Wall clock time and date at job start Mon Mar 30 2020 02:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47082 * 2 1 4 4 C 1.53000 * 109.47372 * 120.00034 * 2 1 3 5 5 N 1.46500 * 109.47305 * 175.00315 * 4 2 1 6 6 C 1.46501 * 119.99547 * 269.99800 * 5 4 2 7 7 C 1.34770 * 120.00155 * 90.00094 * 5 4 2 8 8 O 1.21738 * 120.00139 * 357.47240 * 7 5 4 9 9 C 1.46379 * 120.00166 * 177.74935 * 7 5 4 10 10 C 1.33968 * 119.22876 * 329.02531 * 9 7 5 11 11 O 1.35003 * 121.68789 * 180.02562 * 10 9 7 12 12 C 1.43242 * 116.83335 * 343.34886 * 11 10 9 13 13 C 1.53554 * 108.08607 * 45.23875 * 12 11 10 14 14 O 1.36220 * 119.23230 * 149.28863 * 9 7 5 15 15 N 1.46502 * 109.47114 * 240.00329 * 2 1 3 16 16 C 1.36937 * 120.00218 * 85.00217 * 15 2 1 17 17 H 1.08000 * 119.99852 * 359.97438 * 16 15 2 18 18 C 1.38807 * 119.99832 * 180.02562 * 16 15 2 19 19 N 1.31614 * 120.00202 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99881 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47402 * 59.99579 * 20 18 16 22 22 H 1.48497 * 109.47383 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47225 * 299.99612 * 20 18 16 24 24 H 1.09000 * 109.47127 * 59.99780 * 1 2 3 25 25 H 1.08995 * 109.46710 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46855 * 300.00009 * 1 2 3 27 27 H 1.08993 * 109.47096 * 54.99701 * 4 2 1 28 28 H 1.09004 * 109.47054 * 295.00101 * 4 2 1 29 29 H 1.08997 * 109.46921 * 276.16989 * 6 5 4 30 30 H 1.08998 * 109.47234 * 36.17250 * 6 5 4 31 31 H 1.09006 * 109.46805 * 156.16757 * 6 5 4 32 32 H 1.07998 * 119.16268 * 0.36590 * 10 9 7 33 33 H 1.09000 * 109.74080 * 285.59179 * 12 11 10 34 34 H 1.09001 * 109.74470 * 164.88481 * 12 11 10 35 35 H 1.09000 * 109.75578 * 182.22037 * 13 12 11 36 36 H 1.09000 * 109.79554 * 61.49658 * 13 12 11 37 37 H 0.97000 * 119.99538 * 264.99427 * 15 2 1 38 38 H 0.97008 * 119.99923 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1906 6 6 4.1259 -1.9919 0.5612 7 6 4.2676 0.1492 1.7156 8 8 3.7484 1.1393 2.1974 9 6 5.7257 0.0211 1.7011 10 6 6.2760 -1.1982 1.7735 11 8 7.6145 -1.3737 1.7645 12 6 8.4083 -0.2706 1.3120 13 6 7.8723 1.0063 1.9754 14 8 6.4914 1.1448 1.6197 15 7 2.0183 -0.6905 -1.1962 16 6 2.1492 -0.0074 -2.3758 17 1 1.8920 1.0404 -2.4243 18 6 2.6114 -0.6619 -3.5092 19 7 2.9243 -1.9389 -3.4502 20 14 2.7892 0.2699 -5.1185 21 1 3.7445 1.3924 -4.9377 22 1 3.2982 -0.6485 -6.1686 23 1 1.4666 0.8066 -5.5284 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3632 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6055 -1.7197 1.2952 28 1 1.7517 -0.1583 2.1370 29 1 4.1824 -2.8074 1.2821 30 1 3.5303 -2.3054 -0.2961 31 1 5.1306 -1.7299 0.2293 32 1 5.6324 -2.0632 1.8352 33 1 8.3321 -0.1823 0.2283 34 1 9.4491 -0.4244 1.5971 35 1 8.4332 1.8701 1.6188 36 1 7.9668 0.9272 3.0584 37 1 2.2491 -1.6317 -1.1526 38 1 3.2477 -2.3962 -4.2423 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755575880.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:01 Heat of formation + Delta-G solvation = -74.891500 kcal Electronic energy + Delta-G solvation = -21809.640413 eV Core-core repulsion = 18461.118710 eV Total energy + Delta-G solvation = -3348.521703 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.23374 -40.62111 -38.24750 -37.65778 -36.08964 -34.23465 -32.82292 -30.78418 -29.92105 -28.27166 -27.20949 -26.05824 -25.42683 -22.43994 -21.56855 -20.51429 -19.34801 -19.30189 -18.50378 -17.57540 -17.37276 -16.63162 -16.51978 -16.10551 -15.77698 -15.62312 -15.34662 -15.15512 -14.86426 -14.59342 -13.94550 -13.85470 -13.64291 -13.21470 -13.10713 -12.92417 -12.79255 -12.65665 -12.49916 -12.22232 -11.93856 -11.89002 -11.68229 -11.59145 -11.03819 -10.90262 -9.68368 -9.15666 -8.93029 -7.92439 -5.17172 0.33921 1.45584 1.46516 1.51315 1.52786 2.11578 2.20662 2.56275 2.67148 3.41129 3.41579 3.58367 3.86009 3.93317 3.97749 4.08211 4.21043 4.22277 4.40659 4.44174 4.53572 4.61511 4.65526 4.71549 4.84228 4.88531 4.98085 5.18206 5.27195 5.35553 5.52505 5.63651 5.77190 6.22368 6.31977 6.41270 7.07407 7.38773 8.10987 8.40806 9.29797 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.016562 B = 0.006415 C = 0.005357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.186323 B = 4363.813298 C = 5225.262272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.149 3.851 3 H 0.017 0.983 4 C 0.118 3.882 5 N -0.584 5.584 6 C 0.059 3.941 7 C 0.567 3.433 8 O -0.581 6.581 9 C -0.104 4.104 10 C 0.020 3.980 11 O -0.304 6.304 12 C 0.010 3.990 13 C 0.011 3.989 14 O -0.326 6.326 15 N -0.723 5.723 16 C -0.237 4.237 17 H 0.057 0.943 18 C -0.063 4.063 19 N -0.957 5.957 20 Si 0.959 3.041 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.283 1.283 24 H 0.034 0.966 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.107 0.893 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.216 0.784 33 H 0.077 0.923 34 H 0.161 0.839 35 H 0.144 0.856 36 H 0.084 0.916 37 H 0.380 0.620 38 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.418 -2.271 12.560 15.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.040 3.960 3 H 0.035 0.965 4 C -0.005 4.005 5 N -0.315 5.315 6 C -0.083 4.083 7 C 0.357 3.643 8 O -0.463 6.463 9 C -0.153 4.153 10 C -0.046 4.046 11 O -0.216 6.216 12 C -0.065 4.065 13 C -0.063 4.063 14 O -0.241 6.241 15 N -0.366 5.366 16 C -0.369 4.369 17 H 0.075 0.925 18 C -0.256 4.256 19 N -0.608 5.608 20 Si 0.789 3.211 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.209 1.209 24 H 0.053 0.947 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.125 0.875 28 H 0.108 0.892 29 H 0.121 0.879 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.232 0.768 33 H 0.095 0.905 34 H 0.179 0.821 35 H 0.162 0.838 36 H 0.102 0.898 37 H 0.215 0.785 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.214 -1.627 12.673 15.752 hybrid contribution 0.170 0.590 -1.321 1.457 sum 9.384 -1.037 11.352 14.765 Atomic orbital electron populations 1.22196 0.96458 1.01743 1.00715 1.20809 0.93563 0.94691 0.86945 0.96504 1.21869 0.77976 1.02708 0.97927 1.47458 1.06925 1.21493 1.55590 1.22612 0.99732 0.87094 0.98842 1.17555 0.85800 0.82627 0.78341 1.90749 1.75383 1.31027 1.49126 1.20184 0.91252 0.87358 1.16473 1.24253 0.84840 0.96982 0.98492 1.86094 1.14771 1.40418 1.80323 1.24027 0.97448 0.85139 0.99884 1.23997 0.79573 1.01507 1.01262 1.86342 1.22410 1.30852 1.84517 1.42509 1.78473 1.10251 1.05415 1.19386 1.35174 0.93607 0.88737 0.92531 1.25256 1.03022 0.96896 1.00391 1.69717 1.52433 1.09354 1.29261 0.85439 0.77628 0.77453 0.80575 1.21585 1.21578 1.20930 0.94671 0.92188 0.91370 0.87503 0.89190 0.87933 0.90859 0.90412 0.76812 0.90496 0.82111 0.83789 0.89762 0.78473 0.93974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.37 9.49 71.98 0.68 -4.68 16 2 C 0.15 6.18 3.20 44.99 0.14 6.32 16 3 H 0.02 0.81 8.08 -2.39 -0.02 0.80 16 4 C 0.12 3.93 5.05 86.38 0.44 4.36 16 5 N -0.58 -20.03 2.73 -851.84 -2.32 -22.36 16 6 C 0.06 1.72 8.42 127.77 1.08 2.79 16 7 C 0.57 22.16 7.46 86.36 0.64 22.80 16 8 O -0.58 -26.95 16.64 6.38 0.11 -26.85 16 9 C -0.10 -3.53 6.14 23.42 0.14 -3.39 16 10 C 0.02 0.53 8.45 66.85 0.56 1.09 16 11 O -0.30 -6.90 10.47 -69.25 -0.72 -7.62 16 12 C 0.01 0.17 7.30 72.17 0.53 0.70 16 13 C 0.01 0.24 7.31 72.17 0.53 0.76 16 14 O -0.33 -11.16 10.41 -73.45 -0.76 -11.93 16 15 N -0.72 -35.33 4.55 -322.94 -1.47 -36.80 16 16 C -0.24 -13.29 9.93 84.03 0.83 -12.45 16 17 H 0.06 3.23 7.83 -2.91 -0.02 3.21 16 18 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 19 N -0.96 -55.45 13.06 21.65 0.28 -55.17 16 20 Si 0.96 46.55 29.55 68.60 2.03 48.58 16 21 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 22 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 23 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 24 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.11 2.91 8.07 -2.39 -0.02 2.90 16 28 H 0.09 2.90 7.46 -2.38 -0.02 2.88 16 29 H 0.10 1.98 7.22 -2.39 -0.02 1.96 16 30 H 0.07 2.61 5.51 -2.39 -0.01 2.59 16 31 H 0.08 2.33 5.16 -2.38 -0.01 2.31 16 32 H 0.22 4.46 4.67 -2.91 -0.01 4.44 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.16 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.14 2.09 8.14 -2.39 -0.02 2.08 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 37 H 0.38 18.65 5.29 -92.71 -0.49 18.16 16 38 H 0.25 14.24 8.31 -92.70 -0.77 13.47 16 Total: -1.00 -75.38 311.56 3.77 -71.61 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.59 Total: 25.30 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: 6.05 Total: 15.24 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -3.51 Total: -114.32 kcal Atomic # 8 Polarization: -45.01 SS G_CDS: -1.38 Total: -46.40 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -75.38 3.77 -71.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755575880.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.283 kcal (2) G-P(sol) polarization free energy of solvation -75.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds