Wall clock time and date at job start Mon Mar 30 2020 00:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42892 * 109.47615 * 2 1 4 4 C 1.42902 * 114.00391 * 175.58763 * 3 2 1 5 5 H 1.09003 * 109.46866 * 23.24525 * 4 3 2 6 6 C 1.50692 * 109.47508 * 143.24840 * 4 3 2 7 7 O 1.21279 * 120.00122 * 4.99709 * 6 4 3 8 8 N 1.34773 * 120.00029 * 185.00095 * 6 4 3 9 9 C 1.46505 * 120.00250 * 179.97438 * 8 6 4 10 10 C 1.50696 * 109.47471 * 179.97438 * 9 8 6 11 11 O 1.21295 * 120.00029 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00012 * 179.97438 * 10 9 8 13 13 C 1.37101 * 119.99755 * 180.02562 * 12 10 9 14 14 H 1.08004 * 120.00250 * 359.97438 * 13 12 10 15 15 C 1.38951 * 119.99866 * 180.02562 * 13 12 10 16 16 N 1.31412 * 120.00176 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00098 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47224 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47440 * 119.99948 * 17 15 13 20 20 H 1.48506 * 109.47386 * 240.00047 * 17 15 13 21 21 C 1.53006 * 109.46960 * 263.25055 * 4 3 2 22 22 C 1.53002 * 117.49708 * 302.90512 * 21 4 3 23 23 C 1.53006 * 60.03236 * 107.47886 * 22 21 4 24 24 H 1.09004 * 109.46888 * 300.00680 * 1 2 3 25 25 H 1.09001 * 109.47051 * 59.99678 * 1 2 3 26 26 H 1.08992 * 109.47663 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46888 * 239.99320 * 2 1 3 28 28 H 1.09001 * 109.47051 * 120.00322 * 2 1 3 29 29 H 0.97006 * 120.00475 * 359.97438 * 8 6 4 30 30 H 1.08999 * 109.46961 * 300.00208 * 9 8 6 31 31 H 1.08999 * 109.46970 * 59.99778 * 9 8 6 32 32 H 0.96995 * 120.00064 * 359.97438 * 12 10 9 33 33 H 0.96999 * 120.00304 * 180.02562 * 16 15 13 34 34 H 1.09000 * 115.55068 * 157.23816 * 21 4 3 35 35 H 1.08995 * 117.49907 * 214.98306 * 22 21 4 36 36 H 1.08998 * 117.49924 * 359.97438 * 22 21 4 37 37 H 1.08995 * 117.49700 * 107.49889 * 23 22 21 38 38 H 1.08998 * 117.49568 * 252.52277 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4273 1.4613 0.1004 5 1 3.8915 0.5389 -0.2489 6 6 3.9000 2.6139 -0.7474 7 8 3.0932 3.3285 -1.3034 8 7 5.2193 2.8505 -0.8879 9 6 5.6789 3.9708 -1.7127 10 6 7.1851 4.0161 -1.7042 11 8 7.8131 3.1933 -1.0719 12 7 7.8345 4.9703 -2.4001 13 6 9.2049 5.0112 -2.3928 14 1 9.7640 4.2790 -1.8291 15 6 9.8744 5.9952 -3.1098 16 7 9.1941 6.8864 -3.7954 17 14 11.7415 6.0514 -3.0993 18 1 12.2653 4.9460 -2.2572 19 1 12.2491 5.9007 -4.4867 20 1 12.1945 7.3526 -2.5451 21 6 3.8173 1.7077 1.5593 22 6 3.2079 2.9251 2.2575 23 6 2.7327 1.5173 2.6226 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5140 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.8647 2.2791 -0.4430 30 1 5.3247 3.8385 -2.7350 31 1 5.2854 4.9040 -1.3098 32 1 7.3324 5.6276 -2.9067 33 1 9.6615 7.5731 -4.2962 34 1 4.8379 1.4332 1.8259 35 1 3.8275 3.4513 2.9836 36 1 2.5295 3.5507 1.6774 37 1 3.0396 1.1174 3.5889 38 1 1.7418 1.2166 2.2823 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599933059.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:40 Heat of formation + Delta-G solvation = -98.943610 kcal Electronic energy + Delta-G solvation = -20571.554202 eV Core-core repulsion = 17221.989521 eV Total energy + Delta-G solvation = -3349.564681 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.15913 -38.59553 -37.69150 -36.14259 -34.43358 -33.64964 -31.61817 -31.38296 -29.01146 -26.71389 -24.39818 -23.18286 -22.35953 -21.51667 -19.90834 -19.59483 -18.16518 -17.37384 -16.97736 -16.63642 -15.61686 -15.14077 -15.11358 -15.04266 -14.62985 -14.29836 -14.00004 -13.60840 -13.42470 -12.78030 -12.64672 -12.42203 -12.19889 -11.95969 -11.64747 -11.58794 -11.45705 -11.32863 -11.15007 -10.68037 -10.49618 -10.41788 -10.33177 -9.89379 -9.65805 -9.30676 -8.78718 -8.64437 -8.11248 -6.52488 -3.94569 2.77006 2.93377 3.09499 3.21867 3.28509 3.58012 3.72957 3.94871 4.12475 4.48618 4.73683 4.76507 4.86495 4.87341 4.97688 5.13912 5.15615 5.16491 5.19861 5.25118 5.46930 5.58403 5.69859 5.80537 5.89901 5.90807 5.96086 6.04326 6.06492 6.14333 6.66346 6.95471 7.45210 7.81177 7.91181 8.42531 8.46998 9.03585 9.38291 9.85958 10.64464 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.039704 B = 0.003347 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.041390 B = 8363.019059 C = 8628.232015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.353 6.353 4 C 0.106 3.894 5 H 0.091 0.909 6 C 0.516 3.484 7 O -0.530 6.530 8 N -0.703 5.703 9 C 0.110 3.890 10 C 0.429 3.571 11 O -0.598 6.598 12 N -0.549 5.549 13 C -0.305 4.305 14 H 0.106 0.894 15 C 0.025 3.975 16 N -0.894 5.894 17 Si 0.932 3.068 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.184 4.184 22 C -0.164 4.164 23 C -0.166 4.166 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.410 0.590 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.396 0.604 33 H 0.274 0.726 34 H 0.120 0.880 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.911 -11.175 8.530 19.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.271 6.271 4 C 0.044 3.956 5 H 0.109 0.891 6 C 0.300 3.700 7 O -0.406 6.406 8 N -0.359 5.359 9 C -0.017 4.017 10 C 0.214 3.786 11 O -0.484 6.484 12 N -0.184 5.184 13 C -0.434 4.434 14 H 0.124 0.876 15 C -0.177 4.177 16 N -0.534 5.534 17 Si 0.759 3.241 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.203 4.203 22 C -0.201 4.201 23 C -0.203 4.203 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.248 0.752 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.230 0.770 33 H 0.084 0.916 34 H 0.137 0.863 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.122 -10.863 8.395 18.991 hybrid contribution 1.200 0.061 -0.194 1.217 sum -11.922 -10.802 8.201 18.058 Atomic orbital electron populations 1.21726 0.93520 1.02117 1.03356 1.22635 0.95814 0.83766 1.00277 1.88022 1.18619 1.26189 1.94240 1.21282 0.83510 0.97615 0.93164 0.89147 1.20220 0.82402 0.85948 0.81443 1.90699 1.53825 1.48455 1.47592 1.45584 1.06677 1.32567 1.51036 1.20949 0.94281 0.90316 0.96173 1.19729 0.88174 0.85200 0.85451 1.90492 1.67983 1.42133 1.47827 1.41804 1.07547 1.26559 1.42468 1.19779 0.81004 1.13667 1.28951 0.87617 1.25332 1.00975 0.95422 0.96018 1.69622 1.36689 1.16337 1.30791 0.85758 0.81826 0.78368 0.78135 1.19129 1.20607 1.20607 1.22738 0.99283 1.06201 0.92030 1.22912 1.03367 0.90933 1.02899 1.22947 0.98962 1.00260 0.98094 0.91866 0.91622 0.91110 0.93224 0.92941 0.75190 0.89834 0.89807 0.77021 0.91622 0.86255 0.88654 0.88186 0.88873 0.88004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.28 37.16 0.38 -0.82 16 2 C 0.05 0.49 5.64 37.16 0.21 0.70 16 3 O -0.35 -4.65 8.22 -55.09 -0.45 -5.10 16 4 C 0.11 1.35 2.97 -27.88 -0.08 1.27 16 5 H 0.09 0.95 7.74 -51.93 -0.40 0.55 16 6 C 0.52 8.49 6.90 -10.99 -0.08 8.41 16 7 O -0.53 -10.62 16.51 -14.30 -0.24 -10.86 16 8 N -0.70 -11.76 5.49 -61.48 -0.34 -12.10 16 9 C 0.11 2.05 6.15 -5.19 -0.03 2.02 16 10 C 0.43 9.79 7.85 -10.99 -0.09 9.70 16 11 O -0.60 -15.12 15.24 5.54 0.08 -15.04 16 12 N -0.55 -13.59 5.29 -10.96 -0.06 -13.64 16 13 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 14 H 0.11 2.98 7.16 -52.48 -0.38 2.61 16 15 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 16 N -0.89 -23.86 13.05 55.50 0.72 -23.14 16 17 Si 0.93 20.46 29.55 -169.99 -5.02 15.43 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 C -0.18 -2.06 5.78 -90.57 -0.52 -2.58 16 22 C -0.16 -1.93 9.85 -26.73 -0.26 -2.19 16 23 C -0.17 -1.62 9.54 -26.69 -0.25 -1.87 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.41 7.57 -51.93 -0.39 0.02 16 29 H 0.41 6.61 7.44 -40.82 -0.30 6.31 16 30 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 31 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.40 9.45 7.90 -40.82 -0.32 9.13 16 33 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 34 H 0.12 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.10 1.01 6.25 -51.93 -0.32 0.68 16 LS Contribution 328.61 15.07 4.95 4.95 Total: -1.00 -31.73 328.61 -6.80 -38.52 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -5.48 Total: 14.16 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -0.97 Total: 6.80 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.33 Total: -48.88 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.60 Total: -31.00 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.73 -6.80 -38.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599933059.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.419 kcal (2) G-P(sol) polarization free energy of solvation -31.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds