Wall clock time and date at job start Mon Mar 30 2020 01:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34776 * 119.99895 * 2 1 4 4 O 1.21582 * 120.00086 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99918 * 179.97438 * 3 2 1 6 6 C 1.46501 * 120.00134 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47241 * 180.02562 * 6 5 3 8 8 C 1.50703 * 109.46850 * 179.97438 * 7 6 5 9 9 O 1.20824 * 120.00159 * 0.02562 * 8 7 6 10 10 O 1.34233 * 119.99694 * 179.97438 * 8 7 6 11 11 C 1.45191 * 116.99742 * 185.11513 * 10 8 7 12 12 C 1.50701 * 112.85371 * 296.94574 * 11 10 8 13 13 H 1.08004 * 119.99923 * 115.13254 * 12 11 10 14 14 C 1.37877 * 119.99806 * 295.41590 * 12 11 10 15 15 N 1.31512 * 120.00075 * 4.92997 * 14 12 11 16 16 Si 1.86803 * 119.99926 * 184.94296 * 14 12 11 17 17 H 1.48502 * 109.47197 * 59.99063 * 16 14 12 18 18 H 1.48496 * 109.47285 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46697 * 299.99390 * 16 14 12 20 20 C 1.53785 * 113.61631 * 68.14533 * 11 10 8 21 21 C 1.53959 * 87.02053 * 89.22699 * 20 11 10 22 22 C 1.53784 * 87.11062 * 25.36457 * 21 20 11 23 23 H 1.09000 * 109.47104 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47259 * 299.99447 * 1 2 3 25 25 H 1.09007 * 109.46941 * 59.99863 * 1 2 3 26 26 H 0.96999 * 120.00221 * 180.02562 * 2 1 3 27 27 H 0.97001 * 119.99754 * 0.02562 * 5 3 2 28 28 H 1.09000 * 109.46862 * 59.99885 * 6 5 3 29 29 H 1.09003 * 109.46790 * 300.00077 * 6 5 3 30 30 H 1.08995 * 109.47129 * 59.99657 * 7 6 5 31 31 H 1.08995 * 109.46911 * 299.99756 * 7 6 5 32 32 H 0.96998 * 120.00027 * 185.00155 * 15 14 12 33 33 H 1.08993 * 113.61470 * 203.74528 * 20 11 10 34 34 H 1.08997 * 113.61498 * 334.64983 * 20 11 10 35 35 H 1.08997 * 113.53953 * 270.81115 * 21 20 11 36 36 H 1.09001 * 113.74435 * 139.94021 * 21 20 11 37 37 H 1.09002 * 113.61550 * 220.09147 * 22 21 20 38 38 H 1.09001 * 113.69217 * 89.19816 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4867 1.1672 0.0005 6 6 4.2192 2.4359 0.0011 7 6 5.7234 2.1564 0.0010 8 6 6.4769 3.4615 0.0009 9 8 5.8727 4.5079 0.0014 10 8 7.8192 3.4615 0.0013 11 6 8.4783 4.7501 0.1166 12 6 8.1836 5.6642 -1.0447 13 1 7.6337 6.5799 -0.8852 14 6 8.6110 5.3285 -2.3119 15 7 9.1898 4.1669 -2.5245 16 14 8.3681 6.5238 -3.7267 17 1 9.0820 7.7920 -3.4314 18 1 8.9104 5.9301 -4.9751 19 1 6.9190 6.7999 -3.8982 20 6 8.2902 5.4177 1.4891 21 6 9.5598 4.6707 1.9368 22 6 9.9747 4.6484 0.4562 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.9501 -0.8400 -0.0004 27 1 3.9716 0.3271 0.0005 28 1 3.9555 3.0073 0.8911 29 1 3.9562 3.0077 -0.8889 30 1 5.9867 1.5852 -0.8892 31 1 5.9867 1.5845 0.8907 32 1 9.5554 3.9600 -3.3988 33 1 8.4060 6.5012 1.4672 34 1 7.3878 5.0979 2.0102 35 1 9.3604 3.6817 2.3493 36 1 10.2206 5.2666 2.5664 37 1 10.4303 3.7085 0.1445 38 1 10.5522 5.5207 0.1500 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797244575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:35 Heat of formation + Delta-G solvation = -119.522935 kcal Electronic energy + Delta-G solvation = -20992.623475 eV Core-core repulsion = 17642.166408 eV Total energy + Delta-G solvation = -3350.457067 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.33083 -40.91672 -38.93969 -36.43952 -35.86068 -35.57251 -34.42396 -32.04246 -28.53305 -27.64171 -26.35524 -25.30469 -24.03569 -22.09690 -21.68131 -20.02317 -19.64416 -18.98770 -17.71805 -17.27156 -16.87396 -16.79098 -16.72760 -16.36458 -15.71766 -15.43902 -15.18270 -15.01375 -14.77399 -13.93022 -13.83867 -13.46759 -13.25903 -13.07575 -13.01555 -12.83972 -12.78807 -12.52089 -12.33929 -11.97954 -11.81107 -11.65698 -11.53199 -11.10653 -10.77296 -10.47163 -10.46477 -10.28077 -9.82442 -8.16890 -6.32762 1.34981 1.37481 1.44713 1.56250 1.70911 2.10227 2.37157 2.39169 3.14033 3.41437 3.66764 3.95584 3.99144 4.06608 4.17392 4.36960 4.47436 4.50457 4.67170 4.71937 4.82866 4.87540 4.88867 4.99047 5.06097 5.10968 5.35825 5.38006 5.48506 5.52730 5.66102 5.76827 5.97772 6.01255 6.45873 6.69647 7.10426 7.31072 7.43826 7.55964 8.86545 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.021312 B = 0.004528 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.527725 B = 6182.549520 C = 6953.721222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.734 5.734 3 C 0.693 3.307 4 O -0.643 6.643 5 N -0.727 5.727 6 C 0.164 3.836 7 C -0.110 4.110 8 C 0.451 3.549 9 O -0.543 6.543 10 O -0.345 6.345 11 C 0.210 3.790 12 C -0.540 4.540 13 H 0.041 0.959 14 C 0.037 3.963 15 N -0.886 5.886 16 Si 0.940 3.060 17 H -0.265 1.265 18 H -0.274 1.274 19 H -0.287 1.287 20 C -0.152 4.152 21 C -0.124 4.124 22 C -0.096 4.096 23 H 0.118 0.882 24 H 0.045 0.955 25 H 0.043 0.957 26 H 0.418 0.582 27 H 0.418 0.582 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.122 0.878 31 H 0.140 0.860 32 H 0.264 0.736 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.053 0.947 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.302 -13.834 6.432 16.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.391 5.391 3 C 0.392 3.608 4 O -0.525 6.525 5 N -0.384 5.384 6 C 0.039 3.961 7 C -0.148 4.148 8 C 0.294 3.706 9 O -0.434 6.434 10 O -0.261 6.261 11 C 0.175 3.825 12 C -0.577 4.577 13 H 0.059 0.941 14 C -0.166 4.166 15 N -0.523 5.523 16 Si 0.765 3.235 17 H -0.190 1.190 18 H -0.199 1.199 19 H -0.213 1.213 20 C -0.190 4.190 21 C -0.161 4.161 22 C -0.134 4.134 23 H 0.136 0.864 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.254 0.746 27 H 0.256 0.744 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.140 0.860 31 H 0.158 0.842 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.959 -12.711 6.276 16.257 hybrid contribution 0.169 0.433 -1.142 1.232 sum -7.790 -12.278 5.135 15.421 Atomic orbital electron populations 1.21555 0.77264 1.04246 1.01082 1.44787 1.08289 1.06541 1.79461 1.16249 0.82071 0.84690 0.77781 1.90924 1.69004 1.32736 1.59824 1.44733 1.04214 1.09762 1.79715 1.20541 0.89009 0.84903 1.01675 1.21400 0.91951 0.93233 1.08172 1.23701 0.82462 0.91961 0.72451 1.90596 1.70168 1.36052 1.46599 1.86357 1.19757 1.38463 1.81503 1.20841 0.90953 0.78606 0.92054 1.21401 1.36858 1.05964 0.93491 0.94054 1.25604 0.94566 0.96107 1.00305 1.70098 1.37551 1.20881 1.23800 0.85912 0.77970 0.80215 0.79362 1.18992 1.19918 1.21339 1.23434 0.97780 1.00152 0.97608 1.22887 0.96598 1.00489 0.96091 1.22675 0.95079 1.00823 0.94784 0.86354 0.93581 0.93863 0.74555 0.74443 0.92504 0.93851 0.86008 0.84174 0.92678 0.90428 0.93497 0.89777 0.89683 0.92841 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.48 10.70 127.77 1.37 2.84 16 2 N -0.73 -12.18 5.72 -500.19 -2.86 -15.04 16 3 C 0.69 18.88 8.57 179.05 1.53 20.42 16 4 O -0.64 -25.11 16.34 -3.97 -0.06 -25.17 16 5 N -0.73 -16.62 5.56 -478.54 -2.66 -19.28 16 6 C 0.16 5.14 4.96 86.38 0.43 5.57 16 7 C -0.11 -3.22 5.93 29.85 0.18 -3.04 16 8 C 0.45 20.01 7.34 71.24 0.52 20.54 16 9 O -0.54 -28.28 14.20 21.97 0.31 -27.96 16 10 O -0.34 -16.72 9.83 -51.45 -0.51 -17.23 16 11 C 0.21 10.52 0.33 -11.01 0.00 10.52 16 12 C -0.54 -30.79 7.16 25.60 0.18 -30.61 16 13 H 0.04 2.48 7.82 -2.91 -0.02 2.46 16 14 C 0.04 2.08 5.38 84.65 0.46 2.53 16 15 N -0.89 -49.83 12.79 21.45 0.27 -49.56 16 16 Si 0.94 44.84 29.54 68.60 2.03 46.87 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 20 C -0.15 -6.58 6.97 31.18 0.22 -6.36 16 21 C -0.12 -4.44 8.03 31.18 0.25 -4.19 16 22 C -0.10 -4.24 7.08 31.12 0.22 -4.02 16 23 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 26 H 0.42 3.41 8.84 -92.71 -0.82 2.59 16 27 H 0.42 5.67 8.49 -92.71 -0.79 4.88 16 28 H 0.06 2.00 8.10 -2.39 -0.02 1.98 16 29 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 30 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 31 H 0.14 2.97 8.14 -2.39 -0.02 2.95 16 32 H 0.26 14.11 8.32 -92.71 -0.77 13.34 16 33 H 0.08 3.35 8.09 -2.39 -0.02 3.33 16 34 H 0.05 2.02 7.55 -2.39 -0.02 2.00 16 35 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.05 2.42 8.14 -2.39 -0.02 2.41 16 38 H 0.08 3.38 8.09 -2.39 -0.02 3.36 16 Total: -1.00 -79.69 326.29 1.34 -78.34 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -0.53 Total: 14.84 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 5.35 Total: 14.20 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -5.25 Total: -83.88 kcal Atomic # 8 Polarization: -70.11 SS G_CDS: -0.26 Total: -70.37 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -79.69 1.34 -78.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797244575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.181 kcal (2) G-P(sol) polarization free energy of solvation -79.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds