Wall clock time and date at job start Mon Mar 30 2020 01:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39640 * 120.15023 * 191.38093 * 3 2 1 5 5 C 1.37940 * 119.84792 * 179.97438 * 4 3 2 6 6 C 1.38361 * 120.15297 * 359.97006 * 5 4 3 7 7 C 1.50699 * 119.84726 * 180.02562 * 6 5 4 8 8 N 1.46904 * 109.46896 * 90.00306 * 7 6 5 9 9 C 1.46846 * 110.99942 * 170.00012 * 8 7 6 10 10 C 1.53035 * 109.52744 * 174.16069 * 9 8 7 11 11 C 1.53123 * 109.27774 * 59.17321 * 10 9 8 12 12 C 1.50695 * 109.57273 * 182.41108 * 11 10 9 13 13 H 1.08008 * 119.99627 * 119.71772 * 12 11 10 14 14 C 1.37874 * 120.00671 * 299.71759 * 12 11 10 15 15 N 1.31521 * 119.99341 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00368 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47271 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46720 * 120.00156 * 16 14 12 19 19 H 1.48499 * 109.47212 * 239.99689 * 16 14 12 20 20 C 1.53114 * 109.16198 * 302.35270 * 11 10 9 21 21 C 1.46844 * 111.00328 * 45.78858 * 8 7 6 22 22 C 1.38363 * 120.30591 * 0.28174 * 6 5 4 23 23 C 1.37955 * 120.14551 * 359.48584 * 22 6 5 24 24 H 1.08004 * 120.07246 * 359.95188 * 4 3 2 25 25 H 1.08006 * 119.92136 * 179.97438 * 5 4 3 26 26 H 1.09003 * 109.47597 * 330.00181 * 7 6 5 27 27 H 1.09003 * 109.47331 * 209.99596 * 7 6 5 28 28 H 1.09008 * 109.46456 * 294.17536 * 9 8 7 29 29 H 1.09003 * 109.46474 * 54.14041 * 9 8 7 30 30 H 1.08995 * 109.50534 * 179.12351 * 10 9 8 31 31 H 1.09011 * 109.49854 * 299.24031 * 10 9 8 32 32 H 1.08998 * 109.51778 * 62.25946 * 11 10 9 33 33 H 0.97007 * 119.99481 * 179.97438 * 15 14 12 34 34 H 1.09000 * 109.50493 * 297.71120 * 20 11 10 35 35 H 1.09000 * 109.53426 * 177.61523 * 20 11 10 36 36 H 1.09000 * 109.46271 * 305.85568 * 21 8 7 37 37 H 1.09008 * 109.46154 * 65.83367 * 21 8 7 38 38 H 1.07997 * 119.92893 * 179.72233 * 22 6 5 39 39 H 1.08004 * 120.06834 * 180.25560 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 1.1847 0.2383 5 6 4.6482 1.1781 0.2374 6 6 5.3374 0.0017 0.0017 7 6 6.8444 0.0022 0.0029 8 7 7.3331 -0.2703 1.3612 9 6 8.7815 -0.5122 1.3607 10 6 9.2780 -0.6475 2.8019 11 6 8.5477 -1.8093 3.4813 12 6 8.9884 -1.9112 4.9187 13 1 8.2653 -1.8058 5.7140 14 6 10.3147 -2.1389 5.2188 15 7 11.1954 -2.2666 4.2503 16 14 10.8611 -2.2644 7.0006 17 1 9.6870 -2.0857 7.8922 18 1 11.4652 -3.5997 7.2401 19 1 11.8654 -1.2084 7.2860 20 6 7.0387 -1.5559 3.4253 21 6 6.6072 -1.3943 1.9661 22 6 4.6494 -1.1741 -0.2403 23 6 3.2699 -1.1827 -0.2375 24 1 2.7320 2.1036 0.4225 25 1 5.1915 2.0933 0.4211 26 1 7.2078 0.9761 -0.3255 27 1 7.2086 -0.7691 -0.6758 28 1 8.9960 -1.4311 0.8149 29 1 9.2891 0.3232 0.8785 30 1 10.3504 -0.8426 2.8006 31 1 9.0762 0.2762 3.3445 32 1 8.7804 -2.7391 2.9622 33 1 12.1286 -2.4265 4.4614 34 1 6.8017 -0.6466 3.9777 35 1 6.5107 -2.3996 3.8697 36 1 5.5356 -1.1995 1.9236 37 1 6.8320 -2.3091 1.4176 38 1 5.1935 -2.0879 -0.4279 39 1 2.7342 -2.1021 -0.4225 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260430548.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:58 Heat of formation + Delta-G solvation = 32.793896 kcal Electronic energy + Delta-G solvation = -19809.755889 eV Core-core repulsion = 16909.045790 eV Total energy + Delta-G solvation = -2900.710099 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.86391 -39.37691 -37.55659 -35.82877 -33.75851 -32.17959 -31.99816 -31.10646 -28.40688 -26.35424 -24.21414 -23.55883 -23.35501 -22.16037 -20.26542 -19.83884 -18.41816 -17.00181 -16.60951 -16.49708 -16.33419 -15.44206 -15.37999 -15.04282 -14.93527 -14.74334 -14.38143 -14.30773 -14.12094 -13.92373 -13.63491 -13.20897 -13.07922 -12.91054 -12.81983 -12.50747 -12.32031 -12.17572 -11.93322 -11.84843 -11.76039 -11.30830 -10.75175 -10.60679 -10.34251 -9.87353 -9.74279 -9.05580 -8.05472 -6.17918 -0.20205 0.47909 1.41056 1.43673 1.54424 1.61149 1.92163 2.45965 2.84858 2.89654 3.21419 3.31315 3.80889 3.93673 4.03435 4.29254 4.33904 4.41452 4.46287 4.51144 4.60238 4.76739 4.78894 4.84599 4.92015 4.98795 5.03304 5.13935 5.17986 5.28026 5.29849 5.39132 5.41223 5.61862 5.67319 5.68350 5.90939 6.05983 6.09040 6.35107 6.38680 6.44131 6.45753 6.94123 7.49708 8.98950 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.032543 B = 0.003721 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.187072 B = 7523.321284 C = 7982.588416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.282 3.718 3 C -0.047 4.047 4 C -0.064 4.064 5 C -0.103 4.103 6 C -0.050 4.050 7 C 0.085 3.915 8 N -0.534 5.534 9 C 0.069 3.931 10 C -0.096 4.096 11 C 0.044 3.956 12 C -0.532 4.532 13 H 0.048 0.952 14 C 0.013 3.987 15 N -0.916 5.916 16 Si 0.950 3.050 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.280 1.280 20 C -0.101 4.101 21 C 0.066 3.934 22 C -0.119 4.119 23 C -0.066 4.066 24 H 0.150 0.850 25 H 0.149 0.851 26 H 0.100 0.900 27 H 0.049 0.951 28 H 0.018 0.982 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.030 0.970 32 H -0.012 1.012 33 H 0.259 0.741 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.023 0.977 38 H 0.138 0.862 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.565 5.657 -11.786 16.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.032 4.032 3 C -0.050 4.050 4 C -0.084 4.084 5 C -0.121 4.121 6 C -0.051 4.051 7 C -0.042 4.042 8 N -0.259 5.259 9 C -0.058 4.058 10 C -0.134 4.134 11 C 0.026 3.974 12 C -0.570 4.570 13 H 0.066 0.934 14 C -0.185 4.185 15 N -0.556 5.556 16 Si 0.776 3.224 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.206 1.206 20 C -0.139 4.139 21 C -0.062 4.062 22 C -0.138 4.138 23 C -0.086 4.086 24 H 0.167 0.833 25 H 0.167 0.833 26 H 0.118 0.882 27 H 0.067 0.933 28 H 0.037 0.963 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.007 0.993 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.042 0.958 38 H 0.156 0.844 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.222 6.038 -11.528 17.854 hybrid contribution 1.252 -1.076 0.664 1.780 sum -10.970 4.962 -10.864 16.217 Atomic orbital electron populations 1.81271 1.13412 1.08961 1.10946 1.25953 0.92814 0.92308 0.92141 1.16074 0.83205 0.96421 1.09324 1.21357 0.94211 0.96986 0.95848 1.21162 0.93359 0.98795 0.98804 1.20129 0.95318 0.93921 0.95728 1.21272 0.90610 1.02924 0.89379 1.62109 1.03830 1.40941 1.19029 1.22050 0.87515 0.98830 0.97453 1.21419 1.01006 0.97730 0.93292 1.18659 0.91549 0.93094 0.94129 1.21634 0.93473 1.48339 0.93542 0.93399 1.25697 0.97023 0.95069 1.00746 1.70015 1.02482 1.50396 1.32721 0.85635 0.78204 0.77542 0.81044 1.19396 1.20785 1.20603 1.21551 0.97000 0.99756 0.95605 1.22127 0.98414 0.91149 0.94494 1.21186 0.93774 0.98401 1.00437 1.21267 0.93985 0.97017 0.96342 0.83271 0.83349 0.88201 0.93331 0.96346 0.90328 0.92114 0.95083 0.99343 0.93141 0.93327 0.93373 0.89447 0.95842 0.84417 0.83572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.96 18.54 19.00 0.35 -11.61 16 2 C 0.28 5.75 15.33 88.33 1.35 7.11 16 3 C -0.05 -0.77 5.73 -21.36 -0.12 -0.89 16 4 C -0.06 -0.93 9.76 22.54 0.22 -0.71 16 5 C -0.10 -1.61 9.68 22.23 0.22 -1.39 16 6 C -0.05 -0.90 4.12 -19.81 -0.08 -0.98 16 7 C 0.08 1.78 5.42 85.56 0.46 2.25 16 8 N -0.53 -15.94 4.80 -900.91 -4.32 -20.26 16 9 C 0.07 2.43 5.42 86.33 0.47 2.89 16 10 C -0.10 -4.41 5.12 30.65 0.16 -4.25 16 11 C 0.04 2.18 2.16 -11.46 -0.02 2.15 16 12 C -0.53 -29.33 8.56 25.60 0.22 -29.11 16 13 H 0.05 2.63 7.75 -2.91 -0.02 2.61 16 14 C 0.01 0.72 5.31 84.65 0.45 1.17 16 15 N -0.92 -52.33 11.37 21.45 0.24 -52.09 16 16 Si 0.95 43.58 29.54 68.60 2.03 45.61 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 C -0.10 -4.09 5.32 30.64 0.16 -3.93 16 21 C 0.07 2.07 4.58 86.32 0.40 2.47 16 22 C -0.12 -1.97 7.79 22.23 0.17 -1.80 16 23 C -0.07 -1.00 9.76 22.54 0.22 -0.78 16 24 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 25 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 26 H 0.10 1.80 8.08 -2.39 -0.02 1.78 16 27 H 0.05 0.99 8.02 -2.39 -0.02 0.97 16 28 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.08 2.42 8.12 -2.39 -0.02 2.40 16 30 H 0.06 3.17 6.17 -2.39 -0.01 3.15 16 31 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 32 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 33 H 0.26 14.09 8.31 -92.70 -0.77 13.31 16 34 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.09 2.38 5.65 -2.39 -0.01 2.37 16 37 H 0.02 0.74 8.14 -2.38 -0.02 0.73 16 38 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 39 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -63.10 322.82 3.60 -59.51 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: 1.03 Total: 4.65 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 4.27 Total: -25.80 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -3.73 Total: -83.96 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -63.10 3.60 -59.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260430548.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.299 kcal (2) G-P(sol) polarization free energy of solvation -63.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds