Wall clock time and date at job start Mon Mar 30 2020 01:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34641 * 116.99999 * 2 1 4 4 O 1.21504 * 120.00061 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99844 * 180.02562 * 3 2 1 6 6 C 1.46497 * 119.99672 * 179.97438 * 5 3 2 7 7 C 1.50698 * 109.47005 * 179.97438 * 6 5 3 8 8 O 1.21292 * 120.00050 * 353.87925 * 7 6 5 9 9 N 1.34783 * 120.00031 * 173.87537 * 7 6 5 10 10 C 1.37091 * 119.99978 * 356.29467 * 9 7 6 11 11 H 1.08003 * 120.00424 * 232.11784 * 10 9 7 12 12 C 1.38957 * 120.00281 * 52.11570 * 10 9 7 13 13 N 1.31415 * 119.99574 * 26.92898 * 12 10 9 14 14 Si 1.86792 * 120.00515 * 206.93078 * 12 10 9 15 15 H 1.48505 * 109.47081 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47482 * 119.99944 * 14 12 10 17 17 H 1.48499 * 109.47173 * 240.00095 * 14 12 10 18 18 C 1.46498 * 120.00117 * 176.01728 * 9 7 6 19 19 C 1.54262 * 110.03345 * 237.91275 * 18 9 7 20 20 C 1.54970 * 104.16020 * 217.13451 * 19 18 9 21 21 C 1.54895 * 102.77523 * 37.88766 * 20 19 18 22 22 C 1.53870 * 110.03404 * 120.69243 * 18 9 7 23 23 H 1.09000 * 109.46699 * 60.00173 * 1 2 3 24 24 H 1.09001 * 109.46749 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46865 * 299.99992 * 1 2 3 26 26 H 0.97002 * 120.00278 * 0.02562 * 5 3 2 27 27 H 1.09002 * 109.47168 * 59.99846 * 6 5 3 28 28 H 1.08997 * 109.47533 * 300.00152 * 6 5 3 29 29 H 0.96999 * 119.99777 * 184.88720 * 13 12 10 30 30 H 1.09004 * 110.01607 * 359.29715 * 18 9 7 31 31 H 1.09005 * 110.48832 * 335.78084 * 19 18 9 32 32 H 1.08998 * 110.49251 * 98.42355 * 19 18 9 33 33 H 1.08999 * 110.71898 * 279.57334 * 20 19 18 34 34 H 1.09004 * 110.92353 * 156.29247 * 20 19 18 35 35 H 1.08995 * 110.48518 * 203.40735 * 21 20 19 36 36 H 1.08994 * 110.59824 * 80.81339 * 21 20 19 37 37 H 1.09005 * 110.03066 * 238.57000 * 22 18 9 38 38 H 1.08998 * 110.03092 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2702 -0.0005 6 6 4.0743 2.5755 -0.0011 7 6 5.5682 2.3780 -0.0010 8 8 6.0326 1.2632 0.1115 9 7 6.3884 3.4403 -0.1260 10 6 5.8644 4.6907 -0.3294 11 1 6.2158 5.2963 -1.1516 12 6 4.8811 5.1790 0.5224 13 7 4.8132 4.7489 1.7624 14 14 3.6558 6.4465 -0.0949 15 1 3.9452 6.7633 -1.5166 16 1 2.2792 5.9017 0.0210 17 1 3.7692 7.6826 0.7201 18 6 7.8396 3.2596 -0.0384 19 6 8.4131 4.1317 1.0975 20 6 9.7750 4.6246 0.5463 21 6 9.4668 4.8797 -0.9501 22 6 8.5094 3.7345 -1.3397 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.9375 0.4566 -0.0013 27 1 3.7817 3.1327 0.8889 28 1 3.7811 3.1323 -0.8910 29 1 4.0852 5.0354 2.3358 30 1 8.0748 2.2105 0.1413 31 1 7.7549 4.9769 1.2991 32 1 8.5584 3.5367 1.9991 33 1 10.5378 3.8539 0.6576 34 1 10.0841 5.5461 1.0396 35 1 10.3809 4.8306 -1.5416 36 1 8.9795 5.8457 -1.0819 37 1 9.0703 2.9162 -1.7911 38 1 7.7547 4.0991 -2.0366 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125275779.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:23 Heat of formation + Delta-G solvation = -136.562778 kcal Electronic energy + Delta-G solvation = -21760.564588 eV Core-core repulsion = 18409.368618 eV Total energy + Delta-G solvation = -3351.195970 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.62572 -40.81435 -38.59198 -37.57533 -36.11766 -35.61304 -33.39459 -29.97157 -29.44143 -28.60110 -27.48925 -26.38548 -22.66173 -21.65027 -21.39486 -21.11650 -20.19673 -18.19373 -18.03468 -17.71414 -17.45662 -17.05085 -16.45430 -16.01376 -15.82275 -15.73049 -15.02645 -14.69474 -14.57752 -14.12166 -14.10222 -13.69438 -13.40467 -13.08645 -12.97170 -12.62282 -12.57878 -12.28780 -12.07235 -11.85744 -11.84698 -11.82775 -11.79595 -11.37164 -11.32925 -10.84911 -10.52852 -10.23477 -9.33439 -8.40552 -6.23915 1.11290 1.38689 1.51589 1.57201 1.64882 1.92815 2.28037 2.86450 2.88060 3.35683 3.87843 3.92244 4.13924 4.29098 4.35486 4.35795 4.48853 4.63315 4.65427 4.72811 4.79400 4.82972 4.84014 4.94796 5.05974 5.10589 5.18072 5.26915 5.29852 5.40418 5.51410 5.53535 5.66687 6.03798 6.34071 6.60321 6.88516 7.20493 7.49440 7.93476 8.59452 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.020391 B = 0.006460 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.847500 B = 4333.076526 C = 5287.846286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.373 6.373 3 C 0.646 3.354 4 O -0.607 6.607 5 N -0.692 5.692 6 C 0.135 3.865 7 C 0.488 3.512 8 O -0.628 6.628 9 N -0.437 5.437 10 C -0.348 4.348 11 H 0.095 0.905 12 C 0.027 3.973 13 N -0.868 5.868 14 Si 0.944 3.056 15 H -0.251 1.251 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.120 3.880 19 C -0.118 4.118 20 C -0.112 4.112 21 C -0.109 4.109 22 C -0.121 4.121 23 H 0.063 0.937 24 H 0.143 0.857 25 H 0.059 0.941 26 H 0.415 0.585 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.272 0.728 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.461 -2.637 -3.891 4.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.286 6.286 3 C 0.399 3.601 4 O -0.499 6.499 5 N -0.353 5.353 6 C 0.010 3.990 7 C 0.277 3.723 8 O -0.517 6.517 9 N -0.155 5.155 10 C -0.475 4.475 11 H 0.113 0.887 12 C -0.180 4.180 13 N -0.503 5.503 14 Si 0.768 3.232 15 H -0.174 1.174 16 H -0.212 1.212 17 H -0.202 1.202 18 C 0.017 3.983 19 C -0.157 4.157 20 C -0.149 4.149 21 C -0.147 4.147 22 C -0.160 4.160 23 H 0.081 0.919 24 H 0.161 0.839 25 H 0.078 0.922 26 H 0.253 0.747 27 H 0.117 0.883 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.300 -2.610 -3.658 4.504 hybrid contribution -0.870 0.335 0.286 0.975 sum -0.570 -2.276 -3.373 4.108 Atomic orbital electron populations 1.23564 0.72506 1.05878 1.02651 1.86257 1.26095 1.29331 1.86934 1.18095 0.83225 0.82516 0.76273 1.90959 1.65306 1.36046 1.57633 1.44489 1.03070 1.11105 1.76595 1.21166 0.90471 0.82669 1.04704 1.20287 0.88697 0.84291 0.78980 1.90464 1.77939 1.25141 1.58173 1.43546 1.04020 1.05951 1.61963 1.19424 1.22312 0.93865 1.11892 0.88731 1.26084 1.00369 0.98347 0.93158 1.70188 1.29946 1.45558 1.04627 0.85616 0.78770 0.78756 0.80026 1.17419 1.21230 1.20179 1.21904 0.81548 0.98708 0.96125 1.22508 0.97379 0.99389 0.96393 1.22423 0.95467 1.01175 0.95874 1.22237 0.98747 0.97686 0.96000 1.22348 0.98440 0.98878 0.96306 0.91860 0.83917 0.92223 0.74669 0.88325 0.89857 0.91837 0.91935 0.91863 0.94016 0.90586 0.90757 0.89659 0.92100 0.91147 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.10 10.56 113.37 1.20 2.30 16 2 O -0.37 -12.22 10.62 -55.50 -0.59 -12.81 16 3 C 0.65 26.44 8.75 129.79 1.14 27.58 16 4 O -0.61 -28.26 16.13 19.83 0.32 -27.94 16 5 N -0.69 -29.44 5.53 -594.62 -3.29 -32.73 16 6 C 0.14 6.44 4.31 85.63 0.37 6.81 16 7 C 0.49 24.35 7.34 87.66 0.64 24.99 16 8 O -0.63 -32.64 15.04 -3.07 -0.05 -32.68 16 9 N -0.44 -20.82 2.37 -609.38 -1.44 -22.26 16 10 C -0.35 -16.52 6.80 84.04 0.57 -15.95 16 11 H 0.10 4.34 7.29 -2.91 -0.02 4.32 16 12 C 0.03 1.29 3.35 84.93 0.28 1.57 16 13 N -0.87 -44.82 11.59 21.67 0.25 -44.57 16 14 Si 0.94 39.70 29.63 68.60 2.03 41.73 16 15 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 16 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 17 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 18 C 0.12 5.04 3.29 45.71 0.15 5.20 16 19 C -0.12 -4.64 6.42 31.70 0.20 -4.43 16 20 C -0.11 -3.24 6.91 31.92 0.22 -3.02 16 21 C -0.11 -3.08 6.83 31.67 0.22 -2.86 16 22 C -0.12 -4.14 6.26 31.32 0.20 -3.95 16 23 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 24 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.42 16.82 7.57 -92.71 -0.70 16.12 16 27 H 0.10 5.17 5.44 -2.39 -0.01 5.15 16 28 H 0.08 3.98 7.77 -2.39 -0.02 3.97 16 29 H 0.27 13.61 8.32 -92.71 -0.77 12.84 16 30 H 0.06 2.80 6.95 -2.38 -0.02 2.79 16 31 H 0.06 2.87 7.02 -2.38 -0.02 2.85 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 38 H 0.06 2.18 6.95 -2.39 -0.02 2.17 16 Total: -1.00 -61.63 313.60 2.80 -58.83 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: 0.37 Total: 34.20 kcal Atomic # 6 Polarization: 33.04 SS G_CDS: 5.19 Total: 38.23 kcal Atomic # 7 Polarization: -95.08 SS G_CDS: -4.48 Total: -99.56 kcal Atomic # 8 Polarization: -73.11 SS G_CDS: -0.32 Total: -73.43 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -61.63 2.80 -58.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125275779.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.728 kcal (2) G-P(sol) polarization free energy of solvation -61.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds