Wall clock time and date at job start Mon Mar 30 2020 00:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42892 * 109.47615 * 2 1 4 4 C 1.42902 * 114.00391 * 175.58763 * 3 2 1 5 5 H 1.09003 * 109.46866 * 23.24525 * 4 3 2 6 6 C 1.50692 * 109.47508 * 143.24840 * 4 3 2 7 7 O 1.21279 * 120.00122 * 4.99709 * 6 4 3 8 8 N 1.34773 * 120.00029 * 185.00095 * 6 4 3 9 9 C 1.46505 * 120.00250 * 179.97438 * 8 6 4 10 10 C 1.50696 * 109.47471 * 179.97438 * 9 8 6 11 11 O 1.21295 * 120.00029 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00012 * 179.97438 * 10 9 8 13 13 C 1.37101 * 119.99755 * 180.02562 * 12 10 9 14 14 H 1.08004 * 120.00250 * 359.97438 * 13 12 10 15 15 C 1.38951 * 119.99866 * 180.02562 * 13 12 10 16 16 N 1.31412 * 120.00176 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00098 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47224 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47440 * 119.99948 * 17 15 13 20 20 H 1.48506 * 109.47386 * 240.00047 * 17 15 13 21 21 C 1.53006 * 109.46960 * 263.25055 * 4 3 2 22 22 C 1.53002 * 117.49708 * 302.90512 * 21 4 3 23 23 C 1.53006 * 60.03236 * 107.47886 * 22 21 4 24 24 H 1.09004 * 109.46888 * 300.00680 * 1 2 3 25 25 H 1.09001 * 109.47051 * 59.99678 * 1 2 3 26 26 H 1.08992 * 109.47663 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46888 * 239.99320 * 2 1 3 28 28 H 1.09001 * 109.47051 * 120.00322 * 2 1 3 29 29 H 0.97006 * 120.00475 * 359.97438 * 8 6 4 30 30 H 1.08999 * 109.46961 * 300.00208 * 9 8 6 31 31 H 1.08999 * 109.46970 * 59.99778 * 9 8 6 32 32 H 0.96995 * 120.00064 * 359.97438 * 12 10 9 33 33 H 0.96999 * 120.00304 * 180.02562 * 16 15 13 34 34 H 1.09000 * 115.55068 * 157.23816 * 21 4 3 35 35 H 1.08995 * 117.49907 * 214.98306 * 22 21 4 36 36 H 1.08998 * 117.49924 * 359.97438 * 22 21 4 37 37 H 1.08995 * 117.49700 * 107.49889 * 23 22 21 38 38 H 1.08998 * 117.49568 * 252.52277 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4273 1.4613 0.1004 5 1 3.8915 0.5389 -0.2489 6 6 3.9000 2.6139 -0.7474 7 8 3.0932 3.3285 -1.3034 8 7 5.2193 2.8505 -0.8879 9 6 5.6789 3.9708 -1.7127 10 6 7.1851 4.0161 -1.7042 11 8 7.8131 3.1933 -1.0719 12 7 7.8345 4.9703 -2.4001 13 6 9.2049 5.0112 -2.3928 14 1 9.7640 4.2790 -1.8291 15 6 9.8744 5.9952 -3.1098 16 7 9.1941 6.8864 -3.7954 17 14 11.7415 6.0514 -3.0993 18 1 12.2653 4.9460 -2.2572 19 1 12.2491 5.9007 -4.4867 20 1 12.1945 7.3526 -2.5451 21 6 3.8173 1.7077 1.5593 22 6 3.2079 2.9251 2.2575 23 6 2.7327 1.5173 2.6226 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5140 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.8647 2.2791 -0.4430 30 1 5.3247 3.8385 -2.7350 31 1 5.2854 4.9040 -1.3098 32 1 7.3324 5.6276 -2.9067 33 1 9.6615 7.5731 -4.2962 34 1 4.8379 1.4332 1.8259 35 1 3.8275 3.4513 2.9836 36 1 2.5295 3.5507 1.6774 37 1 3.0396 1.1174 3.5889 38 1 1.7418 1.2166 2.2823 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599933059.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:40 Heat of formation + Delta-G solvation = -121.064588 kcal Electronic energy + Delta-G solvation = -20572.513440 eV Core-core repulsion = 17221.989521 eV Total energy + Delta-G solvation = -3350.523918 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.38024 -40.21666 -39.02485 -37.00574 -36.24717 -35.28779 -33.38649 -32.37138 -30.29767 -28.14401 -26.21779 -23.93542 -23.18807 -22.58367 -21.39999 -21.08111 -20.08871 -18.70342 -18.04338 -17.62373 -17.29191 -16.60543 -16.55338 -16.38460 -15.86533 -15.73889 -15.43292 -15.09510 -14.72631 -14.01155 -13.70876 -13.56916 -13.54832 -13.37115 -13.12279 -12.91703 -12.44903 -12.42664 -12.31057 -12.11739 -12.09574 -11.67808 -11.58275 -11.33606 -10.79529 -10.58088 -10.43724 -10.22972 -10.09095 -8.51534 -6.01829 1.34832 1.42895 1.49455 1.56796 1.74800 1.89874 2.28807 2.70723 2.92763 3.14096 3.15655 3.59163 3.72863 3.85866 4.15823 4.18012 4.21412 4.25268 4.34646 4.39625 4.41830 4.44824 4.52043 4.78886 4.83862 4.98020 5.04786 5.17023 5.23509 5.26201 5.33659 5.38332 5.91098 6.09170 6.45398 6.52111 7.02846 7.13021 7.43482 7.93069 8.65661 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.039704 B = 0.003347 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.041390 B = 8363.019059 C = 8628.232015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.044 3.956 3 O -0.378 6.378 4 C 0.110 3.890 5 H 0.117 0.883 6 C 0.515 3.485 7 O -0.570 6.570 8 N -0.700 5.700 9 C 0.122 3.878 10 C 0.435 3.565 11 O -0.621 6.621 12 N -0.560 5.560 13 C -0.336 4.336 14 H 0.088 0.912 15 C -0.011 4.011 16 N -0.917 5.917 17 Si 0.997 3.003 18 H -0.269 1.269 19 H -0.271 1.271 20 H -0.272 1.272 21 C -0.187 4.187 22 C -0.184 4.184 23 C -0.141 4.141 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.095 0.905 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.415 0.585 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.398 0.602 33 H 0.280 0.720 34 H 0.134 0.866 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.117 0.883 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.791 -12.487 9.383 20.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 O -0.297 6.297 4 C 0.049 3.951 5 H 0.135 0.865 6 C 0.301 3.699 7 O -0.449 6.449 8 N -0.355 5.355 9 C -0.006 4.006 10 C 0.222 3.778 11 O -0.509 6.509 12 N -0.195 5.195 13 C -0.465 4.465 14 H 0.106 0.894 15 C -0.212 4.212 16 N -0.557 5.557 17 Si 0.821 3.179 18 H -0.193 1.193 19 H -0.197 1.197 20 H -0.197 1.197 21 C -0.205 4.205 22 C -0.221 4.221 23 C -0.178 4.178 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.114 0.886 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.254 0.746 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.232 0.768 33 H 0.089 0.911 34 H 0.152 0.848 35 H 0.120 0.880 36 H 0.091 0.909 37 H 0.135 0.865 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.020 -12.190 9.255 20.094 hybrid contribution 1.077 0.440 -0.452 1.248 sum -11.942 -11.749 8.803 18.925 Atomic orbital electron populations 1.21755 0.92726 1.03509 1.02543 1.22899 0.96512 0.82290 1.01516 1.88007 1.18644 1.28631 1.94392 1.21276 0.83843 0.96651 0.93326 0.86548 1.20983 0.81552 0.86407 0.80927 1.90676 1.54654 1.50196 1.49360 1.45574 1.07169 1.32017 1.50750 1.20765 0.90960 0.91604 0.97295 1.20339 0.89759 0.83876 0.83835 1.90469 1.69210 1.42795 1.48458 1.41857 1.07132 1.27294 1.43238 1.19785 0.82138 1.14348 1.30222 0.89441 1.26144 1.05311 0.94613 0.95132 1.69689 1.38386 1.16652 1.30989 0.84804 0.76339 0.78422 0.78372 1.19295 1.19667 1.19698 1.22803 1.00509 1.05901 0.91332 1.22868 1.03916 0.91739 1.03554 1.23015 0.98413 0.97935 0.98433 0.91961 0.93158 0.88590 0.92719 0.90861 0.74620 0.88901 0.89099 0.76763 0.91080 0.84813 0.87982 0.90873 0.86481 0.88020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 10.28 71.98 0.74 -1.40 16 2 C 0.04 0.73 5.64 71.98 0.41 1.14 16 3 O -0.38 -9.53 8.22 -129.99 -1.07 -10.60 16 4 C 0.11 2.64 2.97 29.85 0.09 2.73 16 5 H 0.12 2.15 7.74 -2.39 -0.02 2.14 16 6 C 0.51 16.69 6.90 87.66 0.60 17.29 16 7 O -0.57 -23.04 16.51 15.96 0.26 -22.78 16 8 N -0.70 -22.98 5.49 -466.80 -2.56 -25.54 16 9 C 0.12 4.50 6.15 85.63 0.53 5.03 16 10 C 0.43 19.95 7.85 87.66 0.69 20.64 16 11 O -0.62 -31.54 15.24 -3.08 -0.05 -31.59 16 12 N -0.56 -28.07 5.29 -306.98 -1.62 -29.70 16 13 C -0.34 -18.40 9.68 84.04 0.81 -17.58 16 14 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 15 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 16 N -0.92 -48.76 13.05 21.66 0.28 -48.48 16 17 Si 1.00 41.55 29.55 68.60 2.03 43.58 16 18 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 19 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 20 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 21 C -0.19 -3.81 5.78 -10.76 -0.06 -3.87 16 22 C -0.18 -4.16 9.85 30.60 0.30 -3.86 16 23 C -0.14 -2.41 9.54 30.62 0.29 -2.12 16 24 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 0.92 7.57 -2.39 -0.02 0.90 16 29 H 0.42 12.98 7.44 -92.70 -0.69 12.30 16 30 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 31 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 32 H 0.40 19.30 7.90 -92.71 -0.73 18.57 16 33 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 34 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.10 1.77 6.25 -2.39 -0.01 1.75 16 Total: -1.00 -68.19 328.61 1.80 -66.39 By element: Atomic # 1 Polarization: 41.18 SS G_CDS: -0.34 Total: 40.84 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 4.87 Total: 17.87 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -3.90 Total: -103.72 kcal Atomic # 8 Polarization: -64.11 SS G_CDS: -0.85 Total: -64.96 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -68.19 1.80 -66.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599933059.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.674 kcal (2) G-P(sol) polarization free energy of solvation -68.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds