Wall clock time and date at job start Mon Mar 30 2020 01:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39640 * 120.15023 * 191.38093 * 3 2 1 5 5 C 1.37940 * 119.84792 * 179.97438 * 4 3 2 6 6 C 1.38361 * 120.15297 * 359.97006 * 5 4 3 7 7 C 1.50699 * 119.84726 * 180.02562 * 6 5 4 8 8 N 1.46904 * 109.46896 * 90.00306 * 7 6 5 9 9 C 1.46846 * 110.99942 * 170.00012 * 8 7 6 10 10 C 1.53035 * 109.52744 * 174.16069 * 9 8 7 11 11 C 1.53123 * 109.27774 * 59.17321 * 10 9 8 12 12 C 1.50695 * 109.57273 * 182.41108 * 11 10 9 13 13 H 1.08008 * 119.99627 * 119.71772 * 12 11 10 14 14 C 1.37874 * 120.00671 * 299.71759 * 12 11 10 15 15 N 1.31521 * 119.99341 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00368 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47271 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46720 * 120.00156 * 16 14 12 19 19 H 1.48499 * 109.47212 * 239.99689 * 16 14 12 20 20 C 1.53114 * 109.16198 * 302.35270 * 11 10 9 21 21 C 1.46844 * 111.00328 * 45.78858 * 8 7 6 22 22 C 1.38363 * 120.30591 * 0.28174 * 6 5 4 23 23 C 1.37955 * 120.14551 * 359.48584 * 22 6 5 24 24 H 1.08004 * 120.07246 * 359.95188 * 4 3 2 25 25 H 1.08006 * 119.92136 * 179.97438 * 5 4 3 26 26 H 1.09003 * 109.47597 * 330.00181 * 7 6 5 27 27 H 1.09003 * 109.47331 * 209.99596 * 7 6 5 28 28 H 1.09008 * 109.46456 * 294.17536 * 9 8 7 29 29 H 1.09003 * 109.46474 * 54.14041 * 9 8 7 30 30 H 1.08995 * 109.50534 * 179.12351 * 10 9 8 31 31 H 1.09011 * 109.49854 * 299.24031 * 10 9 8 32 32 H 1.08998 * 109.51778 * 62.25946 * 11 10 9 33 33 H 0.97007 * 119.99481 * 179.97438 * 15 14 12 34 34 H 1.09000 * 109.50493 * 297.71120 * 20 11 10 35 35 H 1.09000 * 109.53426 * 177.61523 * 20 11 10 36 36 H 1.09000 * 109.46271 * 305.85568 * 21 8 7 37 37 H 1.09008 * 109.46154 * 65.83367 * 21 8 7 38 38 H 1.07997 * 119.92893 * 179.72233 * 22 6 5 39 39 H 1.08004 * 120.06834 * 180.25560 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 1.1847 0.2383 5 6 4.6482 1.1781 0.2374 6 6 5.3374 0.0017 0.0017 7 6 6.8444 0.0022 0.0029 8 7 7.3331 -0.2703 1.3612 9 6 8.7815 -0.5122 1.3607 10 6 9.2780 -0.6475 2.8019 11 6 8.5477 -1.8093 3.4813 12 6 8.9884 -1.9112 4.9187 13 1 8.2653 -1.8058 5.7140 14 6 10.3147 -2.1389 5.2188 15 7 11.1954 -2.2666 4.2503 16 14 10.8611 -2.2644 7.0006 17 1 9.6870 -2.0857 7.8922 18 1 11.4652 -3.5997 7.2401 19 1 11.8654 -1.2084 7.2860 20 6 7.0387 -1.5559 3.4253 21 6 6.6072 -1.3943 1.9661 22 6 4.6494 -1.1741 -0.2403 23 6 3.2699 -1.1827 -0.2375 24 1 2.7320 2.1036 0.4225 25 1 5.1915 2.0933 0.4211 26 1 7.2078 0.9761 -0.3255 27 1 7.2086 -0.7691 -0.6758 28 1 8.9960 -1.4311 0.8149 29 1 9.2891 0.3232 0.8785 30 1 10.3504 -0.8426 2.8006 31 1 9.0762 0.2762 3.3445 32 1 8.7804 -2.7391 2.9622 33 1 12.1286 -2.4265 4.4614 34 1 6.8017 -0.6466 3.9777 35 1 6.5107 -2.3996 3.8697 36 1 5.5356 -1.1995 1.9236 37 1 6.8320 -2.3091 1.4176 38 1 5.1935 -2.0879 -0.4279 39 1 2.7342 -2.1021 -0.4225 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260430548.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:58 Heat of formation + Delta-G solvation = 48.060411 kcal Electronic energy + Delta-G solvation = -19809.093884 eV Core-core repulsion = 16909.045790 eV Total energy + Delta-G solvation = -2900.048094 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.99292 -38.08846 -36.58125 -34.26626 -32.23254 -31.31355 -30.76492 -29.60447 -27.00725 -24.82149 -23.12576 -22.60480 -21.82241 -20.92383 -19.10856 -18.57876 -16.43142 -15.87757 -15.79530 -15.27889 -14.68608 -14.51314 -14.13555 -14.11154 -13.81950 -13.57617 -13.09932 -13.01364 -12.80257 -12.62531 -12.35631 -12.10898 -11.82977 -11.37674 -11.35630 -11.17643 -10.96643 -10.75821 -10.42855 -10.22523 -10.00056 -9.45873 -9.23014 -9.01294 -8.83978 -8.71440 -8.30225 -7.80152 -5.98074 -4.02936 0.57153 1.16783 2.47206 2.75425 3.30088 3.38439 3.42694 3.65645 3.70719 4.44414 4.48166 4.63303 4.67296 4.69629 5.15876 5.18704 5.32479 5.48869 5.49401 5.67265 5.75660 5.78586 5.88782 5.99469 6.08556 6.09732 6.17231 6.31016 6.42851 6.56739 6.61401 6.62807 6.84859 7.06407 7.13036 7.28452 7.40198 7.57572 7.62733 7.81086 8.03963 8.14598 8.48222 9.01062 9.61672 11.08171 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.032543 B = 0.003721 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.187072 B = 7523.321284 C = 7982.588416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C 0.260 3.740 3 C -0.041 4.041 4 C -0.069 4.069 5 C -0.102 4.102 6 C -0.039 4.039 7 C 0.083 3.917 8 N -0.528 5.528 9 C 0.057 3.943 10 C -0.104 4.104 11 C 0.048 3.952 12 C -0.509 4.509 13 H 0.055 0.945 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.889 3.111 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.106 4.106 21 C 0.055 3.945 22 C -0.115 4.115 23 C -0.070 4.070 24 H 0.131 0.869 25 H 0.136 0.864 26 H 0.083 0.917 27 H 0.042 0.958 28 H 0.024 0.976 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.044 0.956 32 H 0.020 0.980 33 H 0.258 0.742 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.023 0.977 38 H 0.131 0.869 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.753 4.905 -11.166 15.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.103 5.103 2 C -0.055 4.055 3 C -0.044 4.044 4 C -0.090 4.090 5 C -0.121 4.121 6 C -0.040 4.040 7 C -0.045 4.045 8 N -0.253 5.253 9 C -0.070 4.070 10 C -0.142 4.142 11 C 0.029 3.971 12 C -0.547 4.547 13 H 0.073 0.927 14 C -0.141 4.141 15 N -0.532 5.532 16 Si 0.717 3.283 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.144 4.144 21 C -0.073 4.073 22 C -0.133 4.133 23 C -0.090 4.090 24 H 0.149 0.851 25 H 0.154 0.846 26 H 0.101 0.899 27 H 0.060 0.940 28 H 0.042 0.958 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.041 0.959 38 H 0.149 0.851 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.398 5.282 -10.898 16.631 hybrid contribution 0.997 -0.845 0.485 1.394 sum -10.401 4.437 -10.413 15.372 Atomic orbital electron populations 1.81244 1.12163 1.07579 1.09316 1.25789 0.92731 0.93570 0.93405 1.15980 0.84097 0.95708 1.08647 1.21162 0.94329 0.96547 0.96960 1.21006 0.93128 0.98638 0.99280 1.20165 0.96190 0.93097 0.94541 1.21221 0.89523 1.01865 0.91873 1.62215 1.05365 1.41635 1.16082 1.22310 0.85672 0.98140 1.00852 1.21670 1.02987 0.99277 0.90310 1.18686 0.88659 0.93966 0.95787 1.21255 0.93204 1.48169 0.92086 0.92718 1.24968 0.96872 0.95267 0.96948 1.69886 1.02319 1.49960 1.31032 0.86587 0.78641 0.77524 0.85544 1.19825 1.21171 1.21083 1.21676 0.99785 1.00294 0.92679 1.22275 0.97206 0.90627 0.97181 1.21084 0.93511 0.98315 1.00421 1.21107 0.94147 0.96549 0.97245 0.85104 0.84597 0.89877 0.94030 0.95769 0.92482 0.88876 0.93750 0.96197 0.93180 0.92522 0.93264 0.91768 0.95864 0.85067 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.68 18.54 41.84 0.78 -4.90 16 2 C 0.26 2.89 15.33 -22.47 -0.34 2.55 16 3 C -0.04 -0.39 5.73 -106.93 -0.61 -1.00 16 4 C -0.07 -0.61 9.76 -39.17 -0.38 -0.99 16 5 C -0.10 -0.96 9.68 -39.65 -0.38 -1.35 16 6 C -0.04 -0.41 4.12 -104.53 -0.43 -0.84 16 7 C 0.08 0.99 5.42 -4.97 -0.03 0.97 16 8 N -0.53 -8.41 4.80 -236.11 -1.13 -9.54 16 9 C 0.06 1.03 5.42 -3.84 -0.02 1.01 16 10 C -0.10 -2.35 5.12 -26.65 -0.14 -2.49 16 11 C 0.05 1.14 2.16 -91.65 -0.20 0.95 16 12 C -0.51 -13.73 8.56 -34.44 -0.29 -14.02 16 13 H 0.05 1.47 7.75 -52.48 -0.41 1.07 16 14 C 0.06 1.63 5.31 -17.82 -0.09 1.54 16 15 N -0.89 -24.93 11.37 55.43 0.63 -24.30 16 16 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C -0.11 -2.16 5.32 -26.66 -0.14 -2.30 16 21 C 0.05 0.91 4.58 -3.84 -0.02 0.89 16 22 C -0.11 -1.12 7.79 -39.64 -0.31 -1.42 16 23 C -0.07 -0.63 9.76 -39.17 -0.38 -1.01 16 24 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 25 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 26 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 27 H 0.04 0.49 8.02 -51.93 -0.42 0.07 16 28 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 29 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 30 H 0.09 2.35 6.17 -51.93 -0.32 2.03 16 31 H 0.04 1.03 8.14 -51.92 -0.42 0.61 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.96 5.65 -51.93 -0.29 0.67 16 37 H 0.02 0.39 8.14 -51.92 -0.42 -0.04 16 38 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 LS Contribution 322.82 15.07 4.86 4.86 Total: -1.00 -28.86 322.82 -9.30 -38.16 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -5.64 Total: -2.77 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -3.78 Total: -17.53 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.27 Total: -38.74 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.86 -9.30 -38.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260430548.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.224 kcal (2) G-P(sol) polarization free energy of solvation -28.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds