Wall clock time and date at job start Mon Mar 30 2020 01:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34646 * 116.99994 * 2 1 4 4 O 1.21512 * 119.99560 * 0.02562 * 3 2 1 5 5 N 1.34770 * 120.00188 * 180.02562 * 3 2 1 6 6 C 1.46921 * 120.63304 * 0.02562 * 5 3 2 7 7 C 1.53189 * 108.77848 * 126.39025 * 6 5 3 8 8 C 1.53043 * 109.31190 * 54.63667 * 7 6 5 9 9 C 1.53048 * 109.53499 * 298.63859 * 8 7 6 10 10 H 1.08999 * 109.49583 * 301.37607 * 9 8 7 11 11 C 1.50703 * 109.49610 * 181.31869 * 9 8 7 12 12 O 1.21298 * 119.99577 * 0.05917 * 11 9 8 13 13 N 1.34774 * 120.00019 * 180.02562 * 11 9 8 14 14 C 1.46498 * 120.00008 * 359.97438 * 13 11 9 15 15 C 1.37098 * 119.99964 * 179.97438 * 13 11 9 16 16 H 1.08002 * 120.00184 * 23.16018 * 15 13 11 17 17 C 1.38951 * 120.00178 * 203.16532 * 15 13 11 18 18 N 1.31407 * 119.99642 * 11.00581 * 17 15 13 19 19 Si 1.86800 * 120.00229 * 191.01157 * 17 15 13 20 20 H 1.48502 * 109.46867 * 89.99391 * 19 17 15 21 21 H 1.48496 * 109.46919 * 209.99680 * 19 17 15 22 22 H 1.48496 * 109.46879 * 329.99503 * 19 17 15 23 23 C 1.46937 * 120.60232 * 179.97438 * 5 3 2 24 24 H 1.09000 * 109.47969 * 59.99636 * 1 2 3 25 25 H 1.09004 * 109.47206 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47207 * 299.98990 * 1 2 3 27 27 H 1.09003 * 109.58722 * 6.60543 * 6 5 3 28 28 H 1.08996 * 109.70558 * 246.25024 * 6 5 3 29 29 H 1.09001 * 109.49822 * 294.68973 * 7 6 5 30 30 H 1.08993 * 109.50504 * 174.58994 * 7 6 5 31 31 H 1.08994 * 109.46131 * 178.62186 * 8 7 6 32 32 H 1.08997 * 109.44572 * 58.64764 * 8 7 6 33 33 H 1.09000 * 109.47350 * 92.00345 * 14 13 11 34 34 H 1.08995 * 109.46962 * 212.00276 * 14 13 11 35 35 H 1.09001 * 109.47073 * 331.99885 * 14 13 11 36 36 H 0.97003 * 120.00135 * 180.02562 * 18 17 15 37 37 H 1.09003 * 109.55903 * 113.80723 * 23 5 3 38 38 H 1.08993 * 109.61644 * 353.38246 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4013 2.2187 0.0005 5 7 3.4090 1.2703 -0.0005 6 6 4.2228 0.0471 -0.0017 7 6 5.2119 0.1138 -1.1696 8 6 6.0229 1.4081 -1.0726 9 6 5.0809 2.6106 -1.1678 10 1 4.5347 2.5711 -2.1103 11 6 5.8835 3.8845 -1.1048 12 8 7.0906 3.8360 -0.9957 13 7 5.2602 5.0777 -1.1705 14 6 3.8025 5.1362 -1.3036 15 6 5.9904 6.2366 -1.1126 16 1 7.0350 6.2310 -1.3869 17 6 5.3866 7.4184 -0.7010 18 7 4.1876 7.3912 -0.1640 19 14 6.2791 9.0459 -0.9113 20 1 5.9437 9.6268 -2.2362 21 1 5.8586 9.9831 0.1611 22 1 7.7445 8.8213 -0.8258 23 6 4.0898 2.5724 -0.0011 24 1 -0.3635 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 3.5758 -0.8222 -0.1201 28 1 4.7709 -0.0306 0.9373 29 1 4.6640 0.0976 -2.1117 30 1 5.8857 -0.7417 -1.1252 31 1 6.7443 1.4466 -1.8887 32 1 6.5508 1.4350 -0.1194 33 1 3.3493 5.1943 -0.3140 34 1 3.5257 6.0175 -1.8822 35 1 3.4480 4.2406 -1.8137 36 1 3.7658 8.2162 0.1230 37 1 4.6267 2.7040 0.9384 38 1 3.3555 3.3692 -0.1193 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104347201.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:30 Heat of formation + Delta-G solvation = -123.943161 kcal Electronic energy + Delta-G solvation = -21907.903801 eV Core-core repulsion = 18557.255059 eV Total energy + Delta-G solvation = -3350.648742 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.85952 -40.73442 -38.69760 -37.30042 -36.72696 -34.11878 -33.70357 -32.17786 -28.68783 -28.28191 -26.83215 -26.14142 -24.67611 -22.78388 -21.28516 -20.34357 -19.16344 -18.81215 -18.12048 -17.87994 -17.53065 -16.55176 -16.39176 -16.03586 -15.68382 -15.21403 -15.02414 -14.96078 -14.44659 -14.32122 -13.94016 -13.85612 -13.47813 -13.22218 -13.08893 -12.88838 -12.65147 -12.53817 -12.28950 -12.16461 -11.98944 -11.88512 -11.76631 -11.57292 -11.48288 -11.01117 -10.38903 -9.84473 -9.72280 -8.33600 -6.01321 1.05794 1.37542 1.40523 1.53484 1.68043 1.98846 2.26562 2.88431 3.04863 3.07514 3.72872 3.77923 3.88438 4.05340 4.17593 4.23882 4.40223 4.40931 4.45978 4.57301 4.59261 4.69929 4.73437 4.82328 4.92168 4.96207 5.04524 5.21403 5.26489 5.33640 5.35993 5.43147 5.43416 6.07562 6.25897 6.44252 7.13582 7.17399 7.43046 7.98277 8.68196 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024920 B = 0.005550 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.335247 B = 5043.423097 C = 6007.660457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.365 6.365 3 C 0.644 3.356 4 O -0.607 6.607 5 N -0.588 5.588 6 C 0.106 3.894 7 C -0.122 4.122 8 C -0.093 4.093 9 C -0.098 4.098 10 H 0.094 0.906 11 C 0.443 3.557 12 O -0.623 6.623 13 N -0.459 5.459 14 C 0.129 3.871 15 C -0.346 4.346 16 H 0.076 0.924 17 C -0.003 4.003 18 N -0.898 5.898 19 Si 0.993 3.007 20 H -0.266 1.266 21 H -0.274 1.274 22 H -0.273 1.273 23 C 0.136 3.864 24 H 0.058 0.942 25 H 0.142 0.858 26 H 0.057 0.943 27 H 0.114 0.886 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.273 0.727 37 H 0.066 0.934 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.736 -16.656 -0.580 17.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.278 6.278 3 C 0.399 3.601 4 O -0.498 6.498 5 N -0.328 5.328 6 C -0.014 4.014 7 C -0.160 4.160 8 C -0.131 4.131 9 C -0.121 4.121 10 H 0.112 0.888 11 C 0.232 3.768 12 O -0.511 6.511 13 N -0.177 5.177 14 C -0.014 4.014 15 C -0.474 4.474 16 H 0.094 0.906 17 C -0.205 4.205 18 N -0.537 5.537 19 Si 0.816 3.184 20 H -0.191 1.191 21 H -0.199 1.199 22 H -0.198 1.198 23 C 0.013 3.987 24 H 0.077 0.923 25 H 0.160 0.840 26 H 0.076 0.924 27 H 0.132 0.868 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.130 0.870 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.607 -16.264 -0.444 17.560 hybrid contribution 0.161 1.439 0.027 1.449 sum -6.446 -14.825 -0.417 16.171 Atomic orbital electron populations 1.23514 0.72905 1.05714 1.02404 1.86222 1.25590 1.29184 1.86822 1.18195 0.83342 0.82440 0.76095 1.91001 1.65053 1.36322 1.57449 1.46984 1.01890 1.08817 1.75081 1.22065 0.93997 0.85417 0.99967 1.21936 0.97989 0.97440 0.98614 1.21285 0.96686 0.92277 1.02831 1.21438 0.96948 0.93695 0.99995 0.88824 1.20722 0.88261 0.85440 0.82388 1.90471 1.16230 1.87555 1.56816 1.43869 1.07034 1.04931 1.61898 1.21452 0.79961 0.99363 1.00623 1.19665 0.95969 0.86396 1.45335 0.90635 1.26156 0.97141 1.02757 0.94460 1.70089 1.15703 1.29448 1.38426 0.84943 0.78196 0.76830 0.78431 1.19098 1.19888 1.19788 1.21624 0.94910 0.84523 0.97594 0.92322 0.84036 0.92408 0.86784 0.89862 0.91027 0.86992 0.91764 0.92099 0.93387 0.92981 0.92648 0.91690 0.91614 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.82 10.56 113.37 1.20 2.02 16 2 O -0.36 -8.56 9.20 -55.56 -0.51 -9.07 16 3 C 0.64 20.05 8.43 129.79 1.09 21.14 16 4 O -0.61 -23.55 15.54 19.80 0.31 -23.25 16 5 N -0.59 -17.11 2.97 -949.36 -2.82 -19.93 16 6 C 0.11 2.16 6.45 86.36 0.56 2.71 16 7 C -0.12 -2.43 6.08 30.67 0.19 -2.24 16 8 C -0.09 -2.79 4.46 30.62 0.14 -2.66 16 9 C -0.10 -3.64 1.86 -11.48 -0.02 -3.66 16 10 H 0.09 3.29 7.40 -2.39 -0.02 3.27 16 11 C 0.44 22.06 7.03 87.66 0.62 22.68 16 12 O -0.62 -35.20 15.68 -3.09 -0.05 -35.25 16 13 N -0.46 -24.57 3.02 -658.89 -1.99 -26.56 16 14 C 0.13 6.20 7.04 127.77 0.90 7.10 16 15 C -0.35 -20.12 9.28 84.04 0.78 -19.34 16 16 H 0.08 4.64 7.42 -2.91 -0.02 4.62 16 17 C 0.00 -0.19 5.12 84.93 0.43 0.25 16 18 N -0.90 -49.46 10.63 21.66 0.23 -49.23 16 19 Si 0.99 43.43 29.57 68.60 2.03 45.46 16 20 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 23 C 0.14 4.89 5.27 86.34 0.46 5.34 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 25 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.11 1.82 6.93 -2.39 -0.02 1.80 16 28 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 32 H 0.06 1.95 8.13 -2.39 -0.02 1.93 16 33 H 0.05 2.44 6.60 -2.39 -0.02 2.43 16 34 H 0.05 2.62 7.09 -2.39 -0.02 2.61 16 35 H 0.06 2.31 5.80 -2.39 -0.01 2.29 16 36 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 37 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.09 3.80 3.62 -2.39 -0.01 3.79 16 Total: -1.00 -73.35 305.84 4.60 -68.75 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 1.06 Total: 15.74 kcal Atomic # 6 Polarization: 27.01 SS G_CDS: 6.34 Total: 33.35 kcal Atomic # 7 Polarization: -91.14 SS G_CDS: -4.58 Total: -95.72 kcal Atomic # 8 Polarization: -67.32 SS G_CDS: -0.25 Total: -67.57 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -73.35 4.60 -68.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104347201.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.189 kcal (2) G-P(sol) polarization free energy of solvation -73.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds