Wall clock time and date at job start Mon Mar 30 2020 01:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45188 * 1 3 3 C 1.34640 * 117.00230 * 2 1 4 4 O 1.21512 * 119.99852 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99976 * 179.97438 * 3 2 1 6 6 C 1.46928 * 120.62845 * 179.97438 * 5 3 2 7 7 C 1.53189 * 108.89505 * 233.51811 * 6 5 3 8 8 C 1.53073 * 109.29483 * 305.58174 * 7 6 5 9 9 C 1.50710 * 109.44034 * 181.23338 * 8 7 6 10 10 O 1.21292 * 119.99804 * 247.49743 * 9 8 7 11 11 N 1.34777 * 119.99398 * 67.49728 * 9 8 7 12 12 C 1.46507 * 119.99198 * 183.62305 * 11 9 8 13 13 C 1.37092 * 120.00345 * 3.62370 * 11 9 8 14 14 H 1.07998 * 120.00447 * 346.43907 * 13 11 9 15 15 C 1.38959 * 119.99933 * 166.44399 * 13 11 9 16 16 N 1.31406 * 119.99908 * 8.85084 * 15 13 11 17 17 Si 1.86796 * 119.99958 * 188.84585 * 15 13 11 18 18 H 1.48497 * 109.47156 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46835 * 119.99906 * 17 15 13 20 20 H 1.48491 * 109.47206 * 240.00130 * 17 15 13 21 21 C 1.53036 * 109.65980 * 61.15298 * 8 7 6 22 22 C 1.46920 * 120.63425 * 359.97438 * 5 3 2 23 23 H 1.09005 * 109.47319 * 300.00257 * 1 2 3 24 24 H 1.09006 * 109.47445 * 59.99775 * 1 2 3 25 25 H 1.09000 * 109.47398 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.58731 * 353.37981 * 6 5 3 27 27 H 1.09004 * 109.58224 * 113.65970 * 6 5 3 28 28 H 1.09001 * 109.49583 * 65.39063 * 7 6 5 29 29 H 1.08999 * 109.49776 * 185.48633 * 7 6 5 30 30 H 1.08993 * 109.34821 * 301.12755 * 8 7 6 31 31 H 1.08994 * 109.47344 * 5.49082 * 12 11 9 32 32 H 1.09000 * 109.46739 * 125.49491 * 12 11 9 33 33 H 1.09002 * 109.46587 * 245.48524 * 12 11 9 34 34 H 0.96994 * 120.00241 * 180.02562 * 16 15 13 35 35 H 1.09003 * 109.50159 * 178.74455 * 21 8 7 36 36 H 1.09002 * 109.52407 * 58.66670 * 21 8 7 37 37 H 1.08999 * 109.59160 * 246.19817 * 22 5 3 38 38 H 1.09008 * 109.58200 * 6.48107 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2701 0.0005 6 6 4.0906 2.5718 0.0000 7 6 5.0846 2.6109 -1.1650 8 6 6.0241 1.4063 -1.0688 9 6 7.0228 1.4579 -2.1963 10 8 6.9887 0.6229 -3.0754 11 7 7.9539 2.4319 -2.2277 12 6 8.8738 2.5294 -3.3637 13 6 8.0400 3.3313 -1.1966 14 1 7.2403 3.4032 -0.4744 15 6 9.1565 4.1505 -1.0807 16 7 10.0457 4.1898 -2.0474 17 14 9.3931 5.1959 0.4491 18 1 8.2596 4.9717 1.3820 19 1 10.6647 4.8167 1.1159 20 1 9.4433 6.6296 0.0660 21 6 5.2133 0.1120 -1.1649 22 6 4.2229 0.0468 0.0017 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.3563 3.3686 -0.1193 27 1 4.6247 2.7050 0.9408 28 1 4.5407 2.5713 -2.1088 29 1 5.6648 3.5324 -1.1174 30 1 6.5512 1.4346 -0.1152 31 1 8.5934 1.7985 -4.1221 32 1 8.8217 3.5319 -3.7883 33 1 9.8908 2.3304 -3.0257 34 1 10.8252 4.7613 -1.9664 35 1 5.8869 -0.7437 -1.1186 36 1 4.6664 0.0938 -2.1077 37 1 4.7699 -0.0273 0.9415 38 1 3.5756 -0.8226 -0.1140 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824861670.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:12 Heat of formation + Delta-G solvation = -121.280306 kcal Electronic energy + Delta-G solvation = -21681.810818 eV Core-core repulsion = 18331.277546 eV Total energy + Delta-G solvation = -3350.533272 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.76243 -40.72982 -38.70691 -37.25509 -36.73832 -34.11878 -33.30072 -32.08106 -29.11758 -28.24412 -27.05540 -25.59086 -24.29138 -22.76832 -21.19761 -20.67201 -19.41420 -18.55168 -18.10897 -17.84349 -17.53388 -16.19144 -16.10353 -15.91950 -15.78157 -15.38481 -15.00597 -14.78745 -14.45266 -14.40226 -13.84278 -13.46573 -13.31762 -13.24935 -13.01287 -12.89596 -12.75068 -12.49715 -12.36126 -12.04967 -11.92421 -11.78293 -11.76536 -11.58146 -11.37043 -10.98176 -10.29737 -9.86625 -9.77261 -8.20426 -5.86563 1.17233 1.45155 1.51763 1.64015 1.70185 2.04693 2.31274 2.92628 3.02936 3.18474 3.80289 3.92547 4.03318 4.10509 4.35549 4.38173 4.39622 4.41512 4.50892 4.68259 4.72803 4.78800 4.82128 4.87901 4.99605 5.04190 5.13216 5.19238 5.29401 5.40137 5.43793 5.45203 5.57632 5.83724 6.27300 6.44977 7.14369 7.18276 7.63181 8.02638 8.76447 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.025818 B = 0.005213 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.248700 B = 5369.817519 C = 6107.938085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.372 6.372 3 C 0.645 3.355 4 O -0.609 6.609 5 N -0.591 5.591 6 C 0.135 3.865 7 C -0.120 4.120 8 C -0.080 4.080 9 C 0.442 3.558 10 O -0.647 6.647 11 N -0.460 5.460 12 C 0.135 3.865 13 C -0.348 4.348 14 H 0.129 0.871 15 C -0.012 4.012 16 N -0.906 5.906 17 Si 0.991 3.009 18 H -0.245 1.245 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.103 4.103 22 C 0.120 3.880 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.137 0.863 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.045 0.955 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.027 0.973 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.267 0.733 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.098 0.902 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.365 -5.439 8.658 16.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.285 6.285 3 C 0.400 3.600 4 O -0.502 6.502 5 N -0.330 5.330 6 C 0.014 3.986 7 C -0.158 4.158 8 C -0.101 4.101 9 C 0.232 3.768 10 O -0.537 6.537 11 N -0.176 5.176 12 C -0.008 4.008 13 C -0.474 4.474 14 H 0.146 0.854 15 C -0.213 4.213 16 N -0.546 5.546 17 Si 0.815 3.185 18 H -0.168 1.168 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.142 4.142 22 C -0.001 4.001 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.155 0.845 26 H 0.109 0.891 27 H 0.117 0.883 28 H 0.064 0.936 29 H 0.112 0.888 30 H 0.121 0.879 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.116 0.884 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.444 -5.446 8.185 15.859 hybrid contribution 0.618 0.823 -0.140 1.039 sum -11.825 -4.623 8.045 15.031 Atomic orbital electron populations 1.23490 0.72939 1.05595 1.02440 1.86241 1.25671 1.29838 1.86776 1.18202 0.83479 0.82272 0.76018 1.90943 1.65028 1.36083 1.58100 1.47127 1.01711 1.09556 1.74655 1.21688 0.94540 0.83214 0.99126 1.21917 0.96574 0.99003 0.98327 1.20973 0.94486 0.96763 0.97877 1.20846 0.84775 0.81998 0.89180 1.90479 1.77224 1.42645 1.43400 1.43999 1.28949 1.25684 1.19017 1.21280 0.93131 0.98642 0.87790 1.20390 1.05813 1.15907 1.05328 0.85391 1.26295 0.95003 0.99202 1.00820 1.70331 1.12549 1.39235 1.32492 0.84881 0.78942 0.76968 0.77749 1.16758 1.20994 1.21038 1.21618 0.97406 0.96799 0.98397 1.21892 0.93224 0.85953 0.99049 0.91849 0.92526 0.84510 0.89133 0.88253 0.93625 0.88765 0.87860 0.95400 0.93435 0.92733 0.92287 0.90174 0.93319 0.88437 0.87576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.82 10.56 113.37 1.20 2.02 16 2 O -0.37 -8.92 9.20 -55.50 -0.51 -9.43 16 3 C 0.65 18.94 8.43 129.79 1.09 20.04 16 4 O -0.61 -21.21 15.55 19.80 0.31 -20.90 16 5 N -0.59 -16.03 2.97 -949.29 -2.82 -18.85 16 6 C 0.14 3.68 6.43 86.36 0.55 4.24 16 7 C -0.12 -3.94 4.98 30.68 0.15 -3.78 16 8 C -0.08 -2.84 1.64 -11.50 -0.02 -2.86 16 9 C 0.44 20.91 6.94 87.66 0.61 21.52 16 10 O -0.65 -34.48 15.35 -3.07 -0.05 -34.52 16 11 N -0.46 -23.11 3.03 -658.86 -1.99 -25.10 16 12 C 0.14 6.99 8.87 127.77 1.13 8.12 16 13 C -0.35 -16.47 8.40 84.04 0.71 -15.77 16 14 H 0.13 5.34 4.78 -2.91 -0.01 5.33 16 15 C -0.01 -0.60 5.46 84.93 0.46 -0.13 16 16 N -0.91 -46.78 9.58 21.67 0.21 -46.57 16 17 Si 0.99 37.33 29.56 68.60 2.03 39.35 16 18 H -0.24 -8.26 7.11 99.48 0.71 -7.56 16 19 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 20 H -0.28 -10.82 7.11 99.48 0.71 -10.12 16 21 C -0.10 -3.18 4.67 30.66 0.14 -3.04 16 22 C 0.12 2.80 6.45 86.36 0.56 3.35 16 23 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 24 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 25 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.09 2.58 7.00 -2.39 -0.02 2.57 16 27 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 28 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.09 3.28 5.64 -2.39 -0.01 3.27 16 30 H 0.10 3.41 7.55 -2.39 -0.02 3.39 16 31 H 0.03 1.42 6.94 -2.39 -0.02 1.40 16 32 H 0.05 2.51 7.32 -2.39 -0.02 2.49 16 33 H 0.05 2.92 6.86 -2.39 -0.02 2.91 16 34 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 35 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.05 1.71 8.06 -2.39 -0.02 1.69 16 37 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.11 2.17 6.93 -2.38 -0.02 2.16 16 Total: -1.00 -66.09 305.75 4.83 -61.27 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 1.07 Total: 21.05 kcal Atomic # 6 Polarization: 27.11 SS G_CDS: 6.59 Total: 33.70 kcal Atomic # 7 Polarization: -85.91 SS G_CDS: -4.61 Total: -90.52 kcal Atomic # 8 Polarization: -64.60 SS G_CDS: -0.25 Total: -64.85 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.03 Total: 39.35 kcal Total: -66.09 4.83 -61.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824861670.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.014 kcal (2) G-P(sol) polarization free energy of solvation -66.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds