.73 -5.52 -39.45 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -5.13 Total: 7.31 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 0.84 Total: 7.28 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: -0.02 Total: -54.77 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.89 Total: -21.48 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.93 -5.52 -39.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755575879.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.565 kcal (2) G-P(sol) polarization free energy of solvation -33.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds