Wall clock time and date at job start Mon Mar 30 2020 01:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45188 * 1 3 3 C 1.34640 * 117.00230 * 2 1 4 4 O 1.21512 * 119.99852 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99976 * 179.97438 * 3 2 1 6 6 C 1.46928 * 120.62845 * 179.97438 * 5 3 2 7 7 C 1.53189 * 108.89505 * 233.51811 * 6 5 3 8 8 C 1.53073 * 109.29483 * 305.58174 * 7 6 5 9 9 C 1.50710 * 109.44034 * 181.23338 * 8 7 6 10 10 O 1.21292 * 119.99804 * 247.49743 * 9 8 7 11 11 N 1.34777 * 119.99398 * 67.49728 * 9 8 7 12 12 C 1.46507 * 119.99198 * 183.62305 * 11 9 8 13 13 C 1.37092 * 120.00345 * 3.62370 * 11 9 8 14 14 H 1.07998 * 120.00447 * 346.43907 * 13 11 9 15 15 C 1.38959 * 119.99933 * 166.44399 * 13 11 9 16 16 N 1.31406 * 119.99908 * 8.85084 * 15 13 11 17 17 Si 1.86796 * 119.99958 * 188.84585 * 15 13 11 18 18 H 1.48497 * 109.47156 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46835 * 119.99906 * 17 15 13 20 20 H 1.48491 * 109.47206 * 240.00130 * 17 15 13 21 21 C 1.53036 * 109.65980 * 61.15298 * 8 7 6 22 22 C 1.46920 * 120.63425 * 359.97438 * 5 3 2 23 23 H 1.09005 * 109.47319 * 300.00257 * 1 2 3 24 24 H 1.09006 * 109.47445 * 59.99775 * 1 2 3 25 25 H 1.09000 * 109.47398 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.58731 * 353.37981 * 6 5 3 27 27 H 1.09004 * 109.58224 * 113.65970 * 6 5 3 28 28 H 1.09001 * 109.49583 * 65.39063 * 7 6 5 29 29 H 1.08999 * 109.49776 * 185.48633 * 7 6 5 30 30 H 1.08993 * 109.34821 * 301.12755 * 8 7 6 31 31 H 1.08994 * 109.47344 * 5.49082 * 12 11 9 32 32 H 1.09000 * 109.46739 * 125.49491 * 12 11 9 33 33 H 1.09002 * 109.46587 * 245.48524 * 12 11 9 34 34 H 0.96994 * 120.00241 * 180.02562 * 16 15 13 35 35 H 1.09003 * 109.50159 * 178.74455 * 21 8 7 36 36 H 1.09002 * 109.52407 * 58.66670 * 21 8 7 37 37 H 1.08999 * 109.59160 * 246.19817 * 22 5 3 38 38 H 1.09008 * 109.58200 * 6.48107 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2701 0.0005 6 6 4.0906 2.5718 0.0000 7 6 5.0846 2.6109 -1.1650 8 6 6.0241 1.4063 -1.0688 9 6 7.0228 1.4579 -2.1963 10 8 6.9887 0.6229 -3.0754 11 7 7.9539 2.4319 -2.2277 12 6 8.8738 2.5294 -3.3637 13 6 8.0400 3.3313 -1.1966 14 1 7.2403 3.4032 -0.4744 15 6 9.1565 4.1505 -1.0807 16 7 10.0457 4.1898 -2.0474 17 14 9.3931 5.1959 0.4491 18 1 8.2596 4.9717 1.3820 19 1 10.6647 4.8167 1.1159 20 1 9.4433 6.6296 0.0660 21 6 5.2133 0.1120 -1.1649 22 6 4.2229 0.0468 0.0017 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.3563 3.3686 -0.1193 27 1 4.6247 2.7050 0.9408 28 1 4.5407 2.5713 -2.1088 29 1 5.6648 3.5324 -1.1174 30 1 6.5512 1.4346 -0.1152 31 1 8.5934 1.7985 -4.1221 32 1 8.8217 3.5319 -3.7883 33 1 9.8908 2.3304 -3.0257 34 1 10.8252 4.7613 -1.9664 35 1 5.8869 -0.7437 -1.1186 36 1 4.6664 0.0938 -2.1077 37 1 4.7699 -0.0273 0.9415 38 1 3.5756 -0.8226 -0.1140 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824861670.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:13 Heat of formation + Delta-G solvation = -101.873666 kcal Electronic energy + Delta-G solvation = -21680.969283 eV Core-core repulsion = 18331.277546 eV Total energy + Delta-G solvation = -3349.691737 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.57417 -39.08815 -37.35579 -36.04441 -34.82716 -32.70697 -31.44901 -30.81652 -27.94936 -26.69338 -25.45931 -23.96291 -23.03773 -21.44498 -19.81996 -19.01005 -18.10460 -17.09878 -16.75443 -16.45083 -16.08197 -14.69458 -14.48656 -14.30674 -14.27290 -14.21356 -13.80854 -13.25196 -13.09235 -12.91694 -12.58185 -12.10209 -12.03390 -11.69732 -11.45910 -11.33317 -11.11238 -11.01206 -10.78967 -10.65142 -10.52132 -10.40041 -10.27498 -10.16551 -9.98749 -9.10525 -8.71959 -8.27970 -7.89896 -6.34640 -3.94315 2.22586 2.88017 3.05667 3.16004 3.18525 3.86376 3.95925 4.01970 4.74115 5.00624 5.02524 5.08507 5.13012 5.23268 5.33753 5.38423 5.50646 5.56034 5.71779 5.79305 5.96940 6.07511 6.12121 6.27184 6.39280 6.43337 6.51915 6.74285 6.78954 6.92773 7.22947 7.36623 7.42386 7.49407 7.74154 8.33110 8.35376 9.02610 9.52096 9.91858 10.60071 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.025818 B = 0.005213 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.248700 B = 5369.817519 C = 6107.938085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.372 6.372 3 C 0.648 3.352 4 O -0.580 6.580 5 N -0.589 5.589 6 C 0.128 3.872 7 C -0.130 4.130 8 C -0.087 4.087 9 C 0.453 3.547 10 O -0.615 6.615 11 N -0.444 5.444 12 C 0.121 3.879 13 C -0.335 4.335 14 H 0.106 0.894 15 C 0.036 3.964 16 N -0.872 5.872 17 Si 0.922 3.078 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.281 1.281 21 C -0.111 4.111 22 C 0.111 3.889 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.033 0.967 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.267 0.733 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.132 -5.080 6.150 13.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.286 6.286 3 C 0.402 3.598 4 O -0.470 6.470 5 N -0.329 5.329 6 C 0.007 3.993 7 C -0.168 4.168 8 C -0.109 4.109 9 C 0.241 3.759 10 O -0.503 6.503 11 N -0.161 5.161 12 C -0.022 4.022 13 C -0.463 4.463 14 H 0.124 0.876 15 C -0.169 4.169 16 N -0.511 5.511 17 Si 0.748 3.252 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.207 1.207 21 C -0.149 4.149 22 C -0.011 4.011 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.118 0.882 26 H 0.112 0.888 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.107 0.893 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.188 -5.061 5.669 13.525 hybrid contribution 0.256 0.767 0.749 1.102 sum -10.932 -4.294 6.418 13.384 Atomic orbital electron populations 1.23141 0.74926 1.03162 1.02555 1.86235 1.23765 1.31315 1.87243 1.18049 0.83328 0.81966 0.76440 1.90964 1.64342 1.34912 1.56761 1.47052 1.01644 1.09152 1.75020 1.21761 0.95175 0.82984 0.99347 1.22054 0.96651 1.00189 0.97950 1.20957 0.95285 0.94895 0.99718 1.19882 0.84638 0.83035 0.88303 1.90510 1.76473 1.41545 1.41785 1.43705 1.28692 1.24866 1.18860 1.21536 0.93487 0.99676 0.87462 1.19884 1.04964 1.16098 1.05329 0.87616 1.25364 0.95413 0.97992 0.98105 1.70212 1.11988 1.38258 1.30639 0.85938 0.78712 0.79271 0.81235 1.19146 1.20543 1.20653 1.21688 0.97234 0.98096 0.97903 1.21846 0.93760 0.86014 0.99461 0.92078 0.91992 0.88202 0.88774 0.90755 0.91724 0.87844 0.89333 0.94821 0.92297 0.91460 0.92251 0.90250 0.91080 0.91133 0.89252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.54 10.56 101.05 1.07 1.61 16 2 O -0.37 -4.94 9.20 -40.32 -0.37 -5.31 16 3 C 0.65 10.19 8.43 54.06 0.46 10.65 16 4 O -0.58 -10.50 15.55 -19.28 -0.30 -10.80 16 5 N -0.59 -8.76 2.97 -178.57 -0.53 -9.29 16 6 C 0.13 1.90 6.43 -3.71 -0.02 1.88 16 7 C -0.13 -2.22 4.98 -26.60 -0.13 -2.35 16 8 C -0.09 -1.61 1.64 -91.71 -0.15 -1.76 16 9 C 0.45 10.68 6.94 -10.98 -0.08 10.61 16 10 O -0.62 -16.10 15.35 5.55 0.09 -16.01 16 11 N -0.44 -11.07 3.03 -122.18 -0.37 -11.44 16 12 C 0.12 3.04 8.87 59.85 0.53 3.57 16 13 C -0.34 -8.08 8.40 -14.93 -0.13 -8.20 16 14 H 0.11 2.32 4.78 -52.49 -0.25 2.07 16 15 C 0.04 0.86 5.46 -17.47 -0.10 0.77 16 16 N -0.87 -22.26 9.58 55.50 0.53 -21.73 16 17 Si 0.92 18.76 29.56 -169.99 -5.03 13.73 16 18 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 19 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 20 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 21 C -0.11 -1.79 4.67 -26.63 -0.12 -1.91 16 22 C 0.11 1.48 6.45 -3.73 -0.02 1.45 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.09 1.43 7.00 -51.93 -0.36 1.07 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.10 1.87 5.64 -51.93 -0.29 1.57 16 30 H 0.09 1.59 7.55 -51.93 -0.39 1.19 16 31 H 0.03 0.83 6.94 -51.93 -0.36 0.47 16 32 H 0.06 1.50 7.32 -51.93 -0.38 1.12 16 33 H 0.07 1.74 6.86 -51.93 -0.36 1.39 16 34 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.07 1.27 8.06 -51.93 -0.42 0.85 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.09 1.07 6.93 -51.92 -0.36 0.71 16 LS Contribution 305.75 15.07 4.61 4.61 Total: -1.00 -30.44 305.75 -5.34 -35.78 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -5.27 Total: 4.14 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: 1.30 Total: 16.31 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: -0.37 Total: -42.45 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.59 Total: -32.12 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.44 -5.34 -35.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824861670.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.091 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds