Wall clock time and date at job start Mon Mar 30 2020 00:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47165 * 2 1 4 4 C 1.42895 * 113.99811 * 185.12471 * 3 2 1 5 5 H 1.08997 * 109.47487 * 337.30342 * 4 3 2 6 6 C 1.50700 * 109.47161 * 217.30697 * 4 3 2 7 7 O 1.21284 * 119.99921 * 354.99651 * 6 4 3 8 8 N 1.34779 * 120.00171 * 175.00009 * 6 4 3 9 9 C 1.46502 * 119.99886 * 179.97438 * 8 6 4 10 10 C 1.50696 * 109.47004 * 179.97438 * 9 8 6 11 11 O 1.21294 * 120.00208 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00052 * 179.97438 * 10 9 8 13 13 C 1.37098 * 119.99922 * 179.97438 * 12 10 9 14 14 H 1.08000 * 119.99997 * 0.02562 * 13 12 10 15 15 C 1.38947 * 119.99599 * 180.02562 * 13 12 10 16 16 N 1.31408 * 120.00072 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99765 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46969 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.46871 * 120.00263 * 17 15 13 20 20 H 1.48493 * 109.47060 * 240.00326 * 17 15 13 21 21 C 1.53001 * 109.47399 * 97.30602 * 4 3 2 22 22 C 1.53004 * 117.51569 * 347.00030 * 21 4 3 23 23 C 1.52996 * 60.00001 * 107.48034 * 22 21 4 24 24 H 1.08995 * 109.47387 * 300.00686 * 1 2 3 25 25 H 1.08997 * 109.46946 * 60.00654 * 1 2 3 26 26 H 1.09003 * 109.46894 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47387 * 239.99314 * 2 1 3 28 28 H 1.09005 * 109.46863 * 119.99708 * 2 1 3 29 29 H 0.97003 * 119.99812 * 0.02562 * 8 6 4 30 30 H 1.09008 * 109.46805 * 300.00096 * 9 8 6 31 31 H 1.08998 * 109.47123 * 59.99807 * 9 8 6 32 32 H 0.96998 * 119.99556 * 0.02562 * 12 10 9 33 33 H 0.97007 * 119.99604 * 179.97438 * 16 15 13 34 34 H 1.09003 * 115.55126 * 201.29423 * 21 4 3 35 35 H 1.09002 * 117.49133 * 214.97007 * 22 21 4 36 36 H 1.08997 * 117.50016 * 359.97438 * 22 21 4 37 37 H 1.09000 * 117.49658 * 252.50667 * 23 22 21 38 38 H 1.08997 * 117.50320 * 107.49270 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4259 1.4618 -0.1166 5 1 3.8937 0.5345 0.2142 6 6 3.9101 2.6024 0.7411 7 8 3.1107 3.3099 1.3169 8 7 5.2313 2.8363 0.8685 9 6 5.7018 3.9455 1.7019 10 6 7.2079 3.9891 1.6765 11 8 7.8274 3.1741 1.0258 12 7 7.8667 4.9343 2.3759 13 6 9.2369 4.9736 2.3532 14 1 9.7884 4.2474 1.7745 15 6 9.9159 5.9477 3.0747 16 7 9.2448 6.8309 3.7793 17 14 11.7829 6.0018 3.0432 18 1 12.2954 4.9065 2.1812 19 1 12.2311 7.3092 2.5004 20 1 12.3063 5.8329 4.4226 21 6 3.7980 1.7280 -1.5766 22 6 2.7105 1.5195 -2.6325 23 6 3.1542 2.9357 -2.2607 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 5.8705 2.2707 0.4076 30 1 5.3041 4.8841 1.3158 31 1 5.3601 3.8003 2.7267 32 1 7.3712 5.5862 2.8960 33 1 9.7190 7.5107 4.2833 34 1 4.8226 1.4797 -1.8535 35 1 3.0198 1.1340 -3.6040 36 1 1.7299 1.1921 -2.2872 37 1 2.4654 3.5403 -1.6708 38 1 3.7553 3.4820 -2.9876 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599933057.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:37 Heat of formation + Delta-G solvation = -99.014587 kcal Electronic energy + Delta-G solvation = -20568.734634 eV Core-core repulsion = 17219.166875 eV Total energy + Delta-G solvation = -3349.567758 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.15812 -38.59765 -37.69339 -36.14512 -34.43380 -33.65004 -31.62078 -31.38288 -29.01357 -26.71332 -24.39737 -23.18524 -22.35798 -21.51494 -19.91242 -19.59617 -18.16643 -17.38405 -16.96945 -16.63118 -15.61928 -15.13992 -15.11200 -15.04227 -14.63204 -14.30198 -13.99632 -13.60902 -13.42440 -12.78727 -12.65191 -12.41541 -12.20001 -11.95834 -11.64758 -11.58968 -11.45821 -11.33129 -11.15035 -10.68592 -10.49684 -10.41800 -10.33185 -9.89598 -9.65847 -9.30380 -8.78741 -8.64462 -8.11260 -6.52505 -3.94560 2.76823 2.93542 3.09517 3.21862 3.28519 3.58596 3.72931 3.94273 4.12358 4.48706 4.73590 4.76224 4.86438 4.87324 4.97549 5.13795 5.15590 5.16502 5.19780 5.25078 5.46769 5.58094 5.69789 5.80429 5.89784 5.90780 5.96082 6.04187 6.06463 6.14326 6.66344 6.95347 7.45213 7.81124 7.91167 8.42544 8.47003 9.03586 9.38278 9.85953 10.64435 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.039705 B = 0.003345 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.026823 B = 8369.036958 C = 8635.434560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.353 6.353 4 C 0.106 3.894 5 H 0.091 0.909 6 C 0.515 3.485 7 O -0.530 6.530 8 N -0.703 5.703 9 C 0.110 3.890 10 C 0.429 3.571 11 O -0.598 6.598 12 N -0.549 5.549 13 C -0.305 4.305 14 H 0.106 0.894 15 C 0.025 3.975 16 N -0.894 5.894 17 Si 0.932 3.068 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.183 4.183 22 C -0.166 4.166 23 C -0.164 4.164 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.410 0.590 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.396 0.604 33 H 0.274 0.726 34 H 0.120 0.880 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.027 -11.068 -8.517 19.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.271 6.271 4 C 0.044 3.956 5 H 0.109 0.891 6 C 0.300 3.700 7 O -0.406 6.406 8 N -0.359 5.359 9 C -0.017 4.017 10 C 0.214 3.786 11 O -0.484 6.484 12 N -0.184 5.184 13 C -0.434 4.434 14 H 0.124 0.876 15 C -0.177 4.177 16 N -0.534 5.534 17 Si 0.759 3.241 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.202 4.202 22 C -0.203 4.203 23 C -0.201 4.201 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.248 0.752 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.230 0.770 33 H 0.084 0.916 34 H 0.138 0.862 35 H 0.111 0.889 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.237 -10.758 -8.376 19.003 hybrid contribution 1.202 0.058 0.184 1.218 sum -12.035 -10.701 -8.192 18.068 Atomic orbital electron populations 1.21727 0.93520 1.02120 1.03355 1.22640 0.95820 0.83766 1.00279 1.88023 1.18740 1.26193 1.94109 1.21278 0.83550 0.97680 0.93053 0.89142 1.20235 0.82376 0.85780 0.81649 1.90701 1.54412 1.48442 1.47012 1.45586 1.06660 1.33403 1.50225 1.20950 0.94180 0.90572 0.96019 1.19731 0.88130 0.85203 0.85493 1.90492 1.68490 1.42433 1.47019 1.41806 1.07521 1.27179 1.41874 1.19777 0.80989 1.14311 1.28324 0.87617 1.25331 1.00982 0.95454 0.95976 1.69625 1.36724 1.16963 1.30123 0.85758 0.81825 0.78359 0.78150 1.19129 1.20606 1.20607 1.22721 0.99092 1.06291 0.92111 1.22935 0.99073 1.00149 0.98135 1.22907 1.03322 0.90928 1.02931 0.91622 0.91862 0.91111 0.92937 0.93214 0.75193 0.89800 0.89839 0.77021 0.91624 0.86247 0.88869 0.88041 0.88164 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.16 0.38 -0.82 16 2 C 0.05 0.49 5.63 37.16 0.21 0.70 16 3 O -0.35 -4.64 8.24 -55.09 -0.45 -5.10 16 4 C 0.11 1.35 2.97 -27.88 -0.08 1.27 16 5 H 0.09 0.95 7.74 -51.93 -0.40 0.55 16 6 C 0.52 8.48 6.94 -10.98 -0.08 8.41 16 7 O -0.53 -10.62 16.51 -14.31 -0.24 -10.86 16 8 N -0.70 -11.76 5.49 -61.47 -0.34 -12.10 16 9 C 0.11 2.05 6.15 -5.19 -0.03 2.02 16 10 C 0.43 9.79 7.85 -10.99 -0.09 9.70 16 11 O -0.60 -15.12 15.24 5.55 0.08 -15.04 16 12 N -0.55 -13.59 5.29 -10.96 -0.06 -13.65 16 13 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 14 H 0.11 2.98 7.16 -52.49 -0.38 2.61 16 15 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 16 N -0.89 -23.86 13.05 55.50 0.72 -23.14 16 17 Si 0.93 20.46 29.55 -169.99 -5.02 15.43 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 C -0.18 -2.05 5.76 -90.62 -0.52 -2.57 16 22 C -0.17 -1.62 9.56 -26.73 -0.26 -1.87 16 23 C -0.16 -1.92 9.86 -26.73 -0.26 -2.18 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.41 7.55 -51.93 -0.39 0.02 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.41 6.61 7.44 -40.82 -0.30 6.30 16 30 H 0.08 1.51 8.14 -51.92 -0.42 1.09 16 31 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 32 H 0.40 9.45 7.90 -40.82 -0.32 9.13 16 33 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 34 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.10 1.00 6.22 -51.93 -0.32 0.67 16 37 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 328.60 15.07 4.95 4.95 Total: -1.00 -31.73 328.60 -6.80 -38.53 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -5.48 Total: 14.15 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -0.97 Total: 6.81 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.33 Total: -48.89 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.61 Total: -31.00 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.73 -6.80 -38.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599933057.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.484 kcal (2) G-P(sol) polarization free energy of solvation -31.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds