Wall clock time and date at job start Mon Mar 30 2020 01:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34235 * 116.99602 * 2 1 4 4 O 1.20822 * 119.99896 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99822 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.46919 * 179.97438 * 5 3 2 7 7 N 1.46502 * 109.46839 * 179.97438 * 6 5 3 8 8 C 1.46755 * 124.35153 * 269.72622 * 7 6 5 9 9 C 1.54659 * 105.38679 * 162.85748 * 8 7 6 10 10 C 1.54630 * 101.68161 * 25.76803 * 9 8 7 11 11 H 1.08994 * 110.60410 * 93.72504 * 10 9 8 12 12 N 1.46508 * 110.48657 * 216.31450 * 10 9 8 13 13 C 1.46498 * 120.00226 * 56.22298 * 12 10 9 14 14 C 1.36935 * 119.99693 * 236.22846 * 12 10 9 15 15 H 1.08003 * 120.00397 * 327.84575 * 14 12 10 16 16 C 1.38817 * 120.00128 * 147.84612 * 14 12 10 17 17 N 1.31614 * 120.00052 * 154.12954 * 16 14 12 18 18 Si 1.86802 * 119.99729 * 334.13054 * 16 14 12 19 19 H 1.48504 * 109.46890 * 95.19235 * 18 16 14 20 20 H 1.48502 * 109.47017 * 215.19071 * 18 16 14 21 21 H 1.48500 * 109.47120 * 335.19152 * 18 16 14 22 22 C 1.34421 * 124.34818 * 90.03251 * 7 6 5 23 23 O 1.21278 * 124.94374 * 0.42154 * 22 7 6 24 24 H 1.08998 * 109.47178 * 60.00338 * 1 2 3 25 25 H 1.09004 * 109.46568 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47448 * 299.99771 * 1 2 3 27 27 H 1.09004 * 109.46812 * 60.00053 * 5 3 2 28 28 H 1.08996 * 109.47402 * 300.00463 * 5 3 2 29 29 H 1.08995 * 109.47328 * 300.00162 * 6 5 3 30 30 H 1.09004 * 109.47108 * 60.00513 * 6 5 3 31 31 H 1.09006 * 110.24927 * 281.98803 * 8 7 6 32 32 H 1.08996 * 110.24876 * 43.98727 * 8 7 6 33 33 H 1.09002 * 111.19284 * 267.59619 * 9 8 7 34 34 H 1.09002 * 110.85856 * 143.79086 * 9 8 7 35 35 H 1.09002 * 109.46821 * 95.45865 * 13 12 10 36 36 H 1.08996 * 109.47490 * 215.45981 * 13 12 10 37 37 H 1.09005 * 109.46927 * 335.46865 * 13 12 10 38 38 H 0.97003 * 119.99986 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 3.9999 2.7422 -0.0002 7 7 5.4630 2.8189 0.0010 8 6 6.2886 2.8690 1.2132 9 6 7.7181 2.5012 0.7516 10 6 7.6858 2.9252 -0.7351 11 1 8.0634 3.9409 -0.8525 12 7 8.4660 1.9919 -1.5515 13 6 8.1506 0.5614 -1.5321 14 6 9.4901 2.4567 -2.3327 15 1 9.4314 3.4425 -2.7698 16 6 10.6039 1.6607 -2.5629 17 7 11.3223 1.8332 -3.6522 18 14 11.0829 0.3447 -1.3268 19 1 10.5094 -0.9597 -1.7452 20 1 12.5628 0.2380 -1.2658 21 1 10.5573 0.7095 0.0133 22 6 6.2213 2.8584 -1.1082 23 8 5.7936 2.8430 -2.2430 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.9563 0.7807 -0.8892 28 1 3.9557 0.7811 0.8907 29 1 3.6106 3.2357 -0.8906 30 1 3.6099 3.2369 0.8894 31 1 6.2732 3.8724 1.6390 32 1 5.9309 2.1432 1.9435 33 1 7.9002 1.4309 0.8481 34 1 8.4636 3.0731 1.3042 35 1 7.4918 0.3233 -2.3672 36 1 9.0715 -0.0150 -1.6199 37 1 7.6535 0.3117 -0.5947 38 1 12.1003 1.2767 -3.8132 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595307117.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:05 Heat of formation + Delta-G solvation = -78.241149 kcal Electronic energy + Delta-G solvation = -21266.559303 eV Core-core repulsion = 17917.892348 eV Total energy + Delta-G solvation = -3348.666955 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.74628 -40.00634 -36.86151 -36.02213 -35.63792 -33.24261 -31.47731 -29.70252 -27.80750 -27.15270 -25.98075 -24.47475 -22.72683 -21.16211 -20.47094 -18.84783 -17.85833 -17.12630 -16.86840 -16.84047 -16.06300 -15.99025 -15.33163 -14.88746 -14.33521 -14.05995 -13.44086 -13.37671 -13.24114 -13.07101 -12.86493 -12.61716 -12.33882 -12.20272 -12.18198 -11.84758 -11.43894 -11.30104 -11.06122 -11.01857 -10.75282 -10.57380 -10.52623 -10.00177 -9.63936 -9.31521 -8.57814 -8.47972 -6.96827 -6.01723 -3.37800 1.97834 2.37141 3.10453 3.27944 3.30015 3.44242 3.48346 4.49812 4.53094 4.68477 4.73764 4.81514 4.82938 4.89960 4.97881 5.08203 5.21428 5.24146 5.29956 5.39144 5.47989 5.62294 5.69098 5.78964 5.95313 6.10072 6.13932 6.30091 6.46453 6.51985 6.74200 6.77835 7.38832 7.49723 7.92871 8.30566 8.67181 8.90937 9.66331 10.00236 11.13646 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.029861 B = 0.004412 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.454395 B = 6344.395108 C = 6517.001912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.469 3.531 4 O -0.509 6.509 5 C -0.134 4.134 6 C 0.141 3.859 7 N -0.631 5.631 8 C 0.107 3.893 9 C -0.155 4.155 10 C 0.152 3.848 11 H 0.110 0.890 12 N -0.583 5.583 13 C 0.109 3.891 14 C -0.272 4.272 15 H 0.083 0.917 16 C 0.036 3.964 17 N -0.893 5.893 18 Si 0.882 3.118 19 H -0.287 1.287 20 H -0.302 1.302 21 H -0.270 1.270 22 C 0.499 3.501 23 O -0.515 6.515 24 H 0.063 0.937 25 H 0.101 0.899 26 H 0.062 0.938 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.023 0.977 36 H 0.043 0.957 37 H 0.034 0.966 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.420 -2.638 13.661 21.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.312 3.688 4 O -0.397 6.397 5 C -0.173 4.173 6 C 0.018 3.982 7 N -0.368 5.368 8 C -0.016 4.016 9 C -0.195 4.195 10 C 0.040 3.960 11 H 0.128 0.872 12 N -0.305 5.305 13 C -0.035 4.035 14 C -0.400 4.400 15 H 0.101 0.899 16 C -0.165 4.165 17 N -0.533 5.533 18 Si 0.713 3.287 19 H -0.215 1.215 20 H -0.231 1.231 21 H -0.195 1.195 22 C 0.285 3.715 23 O -0.388 6.388 24 H 0.082 0.918 25 H 0.119 0.881 26 H 0.081 0.919 27 H 0.130 0.870 28 H 0.126 0.874 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.041 0.959 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.759 -2.397 12.881 21.273 hybrid contribution 0.039 -0.895 0.714 1.145 sum -16.720 -3.292 13.595 21.800 Atomic orbital electron populations 1.23269 0.76320 1.03692 1.02578 1.86530 1.23495 1.33567 1.84084 1.23698 0.91950 0.81288 0.71912 1.90674 1.67329 1.36269 1.45419 1.21875 0.87261 1.01489 1.06649 1.20970 0.79764 0.93043 1.04401 1.48403 1.05040 1.75030 1.08373 1.22097 0.91214 1.01305 0.87011 1.23278 0.94720 1.03238 0.98283 1.21104 0.88068 0.97392 0.89457 0.87238 1.43764 1.35477 1.01478 1.49751 1.21374 0.98782 0.85335 0.98048 1.18801 0.94400 1.04003 1.22773 0.89941 1.25290 0.96317 0.98193 0.96703 1.69923 1.19219 1.41015 1.23183 0.86905 0.76247 0.81581 0.83992 1.21514 1.23069 1.19525 1.22461 0.90901 0.74094 0.84007 1.90662 1.78626 1.48255 1.21238 0.91809 0.88106 0.91900 0.86984 0.87398 0.89285 0.89803 0.91289 0.91266 0.90004 0.89419 0.95886 0.93915 0.94720 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.89 10.57 -39.27 -0.41 -4.30 16 3 C 0.47 5.56 7.96 36.00 0.29 5.85 16 4 O -0.51 -7.15 15.73 -18.75 -0.29 -7.45 16 5 C -0.13 -1.48 6.13 -27.89 -0.17 -1.65 16 6 C 0.14 1.76 5.22 -4.04 -0.02 1.73 16 7 N -0.63 -8.95 2.93 -172.31 -0.51 -9.46 16 8 C 0.11 1.20 7.35 -3.03 -0.02 1.17 16 9 C -0.16 -2.22 6.68 -25.00 -0.17 -2.39 16 10 C 0.15 2.93 3.42 -67.93 -0.23 2.69 16 11 H 0.11 2.11 7.94 -51.93 -0.41 1.69 16 12 N -0.58 -13.91 2.54 -173.49 -0.44 -14.35 16 13 C 0.11 2.42 8.97 59.85 0.54 2.96 16 14 C -0.27 -7.64 9.88 -15.06 -0.15 -7.79 16 15 H 0.08 2.50 8.06 -52.48 -0.42 2.08 16 16 C 0.04 1.03 5.29 -17.43 -0.09 0.93 16 17 N -0.89 -27.28 13.97 55.49 0.78 -26.50 16 18 Si 0.88 21.72 25.06 -169.99 -4.26 17.46 16 19 H -0.29 -6.93 6.63 56.52 0.37 -6.56 16 20 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 C 0.50 9.51 7.13 -10.86 -0.08 9.43 16 23 O -0.51 -12.04 17.59 5.56 0.10 -11.94 16 24 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 25 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 27 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.09 1.29 7.88 -51.93 -0.41 0.88 16 30 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.24 6.21 -51.93 -0.32 0.91 16 34 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.04 1.01 2.62 -51.93 -0.14 0.87 16 37 H 0.03 0.64 6.30 -51.93 -0.33 0.31 16 38 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 316.52 15.07 4.77 4.77 Total: -1.00 -35.00 316.52 -4.73 -39.73 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -5.42 Total: -2.23 kcal Atomic # 6 Polarization: 13.32 SS G_CDS: 0.96 Total: 14.28 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -0.17 Total: -50.31 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.61 Total: -23.69 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.26 Total: 17.46 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.00 -4.73 -39.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595307117.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.511 kcal (2) G-P(sol) polarization free energy of solvation -34.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds