Wall clock time and date at job start Mon Mar 30 2020 02:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47081 * 2 1 4 4 C 1.53002 * 109.46595 * 240.00601 * 2 1 3 5 5 N 1.46504 * 109.46713 * 185.00068 * 4 2 1 6 6 C 1.46501 * 120.00121 * 90.00162 * 5 4 2 7 7 C 1.34773 * 120.00178 * 269.99601 * 5 4 2 8 8 O 1.21744 * 119.99728 * 5.73396 * 7 5 4 9 9 C 1.46371 * 120.00549 * 185.73680 * 7 5 4 10 10 C 1.33986 * 119.22839 * 29.64015 * 9 7 5 11 11 O 1.34998 * 121.68692 * 180.12275 * 10 9 7 12 12 C 1.43252 * 116.83151 * 343.32433 * 11 10 9 13 13 C 1.53548 * 108.08482 * 45.24939 * 12 11 10 14 14 O 1.36211 * 119.23500 * 209.91830 * 9 7 5 15 15 N 1.46494 * 109.47189 * 120.00894 * 2 1 3 16 16 C 1.36939 * 119.99473 * 274.99777 * 15 2 1 17 17 H 1.07998 * 120.00363 * 359.97438 * 16 15 2 18 18 C 1.38816 * 119.99922 * 180.02562 * 16 15 2 19 19 N 1.31612 * 119.99995 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00042 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47244 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.46931 * 119.99585 * 20 18 16 23 23 H 1.48494 * 109.46996 * 239.99151 * 20 18 16 24 24 H 1.08998 * 109.46599 * 299.99492 * 1 2 3 25 25 H 1.09004 * 109.46872 * 59.99248 * 1 2 3 26 26 H 1.09001 * 109.47081 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47138 * 304.99874 * 4 2 1 28 28 H 1.08994 * 109.47533 * 65.00301 * 4 2 1 29 29 H 1.08999 * 109.47500 * 82.21391 * 6 5 4 30 30 H 1.09000 * 109.47173 * 202.21490 * 6 5 4 31 31 H 1.09005 * 109.46797 * 322.21712 * 6 5 4 32 32 H 1.07995 * 119.15626 * 0.39735 * 10 9 7 33 33 H 1.09002 * 109.73269 * 285.60530 * 12 11 10 34 34 H 1.08996 * 109.74156 * 164.90042 * 12 11 10 35 35 H 1.09005 * 109.75330 * 182.22197 * 13 12 11 36 36 H 1.09000 * 109.75572 * 61.47764 * 13 12 11 37 37 H 0.96994 * 120.00510 * 95.00093 * 15 2 1 38 38 H 0.97002 * 120.00287 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 3.5000 -0.8263 -1.1907 6 6 4.1258 -1.9920 -0.5615 7 6 4.2676 0.1492 -1.7157 8 8 3.7518 1.1652 -2.1445 9 6 5.7213 -0.0127 -1.7704 10 6 6.2387 -1.2436 -1.8818 11 8 7.5717 -1.4504 -1.9340 12 6 8.3910 -0.3143 -2.2342 13 6 7.8967 0.8670 -1.3870 14 8 6.5166 1.0909 -1.7012 15 7 2.0184 -0.6908 1.1960 16 6 2.1492 -0.0077 2.3756 17 1 1.8927 1.0403 2.4242 18 6 2.6124 -0.6620 3.5089 19 7 2.9254 -1.9390 3.4497 20 14 2.7915 0.2699 5.1179 21 1 2.3776 1.6823 4.9206 22 1 1.9312 -0.3586 6.1523 23 1 4.2086 0.2268 5.5597 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6053 -1.7197 -1.2953 28 1 1.7516 -0.1582 -2.1370 29 1 4.1564 -2.8167 -1.2736 30 1 5.1408 -1.7385 -0.2554 31 1 3.5458 -2.2881 0.3126 32 1 5.5722 -2.0917 -1.9355 33 1 8.3064 -0.0690 -3.2929 34 1 9.4299 -0.5343 -1.9886 35 1 8.4776 1.7586 -1.6235 36 1 7.9997 0.6296 -0.3282 37 1 2.2491 -1.6319 1.1524 38 1 3.2488 -2.3964 4.2417 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755575879.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:58 Heat of formation + Delta-G solvation = -76.129766 kcal Electronic energy + Delta-G solvation = -21792.544501 eV Core-core repulsion = 18443.969103 eV Total energy + Delta-G solvation = -3348.575398 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.22343 -40.62187 -38.23187 -37.66213 -36.08950 -34.23264 -32.81814 -30.78454 -29.91490 -28.26641 -27.19713 -26.05504 -25.43488 -22.46891 -21.51985 -20.47196 -19.33725 -19.31086 -18.56160 -17.83454 -17.04331 -16.63607 -16.58828 -16.08458 -15.79224 -15.57483 -15.27583 -15.12783 -14.94446 -14.58639 -13.97644 -13.83352 -13.61950 -13.48114 -13.11742 -12.85217 -12.83064 -12.58223 -12.50187 -12.17591 -11.93409 -11.87889 -11.68755 -11.55249 -11.03463 -10.88294 -9.67835 -9.19538 -8.93670 -7.93312 -5.17893 0.36833 1.38487 1.43881 1.45548 1.54135 2.09035 2.33446 2.55717 2.67007 3.40549 3.41606 3.58893 3.85955 3.93279 3.97719 4.08510 4.21158 4.22979 4.41027 4.44387 4.54483 4.61395 4.65275 4.71768 4.84335 4.88926 4.98575 5.19038 5.27387 5.35870 5.52614 5.63628 5.77388 6.22500 6.31525 6.41530 7.07647 7.38181 8.10493 8.40193 9.29340 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.017002 B = 0.006274 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.453377 B = 4461.511776 C = 5282.365902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.149 3.851 3 H 0.017 0.983 4 C 0.118 3.882 5 N -0.585 5.585 6 C 0.060 3.940 7 C 0.566 3.434 8 O -0.579 6.579 9 C -0.104 4.104 10 C 0.023 3.977 11 O -0.307 6.307 12 C 0.013 3.987 13 C 0.008 3.992 14 O -0.325 6.325 15 N -0.723 5.723 16 C -0.234 4.234 17 H 0.057 0.943 18 C -0.064 4.064 19 N -0.957 5.957 20 Si 0.958 3.042 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.294 1.294 24 H 0.034 0.966 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.107 0.893 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.214 0.786 33 H 0.089 0.911 34 H 0.158 0.842 35 H 0.148 0.852 36 H 0.072 0.928 37 H 0.380 0.620 38 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.352 -2.429 -13.203 16.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.040 3.960 3 H 0.035 0.965 4 C -0.004 4.004 5 N -0.316 5.316 6 C -0.082 4.082 7 C 0.356 3.644 8 O -0.461 6.461 9 C -0.152 4.152 10 C -0.043 4.043 11 O -0.219 6.219 12 C -0.061 4.061 13 C -0.067 4.067 14 O -0.240 6.240 15 N -0.367 5.367 16 C -0.366 4.366 17 H 0.075 0.925 18 C -0.257 4.257 19 N -0.608 5.608 20 Si 0.789 3.211 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.221 1.221 24 H 0.053 0.947 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.125 0.875 28 H 0.108 0.892 29 H 0.120 0.880 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.230 0.770 33 H 0.107 0.893 34 H 0.175 0.825 35 H 0.166 0.834 36 H 0.090 0.910 37 H 0.215 0.785 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.145 -1.754 -13.303 16.238 hybrid contribution 0.183 0.559 1.386 1.506 sum 9.328 -1.195 -11.917 15.180 Atomic orbital electron populations 1.22200 0.96462 1.01743 1.00719 1.20811 0.93558 0.94714 0.86950 0.96484 1.21871 0.77955 1.02693 0.97901 1.47484 1.06906 1.21526 1.55659 1.22577 0.99655 0.87073 0.98864 1.17617 0.85773 0.82877 0.78140 1.90753 1.75421 1.29181 1.50705 1.20197 0.91037 0.88096 1.15916 1.24179 0.85199 0.96986 0.97890 1.86111 1.14619 1.36612 1.84528 1.24013 0.96878 0.84822 1.00406 1.24005 0.79875 1.02667 1.00138 1.86335 1.21335 1.29310 1.87002 1.42530 1.78439 1.10270 1.05443 1.19453 1.34879 0.93579 0.88707 0.92527 1.25261 1.03086 0.96912 1.00408 1.69728 1.52574 1.09368 1.29120 0.85293 0.76835 0.77956 0.81009 1.20421 1.21725 1.22124 0.94690 0.91353 0.92179 0.87471 0.89202 0.87958 0.90461 0.90938 0.77024 0.89282 0.82478 0.83414 0.91019 0.78463 0.93994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.37 9.49 71.98 0.68 -4.68 16 2 C 0.15 6.16 3.20 45.00 0.14 6.31 16 3 H 0.02 0.83 8.08 -2.39 -0.02 0.81 16 4 C 0.12 3.93 5.03 86.38 0.43 4.36 16 5 N -0.58 -20.00 2.73 -851.81 -2.32 -22.33 16 6 C 0.06 1.76 8.43 127.77 1.08 2.83 16 7 C 0.57 22.08 7.45 86.36 0.64 22.72 16 8 O -0.58 -26.93 16.68 6.51 0.11 -26.82 16 9 C -0.10 -3.50 6.11 23.42 0.14 -3.35 16 10 C 0.02 0.60 8.45 66.85 0.56 1.17 16 11 O -0.31 -6.84 10.47 -69.20 -0.72 -7.56 16 12 C 0.01 0.21 7.30 72.17 0.53 0.74 16 13 C 0.01 0.17 7.31 72.17 0.53 0.70 16 14 O -0.32 -11.02 10.41 -73.30 -0.76 -11.79 16 15 N -0.72 -35.37 4.54 -322.93 -1.47 -36.84 16 16 C -0.23 -13.14 9.93 84.03 0.83 -12.30 16 17 H 0.06 3.25 7.83 -2.91 -0.02 3.23 16 18 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 19 N -0.96 -55.58 13.06 21.65 0.28 -55.30 16 20 Si 0.96 46.68 29.55 68.60 2.03 48.71 16 21 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 22 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 23 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 24 H 0.03 1.36 8.14 -2.39 -0.02 1.35 16 25 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.11 2.91 8.07 -2.39 -0.02 2.89 16 28 H 0.09 2.87 7.51 -2.39 -0.02 2.85 16 29 H 0.10 1.98 7.17 -2.39 -0.02 1.96 16 30 H 0.08 2.32 5.28 -2.39 -0.01 2.30 16 31 H 0.07 2.61 5.49 -2.38 -0.01 2.59 16 32 H 0.21 4.35 4.76 -2.91 -0.01 4.34 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.16 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.15 2.13 8.14 -2.38 -0.02 2.11 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.38 18.67 5.29 -92.71 -0.49 18.18 16 38 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -75.63 311.73 3.77 -71.86 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 0.59 Total: 24.73 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 6.04 Total: 15.35 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -3.51 Total: -114.47 kcal Atomic # 8 Polarization: -44.80 SS G_CDS: -1.38 Total: -46.17 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -75.63 3.77 -71.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755575879.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.274 kcal (2) G-P(sol) polarization free energy of solvation -75.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds