Wall clock time and date at job start Mon Mar 30 2020 02:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99921 * 2 1 4 4 H 1.48506 * 109.47249 * 275.48019 * 3 2 1 5 5 H 1.48499 * 109.47376 * 35.48296 * 3 2 1 6 6 H 1.48504 * 109.47249 * 155.48473 * 3 2 1 7 7 C 1.37881 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99772 * 348.95186 * 7 2 1 9 9 C 1.50695 * 120.00273 * 168.95039 * 7 2 1 10 10 C 1.53002 * 115.56179 * 320.10121 * 9 7 2 11 11 N 1.46500 * 109.47299 * 268.85931 * 10 9 7 12 12 C 1.34777 * 120.00200 * 185.07919 * 11 10 9 13 13 O 1.21586 * 119.99898 * 354.92371 * 12 11 10 14 14 N 1.34775 * 119.99804 * 174.92136 * 12 11 10 15 15 C 1.46930 * 120.63240 * 4.74658 * 14 12 11 16 16 C 1.52759 * 109.00484 * 233.58337 * 15 14 12 17 17 C 1.53039 * 109.38822 * 305.58481 * 16 15 14 18 18 C 1.53042 * 109.53308 * 61.23988 * 17 16 15 19 19 H 1.08999 * 109.49772 * 58.59426 * 18 17 16 20 20 F 1.39907 * 109.52412 * 178.66849 * 18 17 16 21 21 C 1.46929 * 120.62873 * 185.02306 * 14 12 11 22 22 C 1.52994 * 117.49945 * 174.41385 * 9 7 2 23 23 C 1.53007 * 60.03074 * 252.52149 * 22 9 7 24 24 H 0.96996 * 119.99427 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47361 * 28.85364 * 10 9 7 26 26 H 1.08999 * 109.47495 * 148.85773 * 10 9 7 27 27 H 0.97001 * 119.99706 * 5.07758 * 11 10 9 28 28 H 1.08994 * 109.58625 * 353.41412 * 15 14 12 29 29 H 1.09001 * 109.58653 * 113.84609 * 15 14 12 30 30 H 1.09000 * 109.56264 * 185.55306 * 16 15 14 31 31 H 1.09003 * 109.38979 * 65.51747 * 16 15 14 32 32 H 1.09008 * 109.46040 * 301.22730 * 17 16 15 33 33 H 1.08996 * 109.46812 * 181.26008 * 17 16 15 34 34 H 1.08997 * 109.58506 * 246.15658 * 21 14 12 35 35 H 1.09000 * 109.58729 * 6.58230 * 21 14 12 36 36 H 1.08998 * 117.50031 * 145.02023 * 22 9 7 37 37 H 1.08998 * 117.50146 * 0.02562 * 22 9 7 38 38 H 1.08996 * 117.50012 * 107.48048 * 23 22 9 39 39 H 1.09002 * 117.49835 * 252.47424 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3809 2.1133 -1.3937 5 1 1.5094 2.6165 0.8127 6 1 3.5999 1.4095 0.5810 7 6 2.0046 -1.1941 0.0005 8 1 1.4796 -2.1206 0.1802 9 6 3.4906 -1.2063 -0.2496 10 6 3.9862 -0.2429 -1.3300 11 7 4.0014 -0.9276 -2.6251 12 6 4.5007 -0.3046 -3.7109 13 8 4.8532 0.8567 -3.6371 14 7 4.6093 -0.9689 -4.8785 15 6 4.0929 -2.3380 -5.0118 16 6 5.2069 -3.2407 -5.5387 17 6 5.7680 -2.6514 -6.8349 18 6 6.3576 -1.2672 -6.5544 19 1 7.1411 -1.3513 -5.8013 20 9 6.8977 -0.7415 -7.7331 21 6 5.2518 -0.3399 -6.0407 22 6 4.2200 -2.5436 -0.1071 23 6 4.4073 -1.4544 0.9510 24 1 -0.4849 0.8401 0.0004 25 1 3.3200 0.6183 -1.3822 26 1 4.9940 0.0917 -1.0840 27 1 3.6522 -1.8293 -2.7011 28 1 3.7611 -2.6996 -4.0386 29 1 3.2574 -2.3468 -5.7117 30 1 4.8081 -4.2361 -5.7345 31 1 6.0013 -3.3068 -4.7953 32 1 4.9679 -2.5631 -7.5699 33 1 6.5477 -3.3062 -7.2239 34 1 4.5126 -0.1826 -6.8261 35 1 5.6842 0.6163 -5.7461 36 1 5.0529 -2.7371 -0.7831 37 1 3.6250 -3.4147 0.1671 38 1 3.9352 -1.6087 1.9212 39 1 5.3635 -0.9316 0.9714 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564800236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:01 Heat of formation + Delta-G solvation = -44.874352 kcal Electronic energy + Delta-G solvation = -21552.177216 eV Core-core repulsion = 18217.329944 eV Total energy + Delta-G solvation = -3334.847272 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -47.83609 -40.19578 -37.71280 -36.77664 -33.67013 -32.57799 -32.27766 -30.68959 -27.30349 -25.71397 -24.56372 -23.24582 -21.72177 -21.17412 -19.57811 -19.26544 -18.17917 -16.66905 -16.32495 -15.94500 -15.87872 -15.50797 -15.24083 -14.80237 -14.38757 -14.05400 -13.61063 -13.40994 -13.24998 -12.99777 -12.81199 -12.61080 -12.31690 -12.06091 -11.54650 -11.31812 -11.10214 -10.96113 -10.67317 -10.64491 -10.47594 -10.23139 -9.89108 -9.54261 -9.34494 -9.02031 -8.76549 -8.48094 -8.18003 -6.23032 -4.19750 2.72211 3.29475 3.38679 3.42218 3.46624 4.07364 4.27525 4.33400 4.37926 4.43232 4.59355 4.77654 4.78283 5.06247 5.19349 5.28040 5.37680 5.47539 5.50935 5.56764 5.60688 5.69246 5.76316 5.88710 5.98387 6.08671 6.15369 6.34427 6.39851 6.51037 6.65723 6.85381 6.98529 7.04519 7.15852 7.63097 8.27661 8.37832 8.79633 8.89358 9.40658 10.87976 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.025614 B = 0.005328 C = 0.005000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.890339 B = 5254.340391 C = 5598.265980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.079 3.921 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.260 1.260 7 C -0.489 4.489 8 H 0.079 0.921 9 C -0.008 4.008 10 C 0.163 3.837 11 N -0.722 5.722 12 C 0.704 3.296 13 O -0.594 6.594 14 N -0.632 5.632 15 C 0.106 3.894 16 C -0.132 4.132 17 C -0.144 4.144 18 C 0.077 3.923 19 H 0.086 0.914 20 F -0.210 7.210 21 C 0.109 3.891 22 C -0.187 4.187 23 C -0.196 4.196 24 H 0.267 0.733 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.399 0.601 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.622 -6.993 -11.789 17.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.125 4.125 3 Si 0.711 3.289 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.184 1.184 7 C -0.526 4.526 8 H 0.097 0.903 9 C -0.009 4.009 10 C 0.040 3.960 11 N -0.378 5.378 12 C 0.406 3.594 13 O -0.473 6.473 14 N -0.371 5.371 15 C -0.017 4.017 16 C -0.171 4.171 17 C -0.182 4.182 18 C 0.040 3.960 19 H 0.104 0.896 20 F -0.190 7.190 21 C -0.016 4.016 22 C -0.224 4.224 23 C -0.234 4.234 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.236 0.764 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.122 0.878 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.696 -6.006 -11.699 16.951 hybrid contribution 0.220 0.430 -0.100 0.493 sum 10.915 -5.575 -11.799 17.013 Atomic orbital electron populations 1.69904 1.06394 1.27450 1.48450 1.24984 0.94628 0.99194 0.93647 0.86962 0.80616 0.83447 0.77890 1.20194 1.22328 1.18415 1.20291 0.87706 0.95027 1.49578 0.90267 1.19600 0.94590 0.93411 0.93307 1.21309 0.99194 0.95002 0.80479 1.45334 1.65232 1.19436 1.07775 1.15889 0.78969 0.84540 0.80015 1.90889 1.57145 1.15237 1.84019 1.47075 1.63467 1.15757 1.10776 1.21632 0.96203 0.81346 1.02541 1.21818 0.99043 0.99301 0.96902 1.22108 1.01716 0.95425 0.98904 1.21959 0.96445 0.93872 0.83773 0.89554 1.92812 1.87532 1.88314 1.50389 1.21851 0.94526 0.97221 0.87967 1.22756 1.02608 0.93639 1.03416 1.23156 1.00771 1.03912 0.95602 0.92307 0.92063 0.92977 0.76366 0.89379 0.90930 0.89656 0.90944 0.90454 0.90526 0.90743 0.87834 0.90915 0.89663 0.89250 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.96 55.43 0.77 -25.42 16 2 C 0.08 2.22 5.43 -17.82 -0.10 2.13 16 3 Si 0.88 22.23 24.34 -169.99 -4.14 18.09 16 4 H -0.27 -7.17 6.79 56.52 0.38 -6.78 16 5 H -0.30 -7.43 7.11 56.52 0.40 -7.02 16 6 H -0.26 -6.27 6.72 56.52 0.38 -5.89 16 7 C -0.49 -13.01 9.55 -34.44 -0.33 -13.34 16 8 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 9 C -0.01 -0.17 1.25 -155.63 -0.19 -0.37 16 10 C 0.16 3.62 4.41 -4.04 -0.02 3.60 16 11 N -0.72 -13.75 5.31 -65.22 -0.35 -14.09 16 12 C 0.70 13.35 8.30 -86.92 -0.72 12.62 16 13 O -0.59 -13.59 15.79 5.29 0.08 -13.50 16 14 N -0.63 -8.95 2.98 -178.76 -0.53 -9.48 16 15 C 0.11 1.12 6.40 -3.93 -0.03 1.09 16 16 C -0.13 -1.06 6.06 -26.83 -0.16 -1.22 16 17 C -0.14 -1.18 5.62 -26.69 -0.15 -1.33 16 18 C 0.08 0.80 4.03 -26.61 -0.11 0.70 16 19 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 20 F -0.21 -2.47 17.09 2.25 0.04 -2.43 16 21 C 0.11 1.37 6.16 -3.71 -0.02 1.35 16 22 C -0.19 -3.46 9.46 -26.73 -0.25 -3.71 16 23 C -0.20 -3.92 9.88 -26.69 -0.26 -4.19 16 24 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.06 1.54 2.68 -51.93 -0.14 1.40 16 26 H 0.05 1.13 7.88 -51.93 -0.41 0.72 16 27 H 0.40 6.68 5.65 -40.82 -0.23 6.45 16 28 H 0.09 0.94 5.57 -51.93 -0.29 0.65 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.10 1.51 7.03 -51.93 -0.37 1.14 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 38 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 39 H 0.07 1.30 8.03 -51.93 -0.42 0.89 16 LS Contribution 311.27 15.07 4.69 4.69 Total: -1.00 -31.79 311.27 -7.45 -39.24 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.68 Total: 5.57 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -2.34 Total: -2.66 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.11 Total: -49.00 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.08 Total: -13.50 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.14 Total: 18.09 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.79 -7.45 -39.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564800236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.632 kcal (2) G-P(sol) polarization free energy of solvation -31.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds