Wall clock time and date at job start Mon Mar 30 2020 00:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47165 * 2 1 4 4 C 1.42895 * 113.99811 * 185.12471 * 3 2 1 5 5 H 1.08997 * 109.47487 * 337.30342 * 4 3 2 6 6 C 1.50700 * 109.47161 * 217.30697 * 4 3 2 7 7 O 1.21284 * 119.99921 * 354.99651 * 6 4 3 8 8 N 1.34779 * 120.00171 * 175.00009 * 6 4 3 9 9 C 1.46502 * 119.99886 * 179.97438 * 8 6 4 10 10 C 1.50696 * 109.47004 * 179.97438 * 9 8 6 11 11 O 1.21294 * 120.00208 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00052 * 179.97438 * 10 9 8 13 13 C 1.37098 * 119.99922 * 179.97438 * 12 10 9 14 14 H 1.08000 * 119.99997 * 0.02562 * 13 12 10 15 15 C 1.38947 * 119.99599 * 180.02562 * 13 12 10 16 16 N 1.31408 * 120.00072 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99765 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46969 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.46871 * 120.00263 * 17 15 13 20 20 H 1.48493 * 109.47060 * 240.00326 * 17 15 13 21 21 C 1.53001 * 109.47399 * 97.30602 * 4 3 2 22 22 C 1.53004 * 117.51569 * 347.00030 * 21 4 3 23 23 C 1.52996 * 60.00001 * 107.48034 * 22 21 4 24 24 H 1.08995 * 109.47387 * 300.00686 * 1 2 3 25 25 H 1.08997 * 109.46946 * 60.00654 * 1 2 3 26 26 H 1.09003 * 109.46894 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47387 * 239.99314 * 2 1 3 28 28 H 1.09005 * 109.46863 * 119.99708 * 2 1 3 29 29 H 0.97003 * 119.99812 * 0.02562 * 8 6 4 30 30 H 1.09008 * 109.46805 * 300.00096 * 9 8 6 31 31 H 1.08998 * 109.47123 * 59.99807 * 9 8 6 32 32 H 0.96998 * 119.99556 * 0.02562 * 12 10 9 33 33 H 0.97007 * 119.99604 * 179.97438 * 16 15 13 34 34 H 1.09003 * 115.55126 * 201.29423 * 21 4 3 35 35 H 1.09002 * 117.49133 * 214.97007 * 22 21 4 36 36 H 1.08997 * 117.50016 * 359.97438 * 22 21 4 37 37 H 1.09000 * 117.49658 * 252.50667 * 23 22 21 38 38 H 1.08997 * 117.50320 * 107.49270 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4259 1.4618 -0.1166 5 1 3.8937 0.5345 0.2142 6 6 3.9101 2.6024 0.7411 7 8 3.1107 3.3099 1.3169 8 7 5.2313 2.8363 0.8685 9 6 5.7018 3.9455 1.7019 10 6 7.2079 3.9891 1.6765 11 8 7.8274 3.1741 1.0258 12 7 7.8667 4.9343 2.3759 13 6 9.2369 4.9736 2.3532 14 1 9.7884 4.2474 1.7745 15 6 9.9159 5.9477 3.0747 16 7 9.2448 6.8309 3.7793 17 14 11.7829 6.0018 3.0432 18 1 12.2954 4.9065 2.1812 19 1 12.2311 7.3092 2.5004 20 1 12.3063 5.8329 4.4226 21 6 3.7980 1.7280 -1.5766 22 6 2.7105 1.5195 -2.6325 23 6 3.1542 2.9357 -2.2607 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 5.8705 2.2707 0.4076 30 1 5.3041 4.8841 1.3158 31 1 5.3601 3.8003 2.7267 32 1 7.3712 5.5862 2.8960 33 1 9.7190 7.5107 4.2833 34 1 4.8226 1.4797 -1.8535 35 1 3.0198 1.1340 -3.6040 36 1 1.7299 1.1921 -2.2872 37 1 2.4654 3.5403 -1.6708 38 1 3.7553 3.4820 -2.9876 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599933057.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:37 Heat of formation + Delta-G solvation = -121.139366 kcal Electronic energy + Delta-G solvation = -20569.694036 eV Core-core repulsion = 17219.166875 eV Total energy + Delta-G solvation = -3350.527161 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.37860 -40.21723 -39.02862 -37.00700 -36.24753 -35.28808 -33.38637 -32.37395 -30.29926 -28.14380 -26.21694 -23.93668 -23.18379 -22.58192 -21.40017 -21.08527 -20.08904 -18.71348 -18.03684 -17.61729 -17.29370 -16.60742 -16.55299 -16.38353 -15.86352 -15.73916 -15.43406 -15.09457 -14.72777 -14.01148 -13.70799 -13.57579 -13.55190 -13.36792 -13.11807 -12.91721 -12.44909 -12.42602 -12.31171 -12.11723 -12.09611 -11.68400 -11.58317 -11.33717 -10.79596 -10.58107 -10.43406 -10.23012 -10.09112 -8.51551 -6.01823 1.34847 1.42881 1.49335 1.56816 1.74914 1.89846 2.28802 2.71489 2.92265 3.13936 3.15666 3.59232 3.72700 3.85916 4.15797 4.18136 4.21176 4.25360 4.34617 4.39548 4.41839 4.44883 4.51841 4.78898 4.83800 4.98027 5.04716 5.17184 5.23510 5.26220 5.33681 5.38333 5.91082 6.09033 6.45406 6.52064 7.02846 7.13005 7.43463 7.93058 8.65630 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.039705 B = 0.003345 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.026823 B = 8369.036958 C = 8635.434560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.043 3.957 3 O -0.378 6.378 4 C 0.111 3.889 5 H 0.117 0.883 6 C 0.514 3.486 7 O -0.570 6.570 8 N -0.700 5.700 9 C 0.122 3.878 10 C 0.435 3.565 11 O -0.621 6.621 12 N -0.560 5.560 13 C -0.336 4.336 14 H 0.088 0.912 15 C -0.011 4.011 16 N -0.917 5.917 17 Si 0.997 3.003 18 H -0.269 1.269 19 H -0.272 1.272 20 H -0.271 1.271 21 C -0.187 4.187 22 C -0.141 4.141 23 C -0.183 4.183 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.415 0.585 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.398 0.602 33 H 0.280 0.720 34 H 0.134 0.866 35 H 0.117 0.883 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.919 -12.365 -9.386 20.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 O -0.297 6.297 4 C 0.049 3.951 5 H 0.135 0.865 6 C 0.301 3.699 7 O -0.449 6.449 8 N -0.355 5.355 9 C -0.006 4.006 10 C 0.222 3.778 11 O -0.509 6.509 12 N -0.195 5.195 13 C -0.465 4.465 14 H 0.106 0.894 15 C -0.212 4.212 16 N -0.557 5.557 17 Si 0.821 3.179 18 H -0.193 1.193 19 H -0.197 1.197 20 H -0.197 1.197 21 C -0.206 4.206 22 C -0.178 4.178 23 C -0.220 4.220 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.114 0.886 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.254 0.746 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.232 0.768 33 H 0.089 0.911 34 H 0.151 0.849 35 H 0.135 0.865 36 H 0.120 0.880 37 H 0.092 0.908 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.146 -12.070 -9.252 20.102 hybrid contribution 1.083 0.432 0.448 1.249 sum -12.063 -11.637 -8.804 18.933 Atomic orbital electron populations 1.21756 0.92713 1.03512 1.02550 1.22904 0.96529 0.82293 1.01509 1.88009 1.18760 1.28629 1.94262 1.21271 0.83869 0.96777 0.93160 0.86548 1.20999 0.81538 0.86198 0.81162 1.90677 1.55232 1.50187 1.48788 1.45577 1.07146 1.32865 1.49934 1.20766 0.90867 0.91851 0.97142 1.20342 0.89712 0.83867 0.83891 1.90468 1.69708 1.43094 1.47659 1.41859 1.07113 1.27917 1.42636 1.19783 0.82136 1.15017 1.29560 0.89442 1.26144 1.05313 0.94641 0.95100 1.69691 1.38416 1.17272 1.30330 0.84803 0.76338 0.78420 0.78377 1.19294 1.19696 1.19668 1.22783 1.00295 1.06050 0.91428 1.23004 0.98502 0.97817 0.98481 1.22864 1.03823 0.91801 1.03551 0.93161 0.91938 0.88594 0.90841 0.92744 0.74620 0.89086 0.88910 0.76763 0.91082 0.84869 0.86498 0.88001 0.90810 0.87998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 10.28 71.98 0.74 -1.39 16 2 C 0.04 0.73 5.63 71.98 0.40 1.13 16 3 O -0.38 -9.52 8.24 -129.99 -1.07 -10.59 16 4 C 0.11 2.65 2.97 29.85 0.09 2.74 16 5 H 0.12 2.16 7.74 -2.39 -0.02 2.14 16 6 C 0.51 16.68 6.94 87.66 0.61 17.29 16 7 O -0.57 -23.04 16.51 15.95 0.26 -22.78 16 8 N -0.70 -22.98 5.49 -466.78 -2.56 -25.54 16 9 C 0.12 4.50 6.15 85.63 0.53 5.02 16 10 C 0.43 19.95 7.85 87.66 0.69 20.64 16 11 O -0.62 -31.54 15.24 -3.07 -0.05 -31.59 16 12 N -0.56 -28.08 5.29 -306.98 -1.62 -29.70 16 13 C -0.34 -18.40 9.68 84.04 0.81 -17.59 16 14 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 15 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 16 N -0.92 -48.76 13.05 21.66 0.28 -48.48 16 17 Si 1.00 41.55 29.55 68.60 2.03 43.58 16 18 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 19 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 20 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 21 C -0.19 -3.82 5.76 -10.79 -0.06 -3.88 16 22 C -0.14 -2.40 9.56 30.59 0.29 -2.11 16 23 C -0.18 -4.14 9.86 30.59 0.30 -3.83 16 24 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 0.92 7.55 -2.39 -0.02 0.90 16 28 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.42 12.98 7.44 -92.71 -0.69 12.29 16 30 H 0.09 3.28 8.14 -2.38 -0.02 3.26 16 31 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 32 H 0.40 19.30 7.90 -92.71 -0.73 18.57 16 33 H 0.28 13.87 8.31 -92.70 -0.77 13.10 16 34 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.10 1.75 6.22 -2.39 -0.01 1.73 16 37 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -68.19 328.60 1.80 -66.39 By element: Atomic # 1 Polarization: 41.16 SS G_CDS: -0.34 Total: 40.82 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: 4.87 Total: 17.89 kcal Atomic # 7 Polarization: -99.82 SS G_CDS: -3.90 Total: -103.72 kcal Atomic # 8 Polarization: -64.11 SS G_CDS: -0.85 Total: -64.96 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -68.19 1.80 -66.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599933057.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.751 kcal (2) G-P(sol) polarization free energy of solvation -68.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds