Wall clock time and date at job start Mon Mar 30 2020 01:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34646 * 116.99994 * 2 1 4 4 O 1.21512 * 119.99560 * 0.02562 * 3 2 1 5 5 N 1.34770 * 120.00188 * 180.02562 * 3 2 1 6 6 C 1.46921 * 120.63304 * 0.02562 * 5 3 2 7 7 C 1.53189 * 108.77848 * 126.39025 * 6 5 3 8 8 C 1.53043 * 109.31190 * 54.63667 * 7 6 5 9 9 C 1.53048 * 109.53499 * 298.63859 * 8 7 6 10 10 H 1.08999 * 109.49583 * 301.37607 * 9 8 7 11 11 C 1.50703 * 109.49610 * 181.31869 * 9 8 7 12 12 O 1.21298 * 119.99577 * 0.05917 * 11 9 8 13 13 N 1.34774 * 120.00019 * 180.02562 * 11 9 8 14 14 C 1.46498 * 120.00008 * 359.97438 * 13 11 9 15 15 C 1.37098 * 119.99964 * 179.97438 * 13 11 9 16 16 H 1.08002 * 120.00184 * 23.16018 * 15 13 11 17 17 C 1.38951 * 120.00178 * 203.16532 * 15 13 11 18 18 N 1.31407 * 119.99642 * 11.00581 * 17 15 13 19 19 Si 1.86800 * 120.00229 * 191.01157 * 17 15 13 20 20 H 1.48502 * 109.46867 * 89.99391 * 19 17 15 21 21 H 1.48496 * 109.46919 * 209.99680 * 19 17 15 22 22 H 1.48496 * 109.46879 * 329.99503 * 19 17 15 23 23 C 1.46937 * 120.60232 * 179.97438 * 5 3 2 24 24 H 1.09000 * 109.47969 * 59.99636 * 1 2 3 25 25 H 1.09004 * 109.47206 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47207 * 299.98990 * 1 2 3 27 27 H 1.09003 * 109.58722 * 6.60543 * 6 5 3 28 28 H 1.08996 * 109.70558 * 246.25024 * 6 5 3 29 29 H 1.09001 * 109.49822 * 294.68973 * 7 6 5 30 30 H 1.08993 * 109.50504 * 174.58994 * 7 6 5 31 31 H 1.08994 * 109.46131 * 178.62186 * 8 7 6 32 32 H 1.08997 * 109.44572 * 58.64764 * 8 7 6 33 33 H 1.09000 * 109.47350 * 92.00345 * 14 13 11 34 34 H 1.08995 * 109.46962 * 212.00276 * 14 13 11 35 35 H 1.09001 * 109.47073 * 331.99885 * 14 13 11 36 36 H 0.97003 * 120.00135 * 180.02562 * 18 17 15 37 37 H 1.09003 * 109.55903 * 113.80723 * 23 5 3 38 38 H 1.08993 * 109.61644 * 353.38246 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4013 2.2187 0.0005 5 7 3.4090 1.2703 -0.0005 6 6 4.2228 0.0471 -0.0017 7 6 5.2119 0.1138 -1.1696 8 6 6.0229 1.4081 -1.0726 9 6 5.0809 2.6106 -1.1678 10 1 4.5347 2.5711 -2.1103 11 6 5.8835 3.8845 -1.1048 12 8 7.0906 3.8360 -0.9957 13 7 5.2602 5.0777 -1.1705 14 6 3.8025 5.1362 -1.3036 15 6 5.9904 6.2366 -1.1126 16 1 7.0350 6.2310 -1.3869 17 6 5.3866 7.4184 -0.7010 18 7 4.1876 7.3912 -0.1640 19 14 6.2791 9.0459 -0.9113 20 1 5.9437 9.6268 -2.2362 21 1 5.8586 9.9831 0.1611 22 1 7.7445 8.8213 -0.8258 23 6 4.0898 2.5724 -0.0011 24 1 -0.3635 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 3.5758 -0.8222 -0.1201 28 1 4.7709 -0.0306 0.9373 29 1 4.6640 0.0976 -2.1117 30 1 5.8857 -0.7417 -1.1252 31 1 6.7443 1.4466 -1.8887 32 1 6.5508 1.4350 -0.1194 33 1 3.3493 5.1943 -0.3140 34 1 3.5257 6.0175 -1.8822 35 1 3.4480 4.2406 -1.8137 36 1 3.7658 8.2162 0.1230 37 1 4.6267 2.7040 0.9384 38 1 3.3555 3.3692 -0.1193 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104347201.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:31 Heat of formation + Delta-G solvation = -101.670789 kcal Electronic energy + Delta-G solvation = -21906.937999 eV Core-core repulsion = 18557.255059 eV Total energy + Delta-G solvation = -3349.682940 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.58774 -39.08763 -37.28499 -36.06080 -34.72143 -32.67051 -31.93081 -30.69499 -27.77383 -26.33680 -25.08237 -24.82681 -23.16868 -21.52931 -19.97987 -18.70368 -17.82280 -16.94124 -16.81905 -16.43588 -15.97510 -14.90959 -14.72623 -14.54174 -14.27264 -13.96134 -13.74287 -13.31937 -13.16696 -12.85889 -12.64128 -12.31472 -12.05655 -11.62393 -11.47251 -11.20125 -11.09547 -10.89191 -10.79808 -10.73283 -10.59223 -10.36137 -10.29397 -10.21692 -10.09504 -8.98512 -8.68391 -8.31530 -7.65694 -6.27811 -3.86068 2.22424 2.93387 3.18574 3.27285 3.32665 3.85345 3.98262 4.15496 4.73598 5.01190 5.04745 5.09117 5.12159 5.12459 5.17937 5.40363 5.43612 5.48869 5.63182 5.68551 5.90043 5.95713 6.03209 6.04119 6.14080 6.37491 6.38720 6.53634 6.56805 6.67172 6.92416 7.29841 7.45370 7.59115 8.15383 8.38848 8.50192 9.20423 9.44309 9.99291 10.75373 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024920 B = 0.005550 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.335247 B = 5043.423097 C = 6007.660457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.374 6.374 3 C 0.645 3.355 4 O -0.567 6.567 5 N -0.590 5.590 6 C 0.110 3.890 7 C -0.135 4.135 8 C -0.096 4.096 9 C -0.111 4.111 10 H 0.084 0.916 11 C 0.450 3.550 12 O -0.587 6.587 13 N -0.443 5.443 14 C 0.109 3.891 15 C -0.308 4.308 16 H 0.099 0.901 17 C 0.031 3.969 18 N -0.880 5.880 19 Si 0.927 3.073 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.269 1.269 23 C 0.125 3.875 24 H 0.062 0.938 25 H 0.099 0.901 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.028 0.972 36 H 0.268 0.732 37 H 0.075 0.925 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.096 -14.792 -0.377 16.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.289 6.289 3 C 0.399 3.601 4 O -0.455 6.455 5 N -0.330 5.330 6 C -0.012 4.012 7 C -0.173 4.173 8 C -0.134 4.134 9 C -0.134 4.134 10 H 0.102 0.898 11 C 0.237 3.763 12 O -0.472 6.472 13 N -0.161 5.161 14 C -0.034 4.034 15 C -0.436 4.436 16 H 0.116 0.884 17 C -0.172 4.172 18 N -0.519 5.519 19 Si 0.754 3.246 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.194 1.194 23 C 0.005 3.995 24 H 0.081 0.919 25 H 0.117 0.883 26 H 0.081 0.919 27 H 0.107 0.893 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.047 0.953 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.941 -14.348 -0.238 15.531 hybrid contribution -0.004 0.929 -0.063 0.932 sum -5.945 -13.418 -0.301 14.679 Atomic orbital electron populations 1.23143 0.74872 1.03045 1.02767 1.86208 1.23816 1.31426 1.87410 1.18053 0.83260 0.82045 0.76700 1.91024 1.64080 1.34705 1.55727 1.47023 1.01696 1.08798 1.75478 1.21753 0.93856 0.86389 0.99214 1.21979 0.98056 0.98877 0.98405 1.21279 0.96950 0.91473 1.03680 1.21515 0.96871 0.95618 0.99346 0.89799 1.19741 0.88197 0.84153 0.84209 1.90511 1.14352 1.86705 1.55629 1.43626 1.06263 1.04702 1.61475 1.21654 0.81232 0.98944 1.01596 1.19662 0.96283 0.84565 1.43106 0.88354 1.25361 0.96407 0.99960 0.95497 1.70001 1.14850 1.28354 1.38722 0.85914 0.79768 0.81110 0.77835 1.20403 1.20942 1.19376 1.22033 0.95743 0.83325 0.98446 0.91924 0.88298 0.91944 0.89329 0.91130 0.91620 0.90482 0.90918 0.91107 0.91801 0.91324 0.95319 0.92181 0.90670 0.86616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.55 10.56 101.05 1.07 1.62 16 2 O -0.37 -4.91 9.20 -40.34 -0.37 -5.28 16 3 C 0.65 10.52 8.43 54.05 0.46 10.97 16 4 O -0.57 -11.06 15.54 -19.28 -0.30 -11.36 16 5 N -0.59 -9.08 2.97 -178.59 -0.53 -9.62 16 6 C 0.11 1.31 6.45 -3.71 -0.02 1.29 16 7 C -0.13 -1.58 6.08 -26.61 -0.16 -1.74 16 8 C -0.10 -1.51 4.46 -26.68 -0.12 -1.63 16 9 C -0.11 -2.06 1.86 -91.68 -0.17 -2.23 16 10 H 0.08 1.51 7.40 -51.93 -0.38 1.13 16 11 C 0.45 10.91 7.03 -10.99 -0.08 10.84 16 12 O -0.59 -16.05 15.68 5.54 0.09 -15.96 16 13 N -0.44 -11.47 3.02 -122.19 -0.37 -11.83 16 14 C 0.11 2.55 7.04 59.85 0.42 2.98 16 15 C -0.31 -8.67 9.28 -14.93 -0.14 -8.80 16 16 H 0.10 2.88 7.42 -52.49 -0.39 2.49 16 17 C 0.03 0.83 5.12 -17.47 -0.09 0.75 16 18 N -0.88 -23.89 10.63 55.50 0.59 -23.30 16 19 Si 0.93 21.00 29.57 -169.99 -5.03 15.97 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 C 0.13 2.26 5.27 -3.74 -0.02 2.24 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.91 6.93 -51.93 -0.36 0.55 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 32 H 0.07 1.17 8.13 -51.93 -0.42 0.74 16 33 H 0.06 1.57 6.60 -51.93 -0.34 1.23 16 34 H 0.07 1.69 7.09 -51.93 -0.37 1.32 16 35 H 0.03 0.59 5.80 -51.93 -0.30 0.29 16 36 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 38 H 0.12 2.33 3.62 -51.93 -0.19 2.15 16 LS Contribution 305.84 15.07 4.61 4.61 Total: -1.00 -32.73 305.84 -5.43 -38.17 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.27 Total: 2.34 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: 1.14 Total: 16.26 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -0.31 Total: -44.75 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.58 Total: -32.60 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.73 -5.43 -38.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104347201.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.503 kcal (2) G-P(sol) polarization free energy of solvation -32.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds