Wall clock time and date at job start Mon Mar 30 2020 01:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00077 * 2 1 4 4 O 1.20833 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00302 * 180.02562 * 3 2 1 6 6 H 1.08996 * 112.85095 * 48.79929 * 5 3 2 7 7 C 1.53782 * 113.61766 * 180.02562 * 5 3 2 8 8 C 1.53776 * 87.08293 * 139.97650 * 7 5 3 9 9 H 1.09007 * 113.61358 * 89.11637 * 8 7 5 10 10 N 1.46498 * 113.61635 * 220.01934 * 8 7 5 11 11 C 1.34778 * 120.00131 * 205.00407 * 10 8 7 12 12 O 1.21590 * 119.99922 * 359.97438 * 11 10 8 13 13 N 1.34783 * 120.00141 * 179.97438 * 11 10 8 14 14 C 1.46497 * 120.00162 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47221 * 180.02562 * 14 13 11 16 16 C 1.50703 * 109.47251 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99351 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99804 * 180.02562 * 16 15 14 19 19 N 1.31500 * 120.00206 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99726 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47271 * 89.99449 * 20 18 16 22 22 H 1.48499 * 109.47455 * 209.99967 * 20 18 16 23 23 H 1.48503 * 109.47012 * 329.99945 * 20 18 16 24 24 C 1.53783 * 87.08457 * 334.56823 * 8 7 5 25 25 H 1.09000 * 109.47070 * 300.00162 * 1 2 3 26 26 H 1.09001 * 109.46626 * 60.00180 * 1 2 3 27 27 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.08998 * 113.61482 * 254.52958 * 7 5 3 29 29 H 1.08997 * 113.61243 * 25.34236 * 7 5 3 30 30 H 0.96999 * 120.00488 * 24.99711 * 10 8 7 31 31 H 0.96997 * 119.99488 * 359.97438 * 13 11 10 32 32 H 1.09003 * 109.47097 * 299.99937 * 14 13 11 33 33 H 1.08997 * 109.47147 * 59.99624 * 14 13 11 34 34 H 1.09003 * 109.46871 * 299.99876 * 15 14 13 35 35 H 1.08997 * 109.47531 * 59.99659 * 15 14 13 36 36 H 0.97008 * 119.99909 * 179.97438 * 19 18 16 37 37 H 1.09003 * 113.60991 * 270.88700 * 24 8 7 38 38 H 1.08998 * 113.61765 * 139.98156 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0234 0.6365 -0.7566 7 6 4.1078 2.7142 0.0001 8 6 5.1814 2.2262 0.9870 9 1 6.0811 1.8479 0.5016 10 7 5.4708 3.1818 2.0591 11 6 6.6691 3.1601 2.6757 12 8 7.5097 2.3472 2.3426 13 7 6.9356 4.0396 3.6617 14 6 8.2378 4.0157 4.3324 15 6 8.2799 5.1074 5.4035 16 6 9.6197 5.0833 6.0930 17 1 10.3663 4.3611 5.7971 18 6 9.8919 5.9823 7.1023 19 7 8.9826 6.8612 7.4628 20 14 11.5524 5.9519 7.9574 21 1 12.4944 6.8496 7.2416 22 1 11.3958 6.4153 9.3595 23 1 12.0873 4.5666 7.9507 24 6 4.1917 1.1226 1.3961 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 4.5104 3.0297 -0.9624 29 1 3.4169 3.4404 0.4284 30 1 4.8002 3.8301 2.3251 31 1 6.2651 4.6883 3.9272 32 1 8.3879 3.0426 4.7999 33 1 9.0264 4.1930 3.6011 34 1 8.1296 6.0807 4.9363 35 1 7.4913 4.9297 6.1347 36 1 9.1741 7.4935 8.1732 37 1 3.5243 1.4135 2.2074 38 1 4.6621 0.1532 1.5607 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413434891.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:16 Heat of formation + Delta-G solvation = -107.162166 kcal Electronic energy + Delta-G solvation = -19842.042804 eV Core-core repulsion = 16492.121740 eV Total energy + Delta-G solvation = -3349.921064 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.17680 -39.79780 -38.33217 -36.63671 -34.79304 -33.38192 -32.67089 -29.55640 -28.60500 -26.11514 -26.06683 -24.54433 -21.92587 -20.94094 -20.58036 -19.95407 -18.16223 -17.92794 -17.19838 -16.70312 -16.34184 -15.59194 -15.53944 -15.07358 -14.50070 -14.32331 -13.81584 -13.56689 -13.50258 -13.27177 -12.83398 -12.65510 -12.32900 -12.27605 -11.69131 -11.49815 -11.17749 -11.16907 -11.06263 -10.97513 -10.63583 -10.60091 -10.30703 -9.93814 -9.54595 -9.25059 -9.02887 -8.48083 -8.25335 -6.08145 -4.10729 1.83489 2.33093 3.08225 3.30589 3.36732 3.41337 3.51934 4.00257 4.10617 4.39490 4.46635 4.55058 4.66607 4.72391 4.74807 4.81125 5.14931 5.27510 5.29027 5.33669 5.40786 5.57690 5.65279 5.94763 6.02381 6.31331 6.40949 6.60600 6.78869 7.00337 7.23981 7.39956 7.58032 7.64595 7.91076 8.26843 8.43201 8.93641 8.99505 9.53980 11.03527 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.050536 B = 0.002546 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.923504 B =10994.077504 C =11180.857580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.473 3.527 4 O -0.506 6.506 5 C -0.110 4.110 6 H 0.130 0.870 7 C -0.128 4.128 8 C 0.149 3.851 9 H 0.123 0.877 10 N -0.742 5.742 11 C 0.699 3.301 12 O -0.598 6.598 13 N -0.738 5.738 14 C 0.140 3.860 15 C 0.012 3.988 16 C -0.520 4.520 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.272 1.272 24 C -0.136 4.136 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.396 0.604 31 H 0.393 0.607 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.262 0.738 37 H 0.090 0.910 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.457 -11.272 -15.597 25.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.316 3.684 4 O -0.394 6.394 5 C -0.130 4.130 6 H 0.148 0.852 7 C -0.166 4.166 8 C 0.043 3.957 9 H 0.140 0.860 10 N -0.397 5.397 11 C 0.399 3.601 12 O -0.477 6.477 13 N -0.391 5.391 14 C 0.017 3.983 15 C -0.025 4.025 16 C -0.559 4.559 17 H 0.078 0.922 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.725 3.275 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.175 4.175 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.120 0.880 28 H 0.105 0.895 29 H 0.119 0.881 30 H 0.230 0.770 31 H 0.227 0.773 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.886 -11.572 -15.740 25.180 hybrid contribution -0.153 0.716 0.767 1.060 sum -16.038 -10.857 -14.973 24.480 Atomic orbital electron populations 1.23287 0.76353 1.03761 1.02584 1.86530 1.23422 1.33530 1.83922 1.23596 0.91717 0.81260 0.71821 1.90671 1.67031 1.36431 1.45247 1.22345 0.87168 1.01302 1.02161 0.85225 1.23409 0.97543 0.94541 1.01102 1.22137 0.97149 0.88929 0.87519 0.85957 1.45092 1.16037 1.38950 1.39592 1.16113 0.82059 0.81969 0.79995 1.90882 1.47110 1.41497 1.68193 1.45556 1.19456 1.36416 1.37702 1.21595 0.80928 1.00984 0.94786 1.19328 0.98027 0.92747 0.92405 1.21054 0.99405 1.17215 1.18237 0.92203 1.24998 0.97204 0.95289 0.96863 1.69954 1.33910 1.19551 1.29941 0.86507 0.83871 0.78460 0.78680 1.20567 1.21204 1.19716 1.23523 0.98287 1.01693 0.94045 0.91833 0.91899 0.88042 0.89537 0.88055 0.76976 0.77350 0.92764 0.92748 0.95974 0.95974 0.92869 0.89189 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.28 16 2 O -0.36 -3.18 10.57 -39.24 -0.41 -3.60 16 3 C 0.47 4.59 7.48 36.00 0.27 4.86 16 4 O -0.51 -6.21 15.65 -18.76 -0.29 -6.50 16 5 C -0.11 -0.85 4.26 -90.96 -0.39 -1.24 16 6 H 0.13 0.74 8.14 -51.93 -0.42 0.31 16 7 C -0.13 -1.04 7.16 -25.92 -0.19 -1.23 16 8 C 0.15 1.53 4.24 -67.12 -0.28 1.24 16 9 H 0.12 1.39 7.47 -51.92 -0.39 1.00 16 10 N -0.74 -9.05 5.36 -57.88 -0.31 -9.36 16 11 C 0.70 11.95 8.57 -86.91 -0.74 11.21 16 12 O -0.60 -12.51 15.94 5.29 0.08 -12.43 16 13 N -0.74 -12.96 5.56 -65.23 -0.36 -13.32 16 14 C 0.14 3.00 5.61 -4.05 -0.02 2.98 16 15 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 16 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 17 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.64 5.46 -17.83 -0.10 1.54 16 19 N -0.89 -26.20 13.28 55.43 0.74 -25.47 16 20 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 C -0.14 -1.21 7.43 -25.91 -0.19 -1.40 16 25 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 26 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 27 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.10 0.90 7.41 -51.93 -0.38 0.51 16 30 H 0.40 3.88 8.74 -40.82 -0.36 3.53 16 31 H 0.39 5.94 8.49 -40.82 -0.35 5.59 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 329.83 15.07 4.97 4.97 Total: -1.00 -34.12 329.83 -7.31 -41.43 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.66 Total: 3.24 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -1.03 Total: 4.62 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 0.06 Total: -48.14 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.62 Total: -22.52 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.12 -7.31 -41.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413434891.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.733 kcal (2) G-P(sol) polarization free energy of solvation -34.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds