Wall clock time and date at job start Mon Mar 30 2020 01:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34232 * 117.00262 * 2 1 4 4 O 1.20825 * 119.99512 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00045 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.47200 * 179.97438 * 5 3 2 7 7 C 1.37098 * 119.99938 * 263.89971 * 6 5 3 8 8 H 1.07995 * 120.00389 * 198.93025 * 7 6 5 9 9 C 1.38959 * 119.99877 * 18.93256 * 7 6 5 10 10 N 1.31413 * 119.99658 * 19.63478 * 9 7 6 11 11 Si 1.86794 * 120.00083 * 199.62821 * 9 7 6 12 12 H 1.48507 * 109.46966 * 89.99943 * 11 9 7 13 13 H 1.48495 * 109.47449 * 209.99972 * 11 9 7 14 14 H 1.48504 * 109.47282 * 330.00498 * 11 9 7 15 15 C 1.34773 * 120.00420 * 83.90043 * 6 5 3 16 16 O 1.21298 * 119.99539 * 0.02562 * 15 6 5 17 17 C 1.50697 * 120.00458 * 180.02562 * 15 6 5 18 18 H 1.08999 * 110.64107 * 300.69974 * 17 15 6 19 19 C 1.54594 * 110.72548 * 177.55098 * 17 15 6 20 20 C 1.53993 * 105.13786 * 219.50493 * 19 17 15 21 21 N 1.47900 * 107.06017 * 358.77607 * 20 19 17 22 22 C 1.46901 * 111.00311 * 145.84442 * 21 20 19 23 23 C 1.48535 * 105.81937 * 25.32900 * 21 20 19 24 24 H 1.08992 * 109.47396 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46907 * 300.00865 * 1 2 3 26 26 H 1.09007 * 109.46817 * 59.99882 * 1 2 3 27 27 H 1.09001 * 109.47528 * 59.99776 * 5 3 2 28 28 H 1.09002 * 109.47194 * 299.99759 * 5 3 2 29 29 H 0.97002 * 119.99712 * 180.02562 * 10 9 7 30 30 H 1.08997 * 110.30786 * 338.41778 * 19 17 15 31 31 H 1.08998 * 110.31258 * 100.58842 * 19 17 15 32 32 H 1.08999 * 109.91883 * 118.12442 * 20 19 17 33 33 H 1.08997 * 109.91823 * 239.22358 * 20 19 17 34 34 H 1.09000 * 109.46972 * 60.12090 * 22 21 20 35 35 H 1.08998 * 109.46722 * 180.12677 * 22 21 20 36 36 H 1.09003 * 109.46931 * 300.12238 * 22 21 20 37 37 H 1.09002 * 110.66322 * 202.36144 * 23 21 20 38 38 H 1.08997 * 110.66943 * 79.23250 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.2977 3.3004 -1.1810 8 1 4.8834 4.2077 -1.1743 9 6 3.8642 2.7622 -2.3866 10 7 2.8601 1.9146 -2.4043 11 14 4.7084 3.2438 -3.9817 12 1 5.8285 2.3067 -4.2515 13 1 3.7308 3.1810 -5.0978 14 1 5.2373 4.6265 -3.8641 15 6 4.0535 3.3619 1.1599 16 8 3.7745 2.8125 2.2048 17 6 4.4803 4.8071 1.1591 18 1 5.4787 4.9127 0.7347 19 6 4.4288 5.3936 2.5886 20 6 3.8804 6.8223 2.4176 21 7 3.6666 7.0346 0.9696 22 6 2.4993 7.8937 0.7301 23 6 3.4612 5.6833 0.3882 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 3.9565 0.7805 -0.8891 28 1 3.9557 0.7809 0.8909 29 1 2.5577 1.5386 -3.2458 30 1 3.7598 4.8041 3.2155 31 1 5.4284 5.4214 3.0224 32 1 2.9354 6.9237 2.9512 33 1 4.6015 7.5451 2.7993 34 1 2.6578 8.8625 1.2039 35 1 2.3637 8.0316 -0.3426 36 1 1.6102 7.4244 1.1514 37 1 3.6851 5.6854 -0.6785 38 1 2.4432 5.3378 0.5680 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609991755.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:34 Heat of formation + Delta-G solvation = -119.483828 kcal Electronic energy + Delta-G solvation = -22309.860613 eV Core-core repulsion = 18959.405242 eV Total energy + Delta-G solvation = -3350.455371 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.49407 -40.62123 -38.95380 -37.27666 -36.54338 -33.51248 -33.17596 -30.84862 -29.48149 -27.81805 -27.00165 -26.27194 -23.19221 -22.11579 -21.62096 -20.82211 -18.85722 -18.53227 -18.24039 -17.33141 -17.07801 -16.66817 -16.45087 -16.06480 -15.63524 -15.48316 -14.87848 -14.56975 -14.30831 -14.17100 -14.01716 -13.72395 -13.37636 -13.09510 -12.89002 -12.60317 -12.58954 -12.41055 -12.28113 -12.18009 -12.10480 -11.97775 -11.58775 -11.55975 -11.47089 -10.93537 -10.50895 -9.87542 -9.45363 -8.36820 -5.93339 1.41877 1.51172 1.61042 1.67861 1.78645 2.22285 2.34274 2.76879 3.04577 3.27945 3.71863 3.79512 4.09403 4.23586 4.30555 4.33014 4.38895 4.39679 4.46556 4.54201 4.56957 4.64042 4.67379 4.74021 4.83404 4.94578 4.98598 4.99512 5.19519 5.28198 5.47506 5.62646 5.72855 5.83451 6.06357 6.33819 7.07588 7.20860 7.46630 7.87045 8.70595 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.014519 B = 0.008602 C = 0.006519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.054638 B = 3254.365216 C = 4293.856551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.378 6.378 3 C 0.487 3.513 4 O -0.536 6.536 5 C 0.153 3.847 6 N -0.436 5.436 7 C -0.345 4.345 8 H 0.117 0.883 9 C -0.001 4.001 10 N -0.896 5.896 11 Si 0.991 3.009 12 H -0.269 1.269 13 H -0.293 1.293 14 H -0.258 1.258 15 C 0.465 3.535 16 O -0.631 6.631 17 C -0.088 4.088 18 H 0.109 0.891 19 C -0.114 4.114 20 C 0.040 3.960 21 N -0.525 5.525 22 C 0.016 3.984 23 C 0.070 3.930 24 H 0.135 0.865 25 H 0.048 0.952 26 H 0.045 0.955 27 H 0.121 0.879 28 H 0.089 0.911 29 H 0.271 0.729 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.016 0.984 37 H 0.088 0.912 38 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.150 3.661 2.165 4.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.295 6.295 3 C 0.330 3.670 4 O -0.424 6.424 5 C 0.027 3.973 6 N -0.153 5.153 7 C -0.472 4.472 8 H 0.135 0.865 9 C -0.203 4.203 10 N -0.535 5.535 11 Si 0.815 3.185 12 H -0.194 1.194 13 H -0.219 1.219 14 H -0.182 1.182 15 C 0.255 3.745 16 O -0.519 6.519 17 C -0.110 4.110 18 H 0.127 0.873 19 C -0.152 4.152 20 C -0.088 4.088 21 N -0.249 5.249 22 C -0.133 4.133 23 C -0.058 4.058 24 H 0.153 0.847 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.139 0.861 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.061 0.939 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.035 0.965 37 H 0.106 0.894 38 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 1.109 3.854 2.271 4.609 hybrid contribution -1.186 -0.520 -0.676 1.461 sum -0.077 3.334 1.595 3.697 Atomic orbital electron populations 1.23278 0.76244 1.04844 1.01091 1.86423 1.24076 1.33875 1.85089 1.24059 0.92629 0.80768 0.69591 1.90475 1.67309 1.37675 1.46919 1.20510 0.87118 0.85993 1.03664 1.43610 1.56761 1.08209 1.06721 1.20012 1.32844 1.12091 0.82241 0.86520 1.26053 0.94829 0.96971 1.02472 1.69924 1.22975 1.32106 1.28477 0.84946 0.77649 0.79473 0.76459 1.19410 1.21886 1.18190 1.20724 0.81287 0.89359 0.83124 1.90481 1.56965 1.71344 1.33075 1.21834 1.00977 0.90121 0.98019 0.87349 1.22319 1.02816 0.95118 0.94979 1.22943 1.00639 0.96628 0.88573 1.64851 1.38096 1.10693 1.11287 1.22568 0.90236 0.97881 1.02567 1.22888 0.95495 0.87509 0.99883 0.84745 0.93272 0.93642 0.86110 0.89322 0.91949 0.92373 0.89060 0.93883 0.87706 0.88877 0.91102 0.96485 0.89365 0.97021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.34 10.56 113.37 1.20 2.54 16 2 O -0.38 -16.41 10.57 -51.44 -0.54 -16.95 16 3 C 0.49 24.63 6.09 71.23 0.43 25.06 16 4 O -0.54 -30.54 15.68 21.97 0.34 -30.20 16 5 C 0.15 7.44 5.13 85.63 0.44 7.88 16 6 N -0.44 -21.79 2.18 -639.61 -1.39 -23.18 16 7 C -0.35 -16.72 7.95 84.04 0.67 -16.05 16 8 H 0.12 5.30 5.61 -2.91 -0.02 5.28 16 9 C 0.00 -0.06 4.90 84.93 0.42 0.35 16 10 N -0.90 -46.03 9.18 21.67 0.20 -45.83 16 11 Si 0.99 38.36 29.60 68.60 2.03 40.39 16 12 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 13 H -0.29 -11.64 7.11 99.48 0.71 -10.93 16 14 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 15 C 0.46 22.80 6.82 87.66 0.60 23.39 16 16 O -0.63 -33.82 15.14 -3.09 -0.05 -33.87 16 17 C -0.09 -3.54 2.48 -10.34 -0.03 -3.57 16 18 H 0.11 4.06 7.67 -2.39 -0.02 4.04 16 19 C -0.11 -3.94 6.31 31.47 0.20 -3.74 16 20 C 0.04 1.17 6.70 86.45 0.58 1.75 16 21 N -0.53 -17.08 5.55 -909.17 -5.05 -22.12 16 22 C 0.02 0.44 9.40 127.69 1.20 1.64 16 23 C 0.07 2.83 5.17 86.65 0.45 3.28 16 24 H 0.13 3.25 8.14 -2.39 -0.02 3.23 16 25 H 0.05 1.68 8.13 -2.39 -0.02 1.66 16 26 H 0.04 1.65 8.13 -2.38 -0.02 1.63 16 27 H 0.12 5.80 6.47 -2.39 -0.02 5.78 16 28 H 0.09 4.07 7.61 -2.39 -0.02 4.05 16 29 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 30 H 0.06 2.31 6.89 -2.39 -0.02 2.29 16 31 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.04 1.23 7.73 -2.39 -0.02 1.22 16 33 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.02 0.49 8.00 -2.39 -0.02 0.47 16 37 H 0.09 3.69 6.52 -2.39 -0.02 3.68 16 38 H 0.01 0.54 7.87 -2.39 -0.02 0.52 16 Total: -1.00 -65.62 310.39 2.75 -62.86 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 1.06 Total: 26.37 kcal Atomic # 6 Polarization: 36.38 SS G_CDS: 6.15 Total: 42.53 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -6.24 Total: -91.14 kcal Atomic # 8 Polarization: -80.77 SS G_CDS: -0.25 Total: -81.02 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Total: -65.62 2.75 -62.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609991755.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.619 kcal (2) G-P(sol) polarization free energy of solvation -65.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds