Wall clock time and date at job start Mon Mar 30 2020 01:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00047 * 2 1 4 4 C 1.52998 * 109.47217 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47384 * 65.00199 * 4 3 2 6 6 C 1.46758 * 124.34883 * 270.00290 * 5 4 3 7 7 C 1.54477 * 105.47416 * 162.95658 * 6 5 4 8 8 H 1.08998 * 111.00551 * 267.28182 * 7 6 5 9 9 C 1.50703 * 110.96999 * 143.53379 * 7 6 5 10 10 O 1.21283 * 120.00011 * 6.16499 * 9 7 6 11 11 N 1.34775 * 120.00072 * 186.17053 * 9 7 6 12 12 C 1.46506 * 119.99880 * 179.97438 * 11 9 7 13 13 C 1.50700 * 109.46957 * 179.97438 * 12 11 9 14 14 H 1.08002 * 119.99770 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00083 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00147 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00278 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47228 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.46793 * 300.00001 * 17 15 13 20 20 H 1.48500 * 109.47000 * 60.00094 * 17 15 13 21 21 C 1.54629 * 101.76461 * 25.41646 * 7 6 5 22 22 C 1.34419 * 124.35050 * 89.96726 * 5 4 3 23 23 O 1.21281 * 124.94022 * 0.40536 * 22 5 4 24 24 H 1.08999 * 109.47286 * 300.00215 * 1 2 3 25 25 H 1.09003 * 109.47019 * 60.00220 * 1 2 3 26 26 H 1.08999 * 109.46870 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47102 * 59.99969 * 3 2 1 28 28 H 1.08998 * 109.47028 * 299.99790 * 3 2 1 29 29 H 1.08997 * 109.47509 * 304.99846 * 4 3 2 30 30 H 1.09004 * 109.47053 * 184.99910 * 4 3 2 31 31 H 1.09007 * 110.24989 * 43.95448 * 6 5 4 32 32 H 1.09004 * 110.24431 * 281.96092 * 6 5 4 33 33 H 0.97002 * 120.00040 * 359.97438 * 11 9 7 34 34 H 1.08994 * 109.47197 * 60.00159 * 12 11 9 35 35 H 1.08998 * 109.47414 * 299.99840 * 12 11 9 36 36 H 0.97005 * 119.99661 * 359.97438 * 16 15 13 37 37 H 1.09000 * 110.48861 * 93.87671 * 21 7 6 38 38 H 1.08997 * 110.48601 * 216.38877 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1392 -0.8814 -1.4461 7 6 4.1815 -1.0885 -2.9763 8 1 3.1873 -1.3002 -3.3696 9 6 5.1490 -2.1833 -3.3459 10 8 5.6815 -2.8407 -2.4769 11 7 5.4224 -2.4318 -4.6420 12 6 6.3633 -3.4958 -5.0012 13 6 6.4915 -3.5677 -6.5010 14 1 5.9287 -2.8886 -7.1242 15 6 7.3272 -4.5006 -7.0775 16 7 8.0121 -5.3279 -6.3186 17 14 7.4866 -4.5894 -8.9366 18 1 8.4402 -5.6679 -9.3007 19 1 6.1584 -4.8798 -9.5339 20 1 7.9884 -3.2906 -9.4529 21 6 4.6892 0.2873 -3.4667 22 6 4.2842 1.2452 -2.3681 23 8 4.2424 2.4522 -2.4794 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8508 0.5686 0.8427 30 1 3.9784 2.1766 0.0902 31 1 3.2931 -1.4176 -1.0162 32 1 5.0709 -1.2208 -0.9935 33 1 4.9962 -1.9062 -5.3370 34 1 5.9956 -4.4492 -4.6222 35 1 7.3381 -3.2821 -4.5627 36 1 7.9296 -5.2816 -5.3532 37 1 5.7731 0.2752 -3.5818 38 1 4.2097 0.5578 -4.4074 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330741998.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:10 Heat of formation + Delta-G solvation = -151.230678 kcal Electronic energy + Delta-G solvation = -20735.731211 eV Core-core repulsion = 17383.899193 eV Total energy + Delta-G solvation = -3351.832018 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.91550 -40.31126 -38.80592 -37.36521 -36.41295 -34.72584 -34.11912 -30.55486 -28.93468 -28.58362 -27.19757 -25.36051 -24.11555 -23.57791 -21.24356 -20.51522 -19.43571 -18.34847 -18.15115 -17.45371 -17.05307 -16.79900 -16.39558 -16.24789 -16.08691 -15.62193 -15.44507 -14.85365 -14.82694 -14.55947 -14.34944 -14.13707 -13.74564 -13.34608 -13.12611 -13.07813 -12.89452 -12.55509 -12.50556 -12.42784 -12.07968 -11.90748 -11.24497 -10.96008 -10.75997 -10.74138 -10.64165 -9.98200 -9.80271 -8.76988 -6.52693 1.40512 1.57320 1.58117 1.66375 1.84013 1.85472 2.32632 2.59043 2.82800 3.10440 3.17291 3.32076 3.76586 3.81573 4.01422 4.12258 4.18084 4.31930 4.48161 4.50133 4.54647 4.55640 4.60806 4.74643 4.78770 4.82917 4.87791 4.89944 4.98969 5.42251 5.43930 5.56457 5.94423 6.09951 6.19579 6.34268 6.75485 7.00899 7.21588 7.38783 8.62711 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.031675 B = 0.003557 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.756748 B = 7870.156603 C = 8129.980310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.407 6.407 3 C 0.047 3.953 4 C 0.121 3.879 5 N -0.606 5.606 6 C 0.128 3.872 7 C -0.105 4.105 8 H 0.146 0.854 9 C 0.513 3.487 10 O -0.592 6.592 11 N -0.697 5.697 12 C 0.252 3.748 13 C -0.629 4.629 14 H 0.077 0.923 15 C -0.032 4.032 16 N -0.931 5.931 17 Si 1.128 2.872 18 H -0.288 1.288 19 H -0.263 1.263 20 H -0.265 1.265 21 C -0.140 4.140 22 C 0.519 3.481 23 O -0.569 6.569 24 H 0.054 0.946 25 H 0.041 0.959 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.042 0.958 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.072 0.928 33 H 0.411 0.589 34 H -0.013 1.013 35 H -0.014 1.014 36 H 0.255 0.745 37 H 0.102 0.898 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.410 13.544 10.123 22.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.327 6.327 3 C -0.030 4.030 4 C 0.000 4.000 5 N -0.339 5.339 6 C 0.005 3.995 7 C -0.127 4.127 8 H 0.163 0.837 9 C 0.299 3.701 10 O -0.473 6.473 11 N -0.346 5.346 12 C 0.128 3.872 13 C -0.667 4.667 14 H 0.095 0.905 15 C -0.231 4.231 16 N -0.567 5.567 17 Si 0.947 3.053 18 H -0.214 1.214 19 H -0.188 1.188 20 H -0.190 1.190 21 C -0.181 4.181 22 C 0.308 3.692 23 O -0.450 6.450 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.111 0.889 27 H 0.102 0.898 28 H 0.060 0.940 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.090 0.910 33 H 0.247 0.753 34 H 0.005 0.995 35 H 0.004 0.996 36 H 0.064 0.936 37 H 0.120 0.880 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.219 12.757 9.548 21.356 hybrid contribution -0.803 0.857 1.292 1.746 sum -15.022 13.614 10.840 22.989 Atomic orbital electron populations 1.22874 0.79757 1.03597 1.00625 1.87863 1.21179 1.28081 1.95561 1.23006 0.93485 0.85093 1.01413 1.21676 0.92889 1.00143 0.85316 1.48313 1.65405 1.07733 1.12409 1.21901 1.03779 0.80011 0.93847 1.22148 1.00571 0.92378 0.97588 0.83658 1.20789 0.82300 0.84595 0.82419 1.90662 1.54474 1.52487 1.49676 1.46010 1.45038 1.36421 1.07178 1.18706 0.87169 0.85513 0.95780 1.22443 1.30738 1.22365 0.91149 0.90479 1.27567 0.91929 0.91723 1.11843 1.70911 1.41348 1.38113 1.06358 0.82810 0.77458 0.77140 0.67881 1.21410 1.18807 1.18963 1.22354 1.04245 0.91642 0.99821 1.20980 0.75541 0.87777 0.84917 1.90692 1.55957 1.14849 1.83460 0.92763 0.93989 0.88876 0.89819 0.93974 0.87830 0.88004 0.87917 0.90960 0.75284 0.99476 0.99621 0.93581 0.87952 0.84767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.41 -7.36 9.89 -148.98 -1.47 -8.83 16 3 C 0.05 0.75 6.28 71.98 0.45 1.20 16 4 C 0.12 2.12 6.32 86.38 0.55 2.67 16 5 N -0.61 -13.73 2.88 -817.99 -2.36 -16.08 16 6 C 0.13 3.04 6.59 86.83 0.57 3.62 16 7 C -0.11 -2.55 3.54 -10.48 -0.04 -2.59 16 8 H 0.15 2.72 8.14 -2.39 -0.02 2.70 16 9 C 0.51 18.45 7.07 87.66 0.62 19.07 16 10 O -0.59 -26.60 15.57 -3.04 -0.05 -26.64 16 11 N -0.70 -27.28 5.50 -466.78 -2.57 -29.84 16 12 C 0.25 13.10 4.74 85.63 0.41 13.50 16 13 C -0.63 -33.47 9.28 25.60 0.24 -33.23 16 14 H 0.08 3.73 7.60 -2.91 -0.02 3.71 16 15 C -0.03 -1.76 5.46 84.65 0.46 -1.30 16 16 N -0.93 -56.82 13.65 21.45 0.29 -56.53 16 17 Si 1.13 47.09 29.90 68.60 2.05 49.14 16 18 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 20 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 21 C -0.14 -3.23 6.37 30.59 0.19 -3.04 16 22 C 0.52 13.63 8.02 87.90 0.71 14.33 16 23 O -0.57 -18.43 17.59 -3.03 -0.05 -18.49 16 24 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.10 1.73 7.92 -2.39 -0.02 1.71 16 31 H 0.10 2.28 7.44 -2.38 -0.02 2.26 16 32 H 0.07 2.02 7.06 -2.38 -0.02 2.01 16 33 H 0.41 13.26 8.32 -92.71 -0.77 12.49 16 34 H -0.01 -0.73 8.01 -2.39 -0.02 -0.75 16 35 H -0.01 -0.82 8.01 -2.39 -0.02 -0.83 16 36 H 0.25 16.06 7.22 -92.70 -0.67 15.39 16 37 H 0.10 2.59 7.89 -2.39 -0.02 2.57 16 38 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -74.57 325.59 1.65 -72.92 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.39 Total: 18.53 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 5.41 Total: 15.83 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -4.63 Total: -102.46 kcal Atomic # 8 Polarization: -52.39 SS G_CDS: -1.57 Total: -53.96 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.05 Total: 49.14 kcal Total: -74.57 1.65 -72.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330741998.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.307 kcal (2) G-P(sol) polarization free energy of solvation -74.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds