Wall clock time and date at job start Mon Mar 30 2020 01:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39659 * 120.27670 * 313.99979 * 3 2 1 5 5 C 1.37619 * 119.60810 * 179.82811 * 4 3 2 6 6 C 1.39080 * 120.76545 * 0.16202 * 5 4 3 7 7 C 1.37832 * 119.91825 * 359.92925 * 6 5 4 8 8 C 1.38646 * 119.82342 * 0.22076 * 7 6 5 9 9 C 1.50664 * 122.56009 * 180.40103 * 7 6 5 10 10 C 1.52723 * 110.59605 * 342.28972 * 9 7 6 11 11 C 1.53326 * 108.36937 * 51.12309 * 10 9 7 12 12 C 1.50694 * 117.59174 * 179.71336 * 6 5 4 13 13 H 1.09006 * 109.24662 * 282.75583 * 12 6 5 14 14 N 1.46897 * 109.25121 * 42.17906 * 12 6 5 15 15 C 1.46898 * 110.99841 * 205.93004 * 14 12 6 16 16 C 1.53003 * 109.47322 * 185.13436 * 15 14 12 17 17 C 1.50699 * 109.47386 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99654 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99724 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00602 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99566 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47232 * 60.00185 * 21 19 17 23 23 H 1.48499 * 109.46963 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47492 * 299.99705 * 21 19 17 25 25 H 1.08002 * 120.20017 * 0.10552 * 4 3 2 26 26 H 1.08007 * 119.61708 * 180.18298 * 5 4 3 27 27 H 1.08005 * 119.78134 * 179.81451 * 8 7 6 28 28 H 1.09001 * 109.24955 * 222.00687 * 9 7 6 29 29 H 1.08993 * 109.22018 * 102.55884 * 9 7 6 30 30 H 1.09001 * 109.68959 * 291.39841 * 10 9 7 31 31 H 1.09004 * 109.71318 * 170.85145 * 10 9 7 32 32 H 1.08998 * 109.68910 * 170.32253 * 11 10 9 33 33 H 1.08998 * 109.68979 * 49.76043 * 11 10 9 34 34 H 1.00899 * 110.99752 * 329.88599 * 14 12 6 35 35 H 1.08996 * 109.47492 * 305.13769 * 15 14 12 36 36 H 1.09000 * 109.47168 * 65.13698 * 15 14 12 37 37 H 1.09006 * 109.47151 * 300.00517 * 16 15 14 38 38 H 1.09000 * 109.46785 * 60.00028 * 16 15 14 39 39 H 0.96993 * 120.00165 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2725 -0.8369 0.8676 5 6 4.6486 -0.8277 0.8536 6 6 5.3457 0.0083 -0.0122 7 6 4.6565 0.8387 -0.8697 8 6 3.2700 0.8403 -0.8621 9 6 5.3507 1.7612 -1.8377 10 6 6.8100 1.9629 -1.4351 11 6 7.4481 0.5846 -1.2249 12 6 6.8512 -0.0349 0.0370 13 1 7.1983 0.5202 0.9086 14 7 7.2923 -1.4318 0.1462 15 6 8.6079 -1.5192 0.7939 16 6 9.0903 -2.9711 0.7747 17 6 10.4396 -3.0609 1.4398 18 1 10.9065 -2.1714 1.8362 19 6 11.0784 -4.2786 1.5413 20 7 10.5105 -5.3615 1.0573 21 14 12.7512 -4.3898 2.3652 22 1 12.6428 -3.9233 3.7708 23 1 13.2194 -5.7989 2.3466 24 1 13.7211 -3.5359 1.6336 25 1 2.7406 -1.4912 1.5424 26 1 5.1936 -1.4775 1.5224 27 1 2.7307 1.4934 -1.5322 28 1 4.8426 2.7256 -1.8423 29 1 5.3100 1.3288 -2.8373 30 1 6.8598 2.5357 -0.5091 31 1 7.3391 2.4957 -2.2253 32 1 8.5261 0.6934 -1.1057 33 1 7.2356 -0.0532 -2.0828 34 1 6.6096 -1.9892 0.6373 35 1 9.3198 -0.8927 0.2568 36 1 8.5284 -1.1765 1.8256 37 1 8.3783 -3.5977 1.3119 38 1 9.1698 -3.3139 -0.2569 39 1 10.9597 -6.2182 1.1291 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612416982.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:13 Heat of formation + Delta-G solvation = 17.795820 kcal Electronic energy + Delta-G solvation = -19436.187965 eV Core-core repulsion = 16534.827500 eV Total energy + Delta-G solvation = -2901.360465 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.32731 -38.52258 -37.22961 -36.20440 -35.00203 -32.94215 -31.53083 -30.82701 -28.75801 -26.13170 -24.92714 -24.08001 -22.73580 -22.12014 -21.04095 -19.02871 -18.47727 -17.42501 -16.84398 -16.47157 -16.42843 -15.58072 -15.41572 -15.10135 -14.85380 -14.74023 -14.50909 -14.30648 -14.09121 -13.85468 -13.65262 -13.46276 -13.14419 -13.09370 -12.78807 -12.54505 -12.44055 -12.42439 -11.96661 -11.77334 -11.53492 -11.35073 -11.21344 -11.11375 -10.53388 -9.92396 -9.67580 -9.13779 -8.17681 -6.28951 -0.24317 0.36125 1.42399 1.45141 1.53013 1.57610 1.86973 2.42515 2.80380 2.83915 3.15966 3.37192 3.64934 3.74690 3.89227 4.12998 4.18291 4.27499 4.35084 4.45235 4.55877 4.61383 4.63237 4.74775 4.87116 4.98430 5.00039 5.10601 5.13087 5.17659 5.27798 5.33244 5.40641 5.47685 5.54612 5.63847 5.71865 5.81280 5.86180 6.17400 6.31124 6.40541 6.56582 6.88998 7.40385 8.94138 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.025647 B = 0.003573 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.498747 B = 7834.987668 C = 8700.198106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.283 3.717 3 C -0.041 4.041 4 C -0.067 4.067 5 C -0.129 4.129 6 C -0.048 4.048 7 C -0.072 4.072 8 C -0.061 4.061 9 C -0.079 4.079 10 C -0.114 4.114 11 C -0.109 4.109 12 C 0.121 3.879 13 H 0.056 0.944 14 N -0.692 5.692 15 C 0.085 3.915 16 C 0.033 3.967 17 C -0.544 4.544 18 H 0.061 0.939 19 C 0.001 3.999 20 N -0.932 5.932 21 Si 0.964 3.036 22 H -0.266 1.266 23 H -0.285 1.285 24 H -0.266 1.266 25 H 0.146 0.854 26 H 0.130 0.870 27 H 0.156 0.844 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.340 0.660 35 H 0.061 0.939 36 H 0.021 0.979 37 H -0.010 1.010 38 H -0.007 1.007 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.329 16.418 -3.990 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.031 4.031 3 C -0.045 4.045 4 C -0.088 4.088 5 C -0.147 4.147 6 C -0.049 4.049 7 C -0.072 4.072 8 C -0.081 4.081 9 C -0.116 4.116 10 C -0.152 4.152 11 C -0.147 4.147 12 C 0.012 3.988 13 H 0.074 0.926 14 N -0.326 5.326 15 C -0.044 4.044 16 C -0.004 4.004 17 C -0.582 4.582 18 H 0.079 0.921 19 C -0.197 4.197 20 N -0.572 5.572 21 Si 0.789 3.211 22 H -0.191 1.191 23 H -0.210 1.210 24 H -0.191 1.191 25 H 0.164 0.836 26 H 0.148 0.852 27 H 0.174 0.826 28 H 0.119 0.881 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.161 0.839 35 H 0.079 0.921 36 H 0.039 0.961 37 H 0.009 0.991 38 H 0.012 0.988 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.812 16.208 -4.639 21.175 hybrid contribution 1.051 -0.722 1.468 1.945 sum -11.761 15.485 -3.171 19.702 Atomic orbital electron populations 1.81274 1.13232 1.09832 1.09768 1.25823 0.92638 0.92314 0.92324 1.15917 0.83349 1.02802 1.02412 1.21163 0.93644 0.96900 0.97071 1.21150 0.94156 0.99589 0.99842 1.20025 0.94870 0.95107 0.94937 1.19724 0.92825 0.97704 0.96989 1.21374 0.93252 0.96820 0.96646 1.20585 0.95028 0.98660 0.97307 1.21550 0.95267 0.95699 1.02653 1.21569 0.99582 0.96776 0.96778 1.20478 0.90160 0.89378 0.98795 0.92635 1.60707 1.04633 1.09452 1.57793 1.21819 0.89727 0.97880 0.94944 1.18892 0.94454 0.91931 0.95129 1.21604 1.04569 0.94102 1.37972 0.92056 1.25953 1.02061 0.95454 0.96228 1.70097 1.40413 0.99495 1.47185 0.85515 0.79254 0.77121 0.79238 1.19130 1.21018 1.19133 0.83586 0.85206 0.82648 0.88055 0.89349 0.91337 0.89461 0.92418 0.91727 0.83924 0.92063 0.96110 0.99125 0.98847 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.77 18.54 19.00 0.35 -11.42 16 2 C 0.28 5.83 15.34 88.33 1.36 7.18 16 3 C -0.04 -0.72 5.72 -21.43 -0.12 -0.84 16 4 C -0.07 -1.20 9.76 22.47 0.22 -0.98 16 5 C -0.13 -2.64 8.83 22.33 0.20 -2.45 16 6 C -0.05 -1.02 5.57 -19.76 -0.11 -1.13 16 7 C -0.07 -1.20 5.73 -19.87 -0.11 -1.32 16 8 C -0.06 -0.90 9.31 22.63 0.21 -0.69 16 9 C -0.08 -0.99 5.66 29.74 0.17 -0.82 16 10 C -0.11 -1.69 5.98 30.61 0.18 -1.51 16 11 C -0.11 -2.46 5.38 30.61 0.16 -2.29 16 12 C 0.12 3.04 2.52 44.08 0.11 3.15 16 13 H 0.06 1.41 7.84 -2.38 -0.02 1.39 16 14 N -0.69 -22.73 6.27 -495.94 -3.11 -25.84 16 15 C 0.08 3.38 5.39 86.30 0.46 3.85 16 16 C 0.03 1.74 5.28 29.85 0.16 1.90 16 17 C -0.54 -30.47 9.11 25.60 0.23 -30.24 16 18 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 19 C 0.00 0.06 5.46 84.65 0.46 0.52 16 20 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 21 Si 0.96 43.63 29.54 68.60 2.03 45.66 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 26 H 0.13 2.72 6.52 -2.91 -0.02 2.70 16 27 H 0.16 1.51 8.05 -2.91 -0.02 1.49 16 28 H 0.10 0.80 8.12 -2.39 -0.02 0.78 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 0.99 8.10 -2.39 -0.02 0.97 16 31 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.06 1.42 7.59 -2.39 -0.02 1.40 16 33 H 0.06 1.60 8.10 -2.39 -0.02 1.59 16 34 H 0.34 10.75 6.09 -89.69 -0.55 10.21 16 35 H 0.06 2.41 7.46 -2.39 -0.02 2.40 16 36 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 37 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 38 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 39 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -66.39 326.68 3.64 -62.75 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.51 Total: 10.75 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 3.58 Total: -25.67 kcal Atomic # 7 Polarization: -91.01 SS G_CDS: -2.47 Total: -93.48 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -66.39 3.64 -62.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612416982.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.544 kcal (2) G-P(sol) polarization free energy of solvation -66.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds