Wall clock time and date at job start Mon Mar 30 2020 01:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99971 * 2 1 4 4 C 1.52993 * 109.47290 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.47161 * 65.00324 * 4 3 2 6 6 C 1.46227 * 124.85038 * 270.33177 * 5 4 3 7 7 N 1.46801 * 108.04977 * 180.16722 * 6 5 4 8 8 C 1.34777 * 127.02566 * 179.83735 * 7 6 5 9 9 O 1.21283 * 120.00463 * 359.71832 * 8 7 6 10 10 C 1.50700 * 119.99675 * 179.43954 * 8 7 6 11 11 C 1.53004 * 109.47208 * 180.27843 * 10 8 7 12 12 C 1.50700 * 109.47208 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99770 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99720 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00078 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99915 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46986 * 89.99876 * 16 14 12 18 18 H 1.48492 * 109.47096 * 210.00138 * 16 14 12 19 19 H 1.48506 * 109.46749 * 330.00135 * 16 14 12 20 20 C 1.46985 * 105.94012 * 359.58373 * 7 6 5 21 21 C 1.34295 * 124.85435 * 90.02354 * 5 4 3 22 22 O 1.21283 * 125.42891 * 0.02562 * 21 5 4 23 23 H 1.09007 * 109.46833 * 59.99845 * 1 2 3 24 24 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47198 * 299.99959 * 1 2 3 26 26 H 1.09004 * 109.46900 * 59.99508 * 3 2 1 27 27 H 1.08997 * 109.47312 * 300.00052 * 3 2 1 28 28 H 1.09002 * 109.47489 * 305.00517 * 4 3 2 29 29 H 1.09001 * 109.47731 * 184.99834 * 4 3 2 30 30 H 1.08999 * 109.88662 * 60.44339 * 6 5 4 31 31 H 1.08999 * 109.62413 * 299.74883 * 6 5 4 32 32 H 1.09009 * 109.47352 * 300.27556 * 10 8 7 33 33 H 1.08998 * 109.47585 * 60.27844 * 10 8 7 34 34 H 1.09000 * 109.46887 * 300.00372 * 11 10 8 35 35 H 1.08998 * 109.46846 * 59.99549 * 11 10 8 36 36 H 0.97008 * 119.99515 * 180.02562 * 15 14 12 37 37 H 1.08998 * 110.03761 * 119.53449 * 20 7 6 38 38 H 1.09000 * 110.03179 * 240.98026 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5641 -1.2510 6 6 4.1357 -0.8744 -1.4597 7 7 4.5957 -1.0860 -2.8376 8 6 4.8660 -2.2656 -3.4309 9 8 4.7394 -3.2998 -2.8101 10 6 5.3197 -2.2999 -4.8676 11 6 5.5501 -3.7508 -5.2952 12 6 6.0044 -3.7851 -6.7317 13 1 6.1171 -2.8641 -7.2845 14 6 6.2761 -4.9921 -7.3401 15 7 6.1383 -6.1135 -6.6670 16 14 6.8386 -5.0347 -9.1209 17 1 8.3206 -4.9570 -9.1739 18 1 6.3862 -6.3001 -9.7527 19 1 6.2559 -3.8806 -9.8517 20 6 4.6950 0.2511 -3.4398 21 6 4.2873 1.2346 -2.3723 22 8 4.2468 2.4395 -2.5051 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.8508 0.5685 0.8426 29 1 3.9785 2.1766 0.0902 30 1 3.1814 -1.3788 -1.3084 31 1 4.8743 -1.2663 -0.7604 32 1 4.5544 -1.8516 -5.5012 33 1 6.2491 -1.7395 -4.9686 34 1 6.3154 -4.1992 -4.6616 35 1 4.6207 -4.3112 -5.1941 36 1 6.3299 -6.9627 -7.0951 37 1 5.7209 0.4442 -3.7534 38 1 4.0223 0.3268 -4.2941 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291527104.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:21 Heat of formation + Delta-G solvation = -101.395651 kcal Electronic energy + Delta-G solvation = -20661.787266 eV Core-core repulsion = 17312.116257 eV Total energy + Delta-G solvation = -3349.671009 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.00679 -38.86359 -38.13992 -36.59886 -34.38652 -33.50904 -31.19641 -30.27604 -28.51886 -26.97276 -26.14409 -24.59246 -23.30227 -21.56792 -20.07900 -19.24837 -17.42631 -17.02023 -16.85502 -16.49936 -15.95707 -15.64980 -15.49517 -15.18699 -15.02300 -14.61052 -14.41229 -13.68604 -13.60155 -13.16401 -12.87622 -12.60185 -12.43202 -12.27024 -12.18999 -12.14467 -11.54912 -11.19914 -10.94465 -10.61857 -10.31829 -10.02151 -10.00773 -9.72664 -9.38598 -9.33510 -9.10870 -8.53012 -8.33946 -5.98140 -4.02744 2.22853 2.39751 2.99817 3.03076 3.33048 3.39407 3.41710 3.42069 4.07651 4.45361 4.58798 4.64849 4.80352 4.92572 5.03405 5.05667 5.12344 5.20399 5.26250 5.29836 5.37163 5.39417 5.41213 5.50023 5.89520 6.05339 6.14576 6.19691 6.71933 6.79496 6.83472 7.57157 7.71328 7.78876 7.80883 8.03365 8.32848 8.52907 9.05052 9.61118 11.12750 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.030215 B = 0.003568 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.473937 B = 7845.646520 C = 8313.882073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.387 6.387 3 C 0.041 3.959 4 C 0.136 3.864 5 N -0.619 5.619 6 C 0.335 3.665 7 N -0.639 5.639 8 C 0.541 3.459 9 O -0.518 6.518 10 C -0.123 4.123 11 C 0.036 3.964 12 C -0.528 4.528 13 H 0.057 0.943 14 C 0.059 3.941 15 N -0.889 5.889 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.073 3.927 21 C 0.520 3.480 22 O -0.523 6.523 23 H 0.040 0.960 24 H 0.088 0.912 25 H 0.040 0.960 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.261 0.739 37 H 0.110 0.890 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.079 16.080 13.987 22.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C -0.037 4.037 4 C 0.015 3.985 5 N -0.355 5.355 6 C 0.127 3.873 7 N -0.380 5.380 8 C 0.333 3.667 9 O -0.392 6.392 10 C -0.163 4.163 11 C -0.002 4.002 12 C -0.566 4.566 13 H 0.075 0.925 14 C -0.143 4.143 15 N -0.528 5.528 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.054 4.054 21 C 0.307 3.693 22 O -0.398 6.398 23 H 0.059 0.941 24 H 0.106 0.894 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.043 0.957 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.128 0.872 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.040 15.685 14.268 22.677 hybrid contribution -0.001 0.207 -0.895 0.919 sum -8.040 15.892 13.373 22.272 Atomic orbital electron populations 1.22746 0.80739 1.03035 0.99847 1.87910 1.19987 1.27292 1.95414 1.23055 0.94038 0.85538 1.01090 1.21445 0.92327 0.99777 0.84983 1.48321 1.66604 1.07740 1.12785 1.21265 1.00928 0.79838 0.85245 1.48624 1.70372 1.06353 1.12607 1.21389 0.75419 0.79809 0.90120 1.90719 1.51174 1.31236 1.66022 1.21917 1.01378 1.04915 0.88049 1.18944 0.98290 0.87167 0.95758 1.21190 1.45906 0.92640 0.96879 0.92505 1.25018 0.95581 0.95709 0.98026 1.69997 1.48549 0.97571 1.36653 0.86580 0.78906 0.77459 0.84942 1.20659 1.21230 1.19846 1.21851 1.04886 0.82051 0.96568 1.20669 0.76269 0.88468 0.83900 1.90764 1.54177 1.12940 1.81965 0.94094 0.89389 0.94104 0.91899 0.92679 0.88820 0.87832 0.89568 0.90645 0.89845 0.89833 0.95655 0.95656 0.92908 0.87212 0.87296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -3.86 10.00 -35.23 -0.35 -4.21 16 3 C 0.04 0.33 6.28 37.15 0.23 0.56 16 4 C 0.14 1.11 6.37 -4.04 -0.03 1.08 16 5 N -0.62 -6.84 2.88 -177.57 -0.51 -7.36 16 6 C 0.34 4.23 7.48 -63.72 -0.48 3.76 16 7 N -0.64 -9.28 3.36 -178.24 -0.60 -9.87 16 8 C 0.54 10.14 7.88 -10.98 -0.09 10.06 16 9 O -0.52 -11.80 16.38 5.55 0.09 -11.71 16 10 C -0.12 -2.40 4.92 -27.88 -0.14 -2.54 16 11 C 0.04 0.94 4.26 -27.88 -0.12 0.82 16 12 C -0.53 -14.67 9.11 -34.44 -0.31 -14.98 16 13 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -27.03 13.29 55.43 0.74 -26.30 16 16 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 C 0.07 0.87 6.67 -4.90 -0.03 0.84 16 21 C 0.52 6.51 8.13 -11.17 -0.09 6.42 16 22 O -0.52 -7.80 17.67 5.55 0.10 -7.70 16 23 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 24 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.10 0.75 7.98 -51.93 -0.41 0.34 16 30 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 1.49 8.14 -51.92 -0.42 1.06 16 33 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 37 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 329.38 15.07 4.96 4.96 Total: -1.00 -34.84 329.38 -6.47 -41.31 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -5.84 Total: -4.49 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -0.03 Total: 8.95 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -0.37 Total: -43.53 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.16 Total: -23.61 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.84 -6.47 -41.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291527104.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.083 kcal (2) G-P(sol) polarization free energy of solvation -34.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds