Wall clock time and date at job start Mon Mar 30 2020 02:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47082 * 2 1 4 4 C 1.53000 * 109.47372 * 120.00034 * 2 1 3 5 5 N 1.46500 * 109.47305 * 175.00315 * 4 2 1 6 6 C 1.46501 * 119.99547 * 269.99800 * 5 4 2 7 7 C 1.34770 * 120.00155 * 90.00094 * 5 4 2 8 8 O 1.21738 * 120.00139 * 357.47240 * 7 5 4 9 9 C 1.46379 * 120.00166 * 177.74935 * 7 5 4 10 10 C 1.33968 * 119.22876 * 329.02531 * 9 7 5 11 11 O 1.35003 * 121.68789 * 180.02562 * 10 9 7 12 12 C 1.43242 * 116.83335 * 343.34886 * 11 10 9 13 13 C 1.53554 * 108.08607 * 45.23875 * 12 11 10 14 14 O 1.36220 * 119.23230 * 149.28863 * 9 7 5 15 15 N 1.46502 * 109.47114 * 240.00329 * 2 1 3 16 16 C 1.36937 * 120.00218 * 85.00217 * 15 2 1 17 17 H 1.08000 * 119.99852 * 359.97438 * 16 15 2 18 18 C 1.38807 * 119.99832 * 180.02562 * 16 15 2 19 19 N 1.31614 * 120.00202 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99881 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47402 * 59.99579 * 20 18 16 22 22 H 1.48497 * 109.47383 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47225 * 299.99612 * 20 18 16 24 24 H 1.09000 * 109.47127 * 59.99780 * 1 2 3 25 25 H 1.08995 * 109.46710 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46855 * 300.00009 * 1 2 3 27 27 H 1.08993 * 109.47096 * 54.99701 * 4 2 1 28 28 H 1.09004 * 109.47054 * 295.00101 * 4 2 1 29 29 H 1.08997 * 109.46921 * 276.16989 * 6 5 4 30 30 H 1.08998 * 109.47234 * 36.17250 * 6 5 4 31 31 H 1.09006 * 109.46805 * 156.16757 * 6 5 4 32 32 H 1.07998 * 119.16268 * 0.36590 * 10 9 7 33 33 H 1.09000 * 109.74080 * 285.59179 * 12 11 10 34 34 H 1.09001 * 109.74470 * 164.88481 * 12 11 10 35 35 H 1.09000 * 109.75578 * 182.22037 * 13 12 11 36 36 H 1.09000 * 109.79554 * 61.49658 * 13 12 11 37 37 H 0.97000 * 119.99538 * 264.99427 * 15 2 1 38 38 H 0.97008 * 119.99923 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1906 6 6 4.1259 -1.9919 0.5612 7 6 4.2676 0.1492 1.7156 8 8 3.7484 1.1393 2.1974 9 6 5.7257 0.0211 1.7011 10 6 6.2760 -1.1982 1.7735 11 8 7.6145 -1.3737 1.7645 12 6 8.4083 -0.2706 1.3120 13 6 7.8723 1.0063 1.9754 14 8 6.4914 1.1448 1.6197 15 7 2.0183 -0.6905 -1.1962 16 6 2.1492 -0.0074 -2.3758 17 1 1.8920 1.0404 -2.4243 18 6 2.6114 -0.6619 -3.5092 19 7 2.9243 -1.9389 -3.4502 20 14 2.7892 0.2699 -5.1185 21 1 3.7445 1.3924 -4.9377 22 1 3.2982 -0.6485 -6.1686 23 1 1.4666 0.8066 -5.5284 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3632 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6055 -1.7197 1.2952 28 1 1.7517 -0.1583 2.1370 29 1 4.1824 -2.8074 1.2821 30 1 3.5303 -2.3054 -0.2961 31 1 5.1306 -1.7299 0.2293 32 1 5.6324 -2.0632 1.8352 33 1 8.3321 -0.1823 0.2283 34 1 9.4491 -0.4244 1.5971 35 1 8.4332 1.8701 1.6188 36 1 7.9668 0.9272 3.0584 37 1 2.2491 -1.6317 -1.1526 38 1 3.2477 -2.3962 -4.2423 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755575880.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:02 Heat of formation + Delta-G solvation = -50.832552 kcal Electronic energy + Delta-G solvation = -21808.597139 eV Core-core repulsion = 18461.118710 eV Total energy + Delta-G solvation = -3347.478429 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.12170 -39.27963 -37.05852 -36.12564 -34.52046 -32.48542 -31.52486 -29.22956 -28.55582 -26.94524 -25.89588 -24.80305 -23.57938 -21.10399 -20.14913 -19.25441 -18.27215 -17.31989 -17.23988 -16.46679 -15.98316 -15.28238 -14.90336 -14.78550 -14.54828 -14.18372 -14.05580 -13.74357 -13.31310 -13.18880 -12.55926 -12.35040 -12.12934 -12.02847 -11.66938 -11.34284 -11.26223 -10.99220 -10.82220 -10.69462 -10.63973 -10.36916 -10.08110 -9.64956 -9.55142 -8.91219 -8.24364 -7.99602 -6.93727 -5.77072 -3.03369 1.54066 2.72992 3.16700 3.44742 3.45514 3.49031 3.50964 3.82168 4.25082 4.60976 4.73535 4.76865 4.88603 5.04193 5.23377 5.40938 5.45404 5.50377 5.53737 5.58481 5.74153 5.87217 5.93424 6.12808 6.28541 6.29983 6.36889 6.70003 6.71680 6.83092 6.90704 7.16358 7.38667 7.68247 7.74152 8.42962 8.47711 9.54053 10.09379 10.45334 11.46041 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.016562 B = 0.006415 C = 0.005357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.186323 B = 4363.813298 C = 5225.262272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.153 3.847 3 H 0.054 0.946 4 C 0.114 3.886 5 N -0.584 5.584 6 C 0.057 3.943 7 C 0.576 3.424 8 O -0.534 6.534 9 C -0.063 4.063 10 C -0.017 4.017 11 O -0.303 6.303 12 C 0.012 3.988 13 C 0.019 3.981 14 O -0.286 6.286 15 N -0.719 5.719 16 C -0.230 4.230 17 H 0.068 0.932 18 C -0.014 4.014 19 N -0.937 5.937 20 Si 0.904 3.096 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.287 1.287 24 H 0.056 0.944 25 H 0.046 0.954 26 H 0.039 0.961 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.196 0.804 33 H 0.082 0.918 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.380 0.620 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.403 -1.091 11.880 14.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.042 3.958 3 H 0.072 0.928 4 C -0.009 4.009 5 N -0.316 5.316 6 C -0.086 4.086 7 C 0.364 3.636 8 O -0.412 6.412 9 C -0.112 4.112 10 C -0.083 4.083 11 O -0.216 6.216 12 C -0.063 4.063 13 C -0.057 4.057 14 O -0.200 6.200 15 N -0.363 5.363 16 C -0.361 4.361 17 H 0.086 0.914 18 C -0.209 4.209 19 N -0.586 5.586 20 Si 0.736 3.264 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.214 1.214 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.118 0.882 31 H 0.100 0.900 32 H 0.212 0.788 33 H 0.100 0.900 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.092 0.908 37 H 0.216 0.784 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.195 -0.431 11.981 14.522 hybrid contribution 0.397 0.217 -1.154 1.239 sum 8.592 -0.214 10.828 13.824 Atomic orbital electron populations 1.22361 0.98655 1.00848 1.00353 1.20685 0.92046 0.96485 0.86589 0.92839 1.21891 0.77791 1.01463 0.99777 1.47346 1.06821 1.21246 1.56233 1.22514 1.00888 0.86637 0.98517 1.17065 0.84476 0.83111 0.78950 1.90799 1.74311 1.29278 1.46832 1.20399 0.92190 0.86175 1.12428 1.23986 0.84034 0.97614 1.02625 1.86085 1.15382 1.39171 1.80946 1.23709 0.95931 0.86452 1.00221 1.23619 0.81909 0.99793 1.00368 1.86429 1.19867 1.30008 1.83699 1.42465 1.78196 1.10338 1.05286 1.19201 1.35830 0.93828 0.87246 0.91415 1.24648 1.02434 0.95993 0.97862 1.69608 1.51566 1.08547 1.28928 0.86300 0.77786 0.78627 0.83704 1.21431 1.21770 1.21367 0.92522 0.93441 0.94243 0.90528 0.89882 0.92842 0.88187 0.89970 0.78765 0.89957 0.86387 0.86314 0.90754 0.78386 0.93596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.49 37.16 0.35 -2.59 16 2 C 0.15 3.13 3.20 -67.93 -0.22 2.92 16 3 H 0.05 1.24 8.08 -51.93 -0.42 0.82 16 4 C 0.11 1.94 5.05 -4.04 -0.02 1.92 16 5 N -0.58 -10.20 2.73 -183.24 -0.50 -10.70 16 6 C 0.06 0.88 8.42 59.85 0.50 1.38 16 7 C 0.58 11.12 7.46 -12.99 -0.10 11.02 16 8 O -0.53 -11.96 16.64 -6.19 -0.10 -12.07 16 9 C -0.06 -1.08 6.14 -37.81 -0.23 -1.31 16 10 C -0.02 -0.24 8.45 29.23 0.25 0.00 16 11 O -0.30 -3.86 10.47 -30.83 -0.32 -4.18 16 12 C 0.01 0.13 7.30 37.45 0.27 0.40 16 13 C 0.02 0.21 7.31 37.45 0.27 0.49 16 14 O -0.29 -4.87 10.41 -44.08 -0.46 -5.33 16 15 N -0.72 -17.42 4.55 -53.42 -0.24 -17.67 16 16 C -0.23 -6.35 9.93 -15.06 -0.15 -6.50 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 19 N -0.94 -27.12 13.06 55.49 0.72 -26.39 16 20 Si 0.90 22.52 29.55 -169.99 -5.02 17.50 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 28 H 0.08 1.37 7.46 -51.93 -0.39 0.99 16 29 H 0.05 0.61 7.22 -51.93 -0.37 0.24 16 30 H 0.10 1.83 5.51 -51.93 -0.29 1.54 16 31 H 0.08 1.28 5.16 -51.93 -0.27 1.02 16 32 H 0.20 2.32 4.67 -52.49 -0.24 2.07 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.12 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.38 9.33 5.29 -40.82 -0.22 9.12 16 38 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 311.56 15.07 4.70 4.70 Total: -1.00 -33.89 311.56 -5.51 -39.40 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -5.12 Total: 7.49 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 0.84 Total: 7.25 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.02 Total: -54.76 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.88 Total: -21.58 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.89 -5.51 -39.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755575880.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.429 kcal (2) G-P(sol) polarization free energy of solvation -33.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds