Wall clock time and date at job start Mon Mar 30 2020 01:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46496 * 120.00060 * 2 1 4 4 C 1.50709 * 109.47131 * 269.48449 * 3 2 1 5 5 O 1.21293 * 119.99730 * 353.55022 * 4 3 2 6 6 N 1.34772 * 119.99749 * 173.55013 * 4 3 2 7 7 C 1.37094 * 120.00463 * 355.59364 * 6 4 3 8 8 H 1.08002 * 120.00640 * 229.39544 * 7 6 4 9 9 C 1.38956 * 119.99584 * 49.38786 * 7 6 4 10 10 N 1.31408 * 119.99920 * 210.67217 * 9 7 6 11 11 Si 1.86794 * 119.99979 * 30.67776 * 9 7 6 12 12 H 1.48497 * 109.47245 * 90.15887 * 11 9 7 13 13 H 1.48503 * 109.47402 * 210.16054 * 11 9 7 14 14 H 1.48499 * 109.47308 * 330.16214 * 11 9 7 15 15 C 1.46498 * 119.99841 * 175.32430 * 6 4 3 16 16 C 1.54266 * 110.03537 * 237.90491 * 15 6 4 17 17 C 1.54960 * 104.16544 * 217.13844 * 16 15 6 18 18 C 1.54894 * 102.77720 * 37.88352 * 17 16 15 19 19 C 1.53881 * 110.03495 * 120.68633 * 15 6 4 20 20 C 1.34777 * 119.99692 * 180.02562 * 2 1 3 21 21 O 1.21512 * 119.99676 * 185.06912 * 20 2 1 22 22 O 1.34640 * 120.00082 * 5.06638 * 20 2 1 23 23 H 1.08998 * 109.47857 * 89.99397 * 1 2 3 24 24 H 1.09003 * 109.47274 * 210.00298 * 1 2 3 25 25 H 1.09003 * 109.46722 * 329.99412 * 1 2 3 26 26 H 1.08999 * 109.46931 * 149.49151 * 3 2 1 27 27 H 1.08998 * 109.47321 * 29.48584 * 3 2 1 28 28 H 0.97007 * 120.00208 * 180.02562 * 10 9 7 29 29 H 1.08999 * 110.01711 * 359.29760 * 15 6 4 30 30 H 1.09008 * 110.48106 * 335.78582 * 16 15 6 31 31 H 1.09001 * 110.48689 * 98.41814 * 16 15 6 32 32 H 1.08996 * 110.71701 * 279.57616 * 17 16 15 33 33 H 1.08999 * 110.92838 * 156.29459 * 17 16 15 34 34 H 1.08998 * 110.48607 * 203.41270 * 18 17 16 35 35 H 1.08993 * 110.59548 * 80.82109 * 18 17 16 36 36 H 1.08996 * 110.03033 * 238.56983 * 19 15 6 37 37 H 1.08999 * 110.02896 * 0.02562 * 19 15 6 38 38 H 0.96705 * 116.99782 * 180.02562 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4597 1.6974 -1.4208 5 8 2.1781 0.9570 -2.3394 6 7 3.0072 2.9033 -1.6707 7 6 3.2421 3.7763 -0.6401 8 1 2.9116 4.8018 -0.7150 9 6 3.9053 3.3417 0.5010 10 7 3.6348 3.8865 1.6658 11 14 5.1816 1.9833 0.3791 12 1 6.5189 2.5809 0.1350 13 1 5.2079 1.2133 1.6487 14 1 4.8328 1.0755 -0.7432 15 6 3.3567 3.2789 -3.0429 16 6 4.8587 3.6193 -3.1313 17 6 4.9215 4.8009 -4.1320 18 6 3.6558 5.6194 -3.7753 19 6 2.5920 4.5498 -3.4526 20 6 2.1388 -1.1672 -0.0005 21 8 3.3504 -1.1693 0.0925 22 8 1.4695 -2.3309 -0.1040 23 1 -0.3635 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 3.1459 1.1406 0.5217 27 1 1.6045 2.0306 0.5058 28 1 4.0980 3.5834 2.4624 29 1 3.1179 2.4632 -3.7253 30 1 5.2387 3.9248 -2.1563 31 1 5.4215 2.7665 -3.5109 32 1 4.8709 4.4394 -5.1590 33 1 5.8221 5.3949 -3.9770 34 1 3.3416 6.2257 -4.6249 35 1 3.8393 6.2496 -2.9052 36 1 1.9828 4.3511 -4.3343 37 1 1.9612 4.8874 -2.6303 38 1 1.9960 -3.1421 -0.0995 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737387671.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:12 Heat of formation + Delta-G solvation = -127.876823 kcal Electronic energy + Delta-G solvation = -22440.864339 eV Core-core repulsion = 19090.045020 eV Total energy + Delta-G solvation = -3350.819319 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.75374 -40.81632 -38.63233 -37.17310 -36.59399 -36.12106 -33.80825 -30.41479 -29.52941 -28.44202 -27.44252 -26.46055 -23.14672 -21.44917 -21.29091 -21.12825 -19.35142 -19.05823 -18.65285 -17.71869 -17.44140 -16.90322 -16.46142 -15.91080 -15.82227 -15.71387 -15.09742 -14.85493 -14.43588 -14.23231 -14.15571 -13.95081 -13.42704 -13.22319 -13.05931 -12.67897 -12.64888 -12.59923 -12.29835 -11.98894 -11.87925 -11.86298 -11.80851 -11.49866 -11.36722 -11.04273 -10.84339 -9.84999 -9.49441 -8.66753 -6.23934 1.10300 1.18774 1.25378 1.40492 1.68144 1.76156 2.10136 2.63498 2.77100 3.30140 3.78013 3.84752 4.04549 4.15303 4.18622 4.26624 4.40542 4.57861 4.62862 4.66055 4.72965 4.75276 4.86350 4.90448 5.00950 5.12920 5.16372 5.24862 5.35984 5.45521 5.57591 5.61622 5.67909 5.89739 6.17218 6.43323 6.89211 7.24045 7.32676 7.76190 8.45431 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.020211 B = 0.008032 C = 0.007040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.032741 B = 3485.089357 C = 3976.124786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.585 5.585 3 C 0.131 3.869 4 C 0.468 3.532 5 O -0.612 6.612 6 N -0.463 5.463 7 C -0.338 4.338 8 H 0.097 0.903 9 C 0.072 3.928 10 N -0.853 5.853 11 Si 0.870 3.130 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.283 1.283 15 C 0.118 3.882 16 C -0.136 4.136 17 C -0.109 4.109 18 C -0.110 4.110 19 C -0.119 4.119 20 C 0.663 3.337 21 O -0.624 6.624 22 O -0.506 6.506 23 H 0.055 0.945 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.132 0.868 28 H 0.283 0.717 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.461 -1.761 -4.293 6.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.324 5.324 3 C 0.006 3.994 4 C 0.257 3.743 5 O -0.498 6.498 6 N -0.183 5.183 7 C -0.465 4.465 8 H 0.115 0.885 9 C -0.137 4.137 10 N -0.487 5.487 11 Si 0.698 3.302 12 H -0.200 1.200 13 H -0.213 1.213 14 H -0.209 1.209 15 C 0.015 3.985 16 C -0.174 4.174 17 C -0.147 4.147 18 C -0.148 4.148 19 C -0.157 4.157 20 C 0.417 3.583 21 O -0.517 6.517 22 O -0.317 6.317 23 H 0.073 0.927 24 H 0.119 0.881 25 H 0.112 0.888 26 H 0.095 0.905 27 H 0.150 0.850 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.305 0.695 Dipole moment (debyes) X Y Z Total from point charges -4.513 -1.779 -4.506 6.620 hybrid contribution 1.456 -1.386 0.373 2.045 sum -3.056 -3.165 -4.133 6.036 Atomic orbital electron populations 1.22028 0.75513 1.05250 1.02839 1.46395 1.09034 1.02161 1.74812 1.21373 0.98606 0.84248 0.95190 1.21192 0.78738 0.83060 0.91312 1.90490 1.56919 1.55243 1.47149 1.43929 1.53380 1.13990 1.07046 1.18676 1.38974 0.95799 0.93075 0.88528 1.25638 0.96235 0.96658 0.95137 1.69842 1.38101 1.42335 0.98457 0.87048 0.83398 0.81429 0.78356 1.20017 1.21290 1.20903 1.21950 0.95075 0.97401 0.84114 1.22703 0.95214 0.98867 1.00606 1.22405 0.98673 0.95293 0.98303 1.22253 0.94278 0.96824 1.01449 1.22324 0.98326 0.94319 1.00753 1.17830 0.82861 0.82316 0.75301 1.91003 1.14986 1.87659 1.58034 1.84138 1.44243 1.15790 1.87509 0.92669 0.88110 0.88802 0.90523 0.85022 0.90652 0.91618 0.91986 0.93249 0.90197 0.90337 0.89447 0.92159 0.90967 0.92167 0.69498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.43 10.45 127.77 1.33 3.77 16 2 N -0.58 -23.45 2.39 -981.65 -2.35 -25.80 16 3 C 0.13 6.04 3.98 85.64 0.34 6.38 16 4 C 0.47 23.47 6.05 87.66 0.53 24.00 16 5 O -0.61 -32.87 15.75 -3.07 -0.05 -32.92 16 6 N -0.46 -22.06 1.91 -609.36 -1.16 -23.22 16 7 C -0.34 -16.61 7.30 84.04 0.61 -16.00 16 8 H 0.10 4.91 7.37 -2.91 -0.02 4.89 16 9 C 0.07 3.65 3.83 84.93 0.33 3.97 16 10 N -0.85 -43.76 13.96 21.66 0.30 -43.46 16 11 Si 0.87 44.53 24.19 68.60 1.66 46.19 16 12 H -0.27 -13.56 7.11 99.48 0.71 -12.85 16 13 H -0.29 -14.91 7.11 99.48 0.71 -14.21 16 14 H -0.28 -16.08 6.21 99.48 0.62 -15.47 16 15 C 0.12 4.90 3.29 45.72 0.15 5.05 16 16 C -0.14 -5.17 6.42 31.69 0.20 -4.96 16 17 C -0.11 -3.08 6.91 31.91 0.22 -2.86 16 18 C -0.11 -3.11 6.83 31.67 0.22 -2.89 16 19 C -0.12 -4.05 6.24 31.32 0.20 -3.86 16 20 C 0.66 27.16 8.69 129.79 1.13 28.29 16 21 O -0.62 -30.91 16.69 19.80 0.33 -30.58 16 22 O -0.51 -14.63 12.31 -55.49 -0.68 -15.31 16 23 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.10 2.32 7.46 -2.39 -0.02 2.31 16 25 H 0.09 2.32 7.89 -2.39 -0.02 2.30 16 26 H 0.08 3.91 2.59 -2.39 -0.01 3.91 16 27 H 0.13 5.74 7.40 -2.39 -0.02 5.72 16 28 H 0.28 13.82 8.31 -92.70 -0.77 13.05 16 29 H 0.07 2.92 6.95 -2.39 -0.02 2.91 16 30 H 0.06 2.65 6.51 -2.38 -0.02 2.64 16 31 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.06 2.24 6.95 -2.39 -0.02 2.23 16 38 H 0.44 8.29 9.11 -74.05 -0.67 7.61 16 Total: -1.00 -69.59 305.16 3.63 -65.96 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.32 Total: 18.23 kcal Atomic # 6 Polarization: 35.64 SS G_CDS: 5.26 Total: 40.90 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -3.21 Total: -92.48 kcal Atomic # 8 Polarization: -78.40 SS G_CDS: -0.40 Total: -78.80 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.66 Total: 46.19 kcal Total: -69.59 3.63 -65.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737387671.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.916 kcal (2) G-P(sol) polarization free energy of solvation -69.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds