Wall clock time and date at job start Mon Mar 30 2020 01:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47110 * 193.85589 * 3 2 1 5 5 N 1.46900 * 109.47198 * 179.44910 * 4 3 2 6 6 C 1.46906 * 110.99664 * 297.82904 * 5 4 3 7 7 C 1.50697 * 109.47164 * 292.82545 * 6 5 4 8 8 H 1.08000 * 119.99761 * 354.96675 * 7 6 5 9 9 C 1.37871 * 120.00025 * 174.96409 * 7 6 5 10 10 N 1.31518 * 119.99983 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00105 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47128 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47077 * 120.00058 * 11 9 7 14 14 H 1.48503 * 109.47425 * 239.99915 * 11 9 7 15 15 C 1.46898 * 111.00432 * 61.78182 * 5 4 3 16 16 C 1.50705 * 109.47016 * 66.04600 * 15 5 4 17 17 C 1.32558 * 119.99658 * 125.00211 * 16 15 5 18 18 C 1.47816 * 119.99689 * 180.02562 * 17 16 15 19 19 C 1.39537 * 120.13889 * 180.02562 * 18 17 16 20 20 C 1.37980 * 119.85385 * 179.97438 * 19 18 17 21 21 C 1.38339 * 120.14084 * 359.97438 * 20 19 18 22 22 C 1.38343 * 120.29112 * 359.97438 * 21 20 19 23 23 C 1.37983 * 120.14025 * 359.97438 * 22 21 20 24 24 H 1.08996 * 109.47470 * 73.85184 * 3 2 1 25 25 H 1.09005 * 109.47032 * 313.85567 * 3 2 1 26 26 H 1.08994 * 109.47255 * 59.44588 * 4 3 2 27 27 H 1.09000 * 109.46804 * 299.44427 * 4 3 2 28 28 H 1.08994 * 109.47079 * 52.82977 * 6 5 4 29 29 H 1.09006 * 109.46893 * 172.82900 * 6 5 4 30 30 H 0.97005 * 120.00005 * 180.02562 * 10 9 7 31 31 H 1.09000 * 109.46892 * 306.04796 * 15 5 4 32 32 H 1.09002 * 109.47526 * 186.04890 * 15 5 4 33 33 H 1.07996 * 119.99697 * 304.99984 * 16 15 5 34 34 H 1.07997 * 120.00452 * 0.02562 * 17 16 15 35 35 H 1.07999 * 120.07670 * 359.97438 * 19 18 17 36 36 H 1.08002 * 119.92806 * 179.72515 * 20 19 18 37 37 H 1.08000 * 119.85548 * 179.97438 * 21 20 19 38 38 H 1.07992 * 119.93486 * 179.97438 * 22 21 20 39 39 H 1.07989 * 120.07239 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.4014 0.3455 5 7 4.5863 1.3989 0.3584 6 6 5.1021 0.4892 1.3902 7 6 4.7564 1.0289 2.7541 8 1 4.2807 1.9939 2.8482 9 6 5.0474 0.2908 3.8816 10 7 5.6262 -0.8846 3.7668 11 14 4.6183 0.9594 5.5722 12 1 3.9782 2.2918 5.4297 13 1 3.6797 0.0287 6.2490 14 1 5.8563 1.0897 6.3820 15 6 5.1239 1.0536 -0.9643 16 6 4.7759 2.1414 -1.9476 17 6 5.7335 2.7330 -2.6477 18 6 5.3923 3.8003 -3.6117 19 6 6.3978 4.4248 -4.3506 20 6 6.0726 5.4200 -5.2493 21 6 4.7529 5.7987 -5.4189 22 6 3.7511 5.1828 -4.6902 23 6 4.0629 4.1854 -3.7891 24 1 2.9715 -0.2850 -0.9871 25 1 2.9717 -0.7112 0.7411 26 1 2.7459 1.6910 1.3284 27 1 2.7619 2.1116 -0.4011 28 1 4.6521 -0.4954 1.2642 29 1 6.1850 0.4087 1.2951 30 1 5.8306 -1.4041 4.5601 31 1 4.6909 0.1104 -1.2976 32 1 6.2076 0.9537 -0.9014 33 1 3.7464 2.4387 -2.0819 34 1 6.7630 2.4354 -2.5138 35 1 7.4285 4.1298 -4.2195 36 1 6.8504 5.9072 -5.8186 37 1 4.5035 6.5785 -6.1232 38 1 2.7228 5.4832 -4.8268 39 1 3.2800 3.7052 -3.2211 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132840610.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:54 Heat of formation + Delta-G solvation = 53.180053 kcal Electronic energy + Delta-G solvation = -19145.152515 eV Core-core repulsion = 16245.326426 eV Total energy + Delta-G solvation = -2899.826089 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.06384 -39.35357 -37.40265 -35.43650 -34.49775 -31.97260 -31.77352 -30.96160 -28.65371 -26.37122 -25.35933 -23.74130 -22.92098 -21.40156 -19.96130 -18.85920 -18.20200 -17.93046 -16.83272 -16.42539 -16.08192 -15.93073 -15.56654 -15.14642 -15.13326 -14.67515 -14.29893 -14.17053 -13.82689 -13.73973 -13.59512 -13.36165 -13.13344 -12.95027 -12.72846 -12.57439 -12.46717 -12.22188 -11.95914 -11.81911 -11.70325 -11.44383 -11.18496 -10.94374 -10.52720 -9.78669 -9.05284 -8.75675 -8.12938 -6.19689 0.10490 0.57492 1.42581 1.46243 1.56387 1.69816 1.76602 1.80274 2.45347 3.01840 3.10740 3.21200 3.53916 3.88341 3.97764 4.17701 4.19586 4.24821 4.30281 4.36250 4.51092 4.57302 4.63478 4.70926 4.77980 4.86026 4.99289 5.15620 5.19619 5.23109 5.41154 5.44403 5.48881 5.61498 5.68232 5.75324 5.85484 6.01583 6.16030 6.18889 6.37226 6.59247 6.71330 6.97374 7.49454 8.96420 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.017791 B = 0.003922 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.434942 B = 7136.773178 C = 8021.420303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C 0.245 3.755 3 C -0.062 4.062 4 C 0.073 3.927 5 N -0.532 5.532 6 C 0.198 3.802 7 C -0.514 4.514 8 H 0.059 0.941 9 C 0.010 3.990 10 N -0.929 5.929 11 Si 0.950 3.050 12 H -0.267 1.267 13 H -0.284 1.284 14 H -0.282 1.282 15 C 0.073 3.927 16 C -0.120 4.120 17 C -0.130 4.130 18 C -0.064 4.064 19 C -0.126 4.126 20 C -0.126 4.126 21 C -0.133 4.133 22 C -0.128 4.128 23 C -0.133 4.133 24 H 0.133 0.867 25 H 0.105 0.895 26 H 0.066 0.934 27 H 0.090 0.910 28 H -0.001 1.001 29 H 0.006 0.994 30 H 0.262 0.738 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.134 0.866 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.563 8.861 -17.777 19.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.174 5.174 2 C -0.071 4.071 3 C -0.104 4.104 4 C -0.057 4.057 5 N -0.255 5.255 6 C 0.072 3.928 7 C -0.553 4.553 8 H 0.077 0.923 9 C -0.189 4.189 10 N -0.570 5.570 11 Si 0.777 3.223 12 H -0.191 1.191 13 H -0.210 1.210 14 H -0.208 1.208 15 C -0.054 4.054 16 C -0.138 4.138 17 C -0.149 4.149 18 C -0.064 4.064 19 C -0.144 4.144 20 C -0.144 4.144 21 C -0.151 4.151 22 C -0.146 4.146 23 C -0.151 4.151 24 H 0.150 0.850 25 H 0.123 0.877 26 H 0.085 0.915 27 H 0.108 0.892 28 H 0.016 0.984 29 H 0.024 0.976 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.152 0.848 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.155 0.845 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.887 9.199 -17.544 19.830 hybrid contribution 0.177 -0.880 1.164 1.470 sum -0.710 8.319 -16.380 18.386 Atomic orbital electron populations 1.81166 1.14220 1.10739 1.11232 1.29371 0.95222 0.91402 0.91137 1.20179 0.80519 1.03311 1.06363 1.22030 0.88050 0.93077 1.02531 1.62303 1.06091 1.53010 1.04047 1.19547 0.94105 0.90064 0.89085 1.21494 1.38440 1.03766 0.91614 0.92278 1.25655 0.95478 0.95177 1.02561 1.70041 1.43699 1.12964 1.30265 0.85616 0.77773 0.78592 0.80350 1.19148 1.20998 1.20847 1.21279 1.00250 0.95935 0.87953 1.23281 0.99522 0.96340 0.94634 1.21710 0.99542 0.96223 0.97406 1.19272 0.93794 0.96592 0.96721 1.21536 0.99423 0.96961 0.96482 1.21407 0.97290 0.97250 0.98417 1.21524 0.92986 1.00472 1.00078 1.21376 1.00529 0.96324 0.96357 1.21537 0.95989 0.98360 0.99234 0.84979 0.87665 0.91506 0.89202 0.98381 0.97639 0.92932 0.92169 0.91091 0.86191 0.86007 0.84825 0.83923 0.84031 0.84451 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -17.29 18.54 20.01 0.37 -16.92 16 2 C 0.25 7.47 15.43 89.44 1.38 8.85 16 3 C -0.06 -1.71 5.05 28.79 0.15 -1.56 16 4 C 0.07 2.27 4.94 86.30 0.43 2.70 16 5 N -0.53 -18.97 4.68 -905.36 -4.24 -23.21 16 6 C 0.20 9.00 4.53 85.55 0.39 9.39 16 7 C -0.51 -26.60 8.39 25.60 0.21 -26.38 16 8 H 0.06 3.07 7.38 -2.91 -0.02 3.05 16 9 C 0.01 0.51 5.46 84.65 0.46 0.98 16 10 N -0.93 -52.25 13.29 21.45 0.28 -51.96 16 11 Si 0.95 42.81 29.54 68.60 2.03 44.84 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 14 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 15 C 0.07 2.05 5.20 85.56 0.44 2.49 16 16 C -0.12 -2.90 8.61 24.54 0.21 -2.69 16 17 C -0.13 -3.06 9.52 23.66 0.23 -2.83 16 18 C -0.06 -1.45 5.87 -20.12 -0.12 -1.57 16 19 C -0.13 -2.52 9.79 22.52 0.22 -2.30 16 20 C -0.13 -2.15 10.03 22.23 0.22 -1.92 16 21 C -0.13 -2.20 10.04 22.32 0.22 -1.98 16 22 C -0.13 -2.36 10.03 22.23 0.22 -2.13 16 23 C -0.13 -2.87 9.40 22.52 0.21 -2.65 16 24 H 0.13 2.81 6.34 -2.39 -0.02 2.79 16 25 H 0.11 3.38 6.28 -2.38 -0.01 3.37 16 26 H 0.07 2.43 6.98 -2.39 -0.02 2.41 16 27 H 0.09 2.33 6.57 -2.39 -0.02 2.32 16 28 H 0.00 -0.07 6.01 -2.39 -0.01 -0.08 16 29 H 0.01 0.28 7.91 -2.38 -0.02 0.26 16 30 H 0.26 14.05 8.31 -92.70 -0.77 13.28 16 31 H 0.06 1.49 6.07 -2.39 -0.01 1.47 16 32 H 0.07 2.09 7.59 -2.39 -0.02 2.08 16 33 H 0.12 2.65 4.89 -2.91 -0.01 2.64 16 34 H 0.12 2.70 7.87 -2.91 -0.02 2.68 16 35 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 37 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 38 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 39 H 0.13 2.52 6.17 -2.92 -0.02 2.51 16 Total: -1.00 -61.95 330.26 4.37 -57.58 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 1.05 Total: 11.29 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: 4.88 Total: -21.61 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -3.59 Total: -92.09 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -61.95 4.37 -57.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132840610.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.759 kcal (2) G-P(sol) polarization free energy of solvation -61.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds