Wall clock time and date at job start Mon Mar 30 2020 01:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39652 * 120.15146 * 288.44643 * 3 2 1 5 5 C 1.37931 * 119.84078 * 180.29667 * 4 3 2 6 6 C 1.38378 * 120.15309 * 359.70018 * 5 4 3 7 7 C 1.38342 * 120.30850 * 0.02562 * 6 5 4 8 8 C 1.37965 * 120.15021 * 0.02562 * 7 6 5 9 9 C 1.50693 * 120.07838 * 179.97438 * 8 7 6 10 10 N 1.46503 * 109.47663 * 260.00854 * 9 8 7 11 11 C 1.36942 * 119.99374 * 270.00199 * 10 9 8 12 12 H 1.08005 * 119.99840 * 134.01945 * 11 10 9 13 13 C 1.38807 * 120.00049 * 314.01121 * 11 10 9 14 14 N 1.31619 * 120.00153 * 352.46593 * 13 11 10 15 15 Si 1.86804 * 119.99952 * 172.46028 * 13 11 10 16 16 H 1.48501 * 109.46778 * 60.00376 * 15 13 11 17 17 H 1.48501 * 109.47193 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47101 * 300.00793 * 15 13 11 19 19 C 1.46499 * 120.00311 * 89.99736 * 10 9 8 20 20 C 1.55231 * 110.57784 * 239.89216 * 19 10 9 21 21 C 1.54890 * 102.58710 * 203.33736 * 20 19 10 22 22 C 1.54266 * 104.31245 * 37.92946 * 21 20 19 23 23 C 1.53873 * 106.60002 * 336.32947 * 22 21 20 24 24 H 1.07988 * 120.07870 * 359.97438 * 4 3 2 25 25 H 1.07996 * 119.91807 * 179.72410 * 5 4 3 26 26 H 1.08003 * 119.84574 * 180.02562 * 6 5 4 27 27 H 1.08004 * 119.92338 * 180.02562 * 7 6 5 28 28 H 1.09000 * 109.47311 * 140.00284 * 9 8 7 29 29 H 1.09003 * 109.47274 * 20.00877 * 9 8 7 30 30 H 0.97003 * 120.00150 * 179.97438 * 14 13 11 31 31 H 1.09000 * 110.43045 * 2.47530 * 19 10 9 32 32 H 1.08998 * 110.90093 * 85.04851 * 20 19 10 33 33 H 1.09001 * 110.77079 * 321.56752 * 20 19 10 34 34 H 1.09009 * 110.48602 * 279.19310 * 21 20 19 35 35 H 1.08994 * 110.48925 * 156.67607 * 21 20 19 36 36 H 1.09004 * 110.03051 * 95.61265 * 22 21 20 37 37 H 1.08996 * 110.03700 * 216.99081 * 22 21 20 38 38 H 1.09000 * 110.03776 * 119.27779 * 23 22 21 39 39 H 1.09003 * 110.03178 * 240.66315 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2697 -0.3811 1.1455 5 6 4.6490 -0.3723 1.1404 6 6 5.3374 0.0078 0.0018 7 6 4.6487 0.3817 -1.1383 8 6 3.2691 0.3785 -1.1468 9 6 2.5205 0.7866 -2.3893 10 7 2.0643 2.1720 -2.2518 11 6 0.8382 2.4376 -1.7027 12 1 0.7372 3.2110 -0.9556 13 6 -0.2748 1.7131 -2.1065 14 7 -0.1838 0.8763 -3.1184 15 14 -1.9018 1.9254 -1.2136 16 1 -2.3398 3.3409 -1.3129 17 1 -2.9251 1.0455 -1.8332 18 1 -1.7338 1.5585 0.2155 19 6 2.9196 3.2731 -2.7016 20 6 3.2541 4.2220 -1.5195 21 6 3.5940 5.5508 -2.2391 22 6 2.5927 5.6169 -3.4108 23 6 2.1639 4.1687 -3.7048 24 1 2.7336 -0.6776 2.0349 25 1 5.1928 -0.6630 2.0270 26 1 6.4174 0.0125 0.0031 27 1 5.1923 0.6768 -2.0237 28 1 1.6595 0.1324 -2.5263 29 1 3.1796 0.7053 -3.2538 30 1 -0.9615 0.3697 -3.4003 31 1 3.8344 2.8855 -3.1499 32 1 4.1137 3.8559 -0.9582 33 1 2.3898 4.3462 -0.8670 34 1 4.6178 5.5311 -2.6129 35 1 3.4506 6.3964 -1.5666 36 1 1.7252 6.2130 -3.1275 37 1 3.0727 6.0503 -4.2882 38 1 1.0883 4.0618 -3.5641 39 1 2.4352 3.8987 -4.7254 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080214871.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:30 Heat of formation + Delta-G solvation = 53.275356 kcal Electronic energy + Delta-G solvation = -21149.232701 eV Core-core repulsion = 18249.410745 eV Total energy + Delta-G solvation = -2899.821957 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.39116 -38.99777 -37.08488 -36.01452 -33.45371 -31.94824 -31.85717 -29.30040 -28.24377 -27.48832 -24.66925 -24.07483 -22.12789 -21.24599 -20.73148 -19.41574 -18.13057 -17.19689 -16.60304 -16.50075 -16.17509 -15.78183 -15.30880 -15.23804 -14.52683 -14.47522 -14.10111 -14.02881 -13.96481 -13.60029 -13.06058 -13.01418 -12.90355 -12.85377 -12.42070 -12.20872 -11.97270 -11.85923 -11.81466 -11.73046 -11.67295 -11.53818 -11.15434 -11.07408 -10.46604 -9.64706 -9.44519 -8.39074 -7.79587 -5.54471 0.15393 0.65967 1.27196 1.37513 1.51324 2.18962 2.37729 2.53631 3.18476 3.32394 3.42080 3.78773 4.04089 4.06309 4.13913 4.25801 4.35358 4.39995 4.61440 4.70937 4.79470 4.81473 4.93127 4.94515 4.98221 5.02206 5.09666 5.25782 5.26566 5.31963 5.36619 5.55512 5.59593 5.62998 5.67975 5.71451 5.73402 5.82373 5.92596 6.20136 6.53522 6.99958 7.24740 7.89645 8.42123 9.08411 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.012697 B = 0.010778 C = 0.006723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.789779 B = 2597.185013 C = 4164.115420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.273 3.727 3 C -0.044 4.044 4 C -0.081 4.081 5 C -0.129 4.129 6 C -0.083 4.083 7 C -0.126 4.126 8 C -0.048 4.048 9 C 0.168 3.832 10 N -0.577 5.577 11 C -0.238 4.238 12 H 0.034 0.966 13 C 0.009 3.991 14 N -0.903 5.903 15 Si 0.927 3.073 16 H -0.296 1.296 17 H -0.307 1.307 18 H -0.266 1.266 19 C 0.169 3.831 20 C -0.127 4.127 21 C -0.111 4.111 22 C -0.115 4.115 23 C -0.130 4.130 24 H 0.135 0.865 25 H 0.162 0.838 26 H 0.161 0.839 27 H 0.138 0.862 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.244 0.756 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.037 0.963 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.046 0.954 37 H 0.074 0.926 38 H 0.036 0.964 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.179 1.243 4.733 16.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.040 4.040 3 C -0.049 4.049 4 C -0.101 4.101 5 C -0.147 4.147 6 C -0.101 4.101 7 C -0.145 4.145 8 C -0.053 4.053 9 C 0.042 3.958 10 N -0.295 5.295 11 C -0.369 4.369 12 H 0.052 0.948 13 C -0.190 4.190 14 N -0.546 5.546 15 Si 0.759 3.241 16 H -0.224 1.224 17 H -0.234 1.234 18 H -0.192 1.192 19 C 0.063 3.937 20 C -0.166 4.166 21 C -0.149 4.149 22 C -0.153 4.153 23 C -0.170 4.170 24 H 0.153 0.847 25 H 0.180 0.820 26 H 0.178 0.822 27 H 0.156 0.844 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.055 0.945 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.268 1.133 4.612 15.037 hybrid contribution -1.650 -0.002 0.119 1.654 sum 12.618 1.131 4.731 13.523 Atomic orbital electron populations 1.80842 1.13974 1.10725 1.09177 1.26009 0.93394 0.92392 0.92158 1.16235 0.83388 1.07917 0.97320 1.21325 0.95638 0.97520 0.95646 1.21322 0.92407 1.00979 0.99949 1.21689 1.01532 0.95177 0.91750 1.21180 0.91833 1.01290 1.00208 1.21197 0.95120 0.93019 0.95990 1.19985 0.96701 0.88110 0.90976 1.43772 1.15386 0.99972 1.70376 1.18462 0.84737 1.18155 1.15528 0.94832 1.25580 0.98749 0.99104 0.95595 1.69900 1.28905 1.28646 1.27118 0.86057 0.82185 0.75249 0.80632 1.22390 1.23424 1.19180 1.21518 0.92066 0.87771 0.92335 1.22803 0.99513 0.96096 0.98186 1.22240 0.99267 0.96796 0.96576 1.22028 0.98671 0.95666 0.98927 1.22415 1.00400 0.95627 0.98527 0.84703 0.82047 0.82152 0.84377 0.91585 0.93466 0.94657 0.91252 0.91822 0.94453 0.90008 0.91622 0.93532 0.90765 0.94505 0.93621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -24.38 13.24 19.01 0.25 -24.13 16 2 C 0.27 12.66 11.93 88.33 1.05 13.71 16 3 C -0.04 -1.66 5.73 -21.36 -0.12 -1.79 16 4 C -0.08 -2.23 9.76 22.54 0.22 -2.01 16 5 C -0.13 -2.59 10.03 22.23 0.22 -2.37 16 6 C -0.08 -1.65 10.04 22.33 0.22 -1.42 16 7 C -0.13 -3.37 9.66 22.23 0.21 -3.15 16 8 C -0.05 -1.73 5.50 -19.60 -0.11 -1.84 16 9 C 0.17 7.44 4.98 85.63 0.43 7.86 16 10 N -0.58 -26.95 2.40 -675.72 -1.62 -28.57 16 11 C -0.24 -12.82 6.12 84.03 0.51 -12.30 16 12 H 0.03 1.94 6.71 -2.91 -0.02 1.92 16 13 C 0.01 0.50 3.43 84.86 0.29 0.79 16 14 N -0.90 -53.50 11.27 21.65 0.24 -53.25 16 15 Si 0.93 50.42 27.04 68.60 1.86 52.27 16 16 H -0.30 -15.78 7.11 99.48 0.71 -15.08 16 17 H -0.31 -17.14 7.11 99.48 0.71 -16.43 16 18 H -0.27 -14.60 6.34 99.48 0.63 -13.97 16 19 C 0.17 6.60 3.39 46.19 0.16 6.76 16 20 C -0.13 -4.38 6.47 32.01 0.21 -4.18 16 21 C -0.11 -3.07 6.82 31.67 0.22 -2.85 16 22 C -0.11 -3.56 6.80 31.32 0.21 -3.35 16 23 C -0.13 -5.15 6.41 31.32 0.20 -4.95 16 24 H 0.14 3.24 8.06 -2.92 -0.02 3.22 16 25 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 26 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 27 H 0.14 3.16 8.04 -2.91 -0.02 3.13 16 28 H 0.07 3.53 4.97 -2.39 -0.01 3.51 16 29 H 0.05 1.93 7.79 -2.39 -0.02 1.92 16 30 H 0.24 14.64 8.31 -92.71 -0.77 13.87 16 31 H 0.07 2.43 7.84 -2.39 -0.02 2.42 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.04 1.53 6.65 -2.39 -0.02 1.51 16 34 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.04 1.79 6.93 -2.39 -0.02 1.77 16 39 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -68.15 311.84 5.62 -62.53 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: 0.96 Total: 2.23 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 3.93 Total: -11.08 kcal Atomic # 7 Polarization: -104.82 SS G_CDS: -1.13 Total: -105.95 kcal Atomic # 14 Polarization: 50.42 SS G_CDS: 1.86 Total: 52.27 kcal Total: -68.15 5.62 -62.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080214871.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.804 kcal (2) G-P(sol) polarization free energy of solvation -68.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds