Wall clock time and date at job start Mon Mar 30 2020 01:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00047 * 2 1 4 4 C 1.52998 * 109.47217 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47384 * 65.00199 * 4 3 2 6 6 C 1.46758 * 124.34883 * 270.00290 * 5 4 3 7 7 C 1.54477 * 105.47416 * 162.95658 * 6 5 4 8 8 H 1.08998 * 111.00551 * 267.28182 * 7 6 5 9 9 C 1.50703 * 110.96999 * 143.53379 * 7 6 5 10 10 O 1.21283 * 120.00011 * 6.16499 * 9 7 6 11 11 N 1.34775 * 120.00072 * 186.17053 * 9 7 6 12 12 C 1.46506 * 119.99880 * 179.97438 * 11 9 7 13 13 C 1.50700 * 109.46957 * 179.97438 * 12 11 9 14 14 H 1.08002 * 119.99770 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00083 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00147 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00278 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47228 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.46793 * 300.00001 * 17 15 13 20 20 H 1.48500 * 109.47000 * 60.00094 * 17 15 13 21 21 C 1.54629 * 101.76461 * 25.41646 * 7 6 5 22 22 C 1.34419 * 124.35050 * 89.96726 * 5 4 3 23 23 O 1.21281 * 124.94022 * 0.40536 * 22 5 4 24 24 H 1.08999 * 109.47286 * 300.00215 * 1 2 3 25 25 H 1.09003 * 109.47019 * 60.00220 * 1 2 3 26 26 H 1.08999 * 109.46870 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47102 * 59.99969 * 3 2 1 28 28 H 1.08998 * 109.47028 * 299.99790 * 3 2 1 29 29 H 1.08997 * 109.47509 * 304.99846 * 4 3 2 30 30 H 1.09004 * 109.47053 * 184.99910 * 4 3 2 31 31 H 1.09007 * 110.24989 * 43.95448 * 6 5 4 32 32 H 1.09004 * 110.24431 * 281.96092 * 6 5 4 33 33 H 0.97002 * 120.00040 * 359.97438 * 11 9 7 34 34 H 1.08994 * 109.47197 * 60.00159 * 12 11 9 35 35 H 1.08998 * 109.47414 * 299.99840 * 12 11 9 36 36 H 0.97005 * 119.99661 * 359.97438 * 16 15 13 37 37 H 1.09000 * 110.48861 * 93.87671 * 21 7 6 38 38 H 1.08997 * 110.48601 * 216.38877 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1392 -0.8814 -1.4461 7 6 4.1815 -1.0885 -2.9763 8 1 3.1873 -1.3002 -3.3696 9 6 5.1490 -2.1833 -3.3459 10 8 5.6815 -2.8407 -2.4769 11 7 5.4224 -2.4318 -4.6420 12 6 6.3633 -3.4958 -5.0012 13 6 6.4915 -3.5677 -6.5010 14 1 5.9287 -2.8886 -7.1242 15 6 7.3272 -4.5006 -7.0775 16 7 8.0121 -5.3279 -6.3186 17 14 7.4866 -4.5894 -8.9366 18 1 8.4402 -5.6679 -9.3007 19 1 6.1584 -4.8798 -9.5339 20 1 7.9884 -3.2906 -9.4529 21 6 4.6892 0.2873 -3.4667 22 6 4.2842 1.2452 -2.3681 23 8 4.2424 2.4522 -2.4794 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8508 0.5686 0.8427 30 1 3.9784 2.1766 0.0902 31 1 3.2931 -1.4176 -1.0162 32 1 5.0709 -1.2208 -0.9935 33 1 4.9962 -1.9062 -5.3370 34 1 5.9956 -4.4492 -4.6222 35 1 7.3381 -3.2821 -4.5627 36 1 7.9296 -5.2816 -5.3532 37 1 5.7731 0.2752 -3.5818 38 1 4.2097 0.5578 -4.4074 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330741998.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:11 Heat of formation + Delta-G solvation = -125.587994 kcal Electronic energy + Delta-G solvation = -20734.619261 eV Core-core repulsion = 17383.899193 eV Total energy + Delta-G solvation = -3350.720068 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.76368 -38.84969 -38.06530 -36.19393 -34.52132 -33.51397 -32.40645 -29.58165 -27.71288 -26.97838 -26.43042 -23.80557 -23.03225 -22.10080 -19.70678 -19.49097 -17.73576 -17.27524 -16.77264 -16.66242 -15.94534 -15.59144 -15.39875 -15.05275 -14.63663 -14.38919 -13.84736 -13.77993 -13.39747 -13.23369 -12.91213 -12.59620 -12.33617 -12.31536 -12.18731 -11.94812 -11.58659 -11.36682 -11.25786 -11.06340 -10.80493 -10.18376 -10.10879 -9.90403 -9.31579 -8.83615 -8.80464 -8.73630 -8.10063 -6.55303 -4.29566 2.48678 2.83039 3.07917 3.36273 3.37839 3.46444 3.56811 3.79569 4.29353 4.39636 4.44728 4.72155 4.78858 4.91901 4.93488 4.98587 5.05772 5.09154 5.23731 5.24333 5.38124 5.41319 5.46178 5.58199 5.61574 5.79282 5.96180 6.38903 6.78105 6.91668 7.01219 7.15285 7.18925 7.58571 8.06748 8.20995 8.36085 8.66041 8.82393 9.44026 10.84873 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.031675 B = 0.003557 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.756748 B = 7870.156603 C = 8129.980310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.043 3.957 4 C 0.129 3.871 5 N -0.612 5.612 6 C 0.122 3.878 7 C -0.123 4.123 8 H 0.113 0.887 9 C 0.511 3.489 10 O -0.551 6.551 11 N -0.702 5.702 12 C 0.239 3.761 13 C -0.625 4.625 14 H 0.058 0.942 15 C 0.023 3.977 16 N -0.901 5.901 17 Si 1.075 2.925 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.286 1.286 21 C -0.145 4.145 22 C 0.521 3.479 23 O -0.538 6.538 24 H 0.039 0.961 25 H 0.040 0.960 26 H 0.086 0.914 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.395 0.605 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.272 0.728 37 H 0.111 0.889 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.608 12.254 10.909 21.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C -0.035 4.035 4 C 0.007 3.993 5 N -0.346 5.346 6 C -0.001 4.001 7 C -0.145 4.145 8 H 0.132 0.868 9 C 0.294 3.706 10 O -0.431 6.431 11 N -0.349 5.349 12 C 0.118 3.882 13 C -0.663 4.663 14 H 0.076 0.924 15 C -0.183 4.183 16 N -0.535 5.535 17 Si 0.902 3.098 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.212 1.212 21 C -0.186 4.186 22 C 0.309 3.691 23 O -0.416 6.416 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.105 0.895 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.228 0.772 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.083 0.917 37 H 0.129 0.871 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.367 11.432 10.301 19.742 hybrid contribution -1.336 1.251 0.926 2.051 sum -13.702 12.683 11.227 21.786 Atomic orbital electron populations 1.22735 0.81038 1.02851 0.99822 1.87905 1.19700 1.27510 1.95399 1.23052 0.94354 0.85271 1.00813 1.21419 0.92009 0.99821 0.86076 1.48232 1.66264 1.08171 1.11925 1.22007 1.04156 0.79597 0.94348 1.22252 1.00938 0.94272 0.97044 0.86849 1.19988 0.82568 0.84319 0.83708 1.90672 1.52942 1.50763 1.48695 1.46271 1.45596 1.37275 1.05774 1.19209 0.87562 0.85160 0.96296 1.22055 1.31208 1.22528 0.90506 0.92400 1.25878 0.92570 0.92309 1.07516 1.70771 1.39333 1.36236 1.07209 0.83450 0.76512 0.76459 0.73334 1.20562 1.21256 1.21243 1.22339 1.04521 0.92737 0.98969 1.20854 0.75813 0.88106 0.84299 1.90705 1.54380 1.13632 1.82876 0.94193 0.94167 0.89516 0.92244 0.92806 0.89197 0.88386 0.89017 0.89235 0.77231 0.96375 0.96392 0.91697 0.87123 0.87228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -3.91 9.89 -35.23 -0.35 -4.26 16 3 C 0.04 0.38 6.28 37.16 0.23 0.62 16 4 C 0.13 1.24 6.32 -4.04 -0.03 1.22 16 5 N -0.61 -7.43 2.88 -172.42 -0.50 -7.93 16 6 C 0.12 1.54 6.59 -3.13 -0.02 1.52 16 7 C -0.12 -1.62 3.54 -90.14 -0.32 -1.94 16 8 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 9 C 0.51 9.32 7.07 -10.98 -0.08 9.24 16 10 O -0.55 -12.17 15.57 5.56 0.09 -12.08 16 11 N -0.70 -13.91 5.50 -61.47 -0.34 -14.25 16 12 C 0.24 6.07 4.74 -5.19 -0.02 6.04 16 13 C -0.62 -16.73 9.28 -34.44 -0.32 -17.05 16 14 H 0.06 1.46 7.60 -52.49 -0.40 1.06 16 15 C 0.02 0.64 5.46 -17.82 -0.10 0.55 16 16 N -0.90 -26.85 13.65 55.43 0.76 -26.09 16 17 Si 1.08 24.00 29.90 -169.99 -5.08 18.92 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.29 -6.06 7.11 56.52 0.40 -5.65 16 20 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 21 C -0.15 -1.82 6.37 -26.74 -0.17 -1.99 16 22 C 0.52 7.25 8.02 -10.86 -0.09 7.17 16 23 O -0.54 -9.03 17.59 5.56 0.10 -8.94 16 24 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.10 0.90 7.92 -51.93 -0.41 0.49 16 31 H 0.09 1.11 7.44 -51.92 -0.39 0.72 16 32 H 0.09 1.27 7.06 -51.93 -0.37 0.91 16 33 H 0.39 6.75 8.32 -40.82 -0.34 6.41 16 34 H 0.02 0.51 8.01 -51.93 -0.42 0.09 16 35 H 0.02 0.50 8.01 -51.93 -0.42 0.09 16 36 H 0.27 8.19 7.22 -40.82 -0.29 7.90 16 37 H 0.11 1.47 7.89 -51.93 -0.41 1.06 16 38 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 325.59 15.07 4.91 4.91 Total: -1.00 -33.83 325.59 -5.83 -39.66 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.62 Total: 3.33 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 0.20 Total: 6.73 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: -0.08 Total: -48.26 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.16 Total: -25.28 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: -5.08 Total: 18.92 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.83 -5.83 -39.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330741998.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.923 kcal (2) G-P(sol) polarization free energy of solvation -33.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds