Wall clock time and date at job start Mon Mar 30 2020 01:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 C 1.53786 * 113.61318 * 279.14136 * 5 3 2 7 7 C 1.53962 * 87.01591 * 220.04760 * 6 5 3 8 8 N 1.46495 * 113.74175 * 139.94197 * 7 6 5 9 9 C 1.34777 * 120.00115 * 107.40205 * 8 7 6 10 10 O 1.21586 * 119.99814 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00215 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00195 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47468 * 180.02562 * 12 11 9 14 14 C 1.50702 * 109.47219 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99943 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99603 * 179.97438 * 14 13 12 17 17 N 1.31506 * 120.00053 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99517 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47092 * 59.99809 * 18 16 14 20 20 H 1.48502 * 109.46650 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46916 * 299.99757 * 18 16 14 22 22 C 1.53776 * 113.61608 * 181.53085 * 5 3 2 23 23 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 25 25 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 26 26 H 1.09000 * 112.84764 * 50.32711 * 5 3 2 27 27 H 1.08999 * 113.61104 * 334.56019 * 6 5 3 28 28 H 1.08994 * 113.61609 * 105.46844 * 6 5 3 29 29 H 1.09003 * 113.53334 * 270.80793 * 7 6 5 30 30 H 0.97003 * 120.00500 * 287.40048 * 8 7 6 31 31 H 0.97000 * 120.00042 * 0.02562 * 11 9 8 32 32 H 1.09004 * 109.47321 * 300.00586 * 12 11 9 33 33 H 1.09004 * 109.46891 * 60.00128 * 12 11 9 34 34 H 1.09004 * 109.47109 * 300.00448 * 13 12 11 35 35 H 1.09004 * 109.47179 * 60.00036 * 13 12 11 36 36 H 0.97006 * 119.99790 * 180.02562 * 17 16 14 37 37 H 1.08995 * 113.61513 * 254.52769 * 22 5 3 38 38 H 1.09003 * 113.61551 * 25.43259 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1926 1.0839 1.3921 7 6 5.1820 2.2005 1.0114 8 7 5.4735 3.1288 2.1065 9 6 6.6723 3.0908 2.7212 10 8 7.5118 2.2856 2.3671 11 7 6.9407 3.9452 3.7284 12 6 8.2436 3.9035 4.3968 13 6 8.2880 4.9682 5.4947 14 6 9.6285 4.9257 6.1819 15 1 10.3741 4.2105 5.8674 16 6 9.9030 5.7999 7.2122 17 7 8.9953 6.6711 7.5948 18 14 11.5644 5.7467 8.0645 19 1 12.6379 6.0118 7.0733 20 1 11.6074 6.7802 9.1300 21 1 11.7683 4.4053 8.6682 22 6 4.1077 2.7137 0.0381 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 4.0228 0.6566 -0.7723 27 1 3.5258 1.3522 2.2115 28 1 4.6631 0.1104 1.5292 29 1 6.0813 1.8347 0.5158 30 1 4.8037 3.7710 2.3894 31 1 6.2709 4.5873 4.0111 32 1 8.3934 2.9189 4.8398 33 1 9.0316 4.0982 3.6693 34 1 8.1380 5.9530 5.0520 35 1 7.5000 4.7731 6.2221 36 1 9.1886 7.2864 8.3194 37 1 4.5099 3.0540 -0.9161 38 1 3.4177 3.4284 0.4868 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875481139.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:47 Heat of formation + Delta-G solvation = -107.234226 kcal Electronic energy + Delta-G solvation = -19841.781904 eV Core-core repulsion = 16491.857715 eV Total energy + Delta-G solvation = -3349.924189 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.17241 -39.79550 -38.32531 -36.63946 -34.79277 -33.38316 -32.66948 -29.55540 -28.60244 -26.11370 -26.06495 -24.54263 -21.92478 -20.93915 -20.57924 -19.95878 -18.15699 -17.92842 -17.20095 -16.70231 -16.33938 -15.59147 -15.53853 -15.07334 -14.50479 -14.32239 -13.81031 -13.56723 -13.49937 -13.27219 -12.83538 -12.65994 -12.32550 -12.26934 -11.68870 -11.49944 -11.18310 -11.16817 -11.05653 -10.96680 -10.64702 -10.60489 -10.29859 -9.94204 -9.54300 -9.26348 -9.02863 -8.47641 -8.25271 -6.07893 -4.10579 1.83693 2.33112 3.08168 3.32478 3.36179 3.39942 3.51850 4.00029 4.10653 4.39558 4.46717 4.54886 4.66663 4.72428 4.74865 4.81184 5.15029 5.27598 5.29122 5.33677 5.40676 5.57819 5.65365 5.94766 6.02415 6.31325 6.40936 6.60576 6.78849 7.00295 7.23933 7.39939 7.57904 7.64661 7.91150 8.26918 8.43191 8.93545 8.99471 9.54026 11.03727 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.050329 B = 0.002547 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.204342 B =10991.221417 C =11175.183367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.473 3.527 4 O -0.506 6.506 5 C -0.110 4.110 6 C -0.136 4.136 7 C 0.149 3.851 8 N -0.742 5.742 9 C 0.699 3.301 10 O -0.598 6.598 11 N -0.738 5.738 12 C 0.140 3.860 13 C 0.013 3.987 14 C -0.521 4.521 15 H 0.059 0.941 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.898 3.102 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.127 4.127 23 H 0.101 0.899 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.130 0.870 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.122 0.878 30 H 0.396 0.604 31 H 0.393 0.607 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.262 0.738 37 H 0.086 0.914 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.478 -10.859 -15.791 25.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.316 3.684 4 O -0.394 6.394 5 C -0.130 4.130 6 C -0.176 4.176 7 C 0.042 3.958 8 N -0.397 5.397 9 C 0.399 3.601 10 O -0.477 6.477 11 N -0.391 5.391 12 C 0.017 3.983 13 C -0.025 4.025 14 C -0.560 4.560 15 H 0.077 0.923 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.725 3.275 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.166 4.166 23 H 0.120 0.880 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.148 0.852 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.140 0.860 30 H 0.230 0.770 31 H 0.227 0.773 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.908 -11.148 -15.950 25.134 hybrid contribution -0.148 0.678 0.783 1.046 sum -16.056 -10.470 -15.166 24.443 Atomic orbital electron populations 1.23284 0.76361 1.03761 1.02580 1.86531 1.23415 1.33527 1.83928 1.23600 0.91717 0.81260 0.71821 1.90669 1.67029 1.36437 1.45238 1.22344 0.87155 1.01269 1.02186 1.23550 0.98277 1.01630 0.94100 1.22169 0.97148 0.89227 0.87220 1.45089 1.16021 1.40499 1.38054 1.16108 0.82053 0.81848 0.80123 1.90881 1.47210 1.41522 1.68065 1.45556 1.19431 1.38033 1.36108 1.21597 0.80904 1.00978 0.94819 1.19323 0.98002 0.93010 0.92131 1.21018 0.99412 1.18497 1.17070 0.92255 1.25000 0.97215 0.95227 0.96885 1.69946 1.34034 1.20579 1.28803 0.86564 0.83999 0.77778 0.79139 1.20099 1.21280 1.20109 1.23404 0.97522 0.94518 1.01121 0.88042 0.91836 0.91903 0.85210 0.89207 0.89332 0.85982 0.76982 0.77349 0.92767 0.92746 0.95971 0.95990 0.92810 0.89517 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.28 16 2 O -0.36 -3.18 10.57 -39.27 -0.41 -3.60 16 3 C 0.47 4.59 7.48 36.01 0.27 4.86 16 4 O -0.51 -6.20 15.66 -18.75 -0.29 -6.50 16 5 C -0.11 -0.85 4.25 -90.96 -0.39 -1.24 16 6 C -0.14 -1.21 7.45 -25.82 -0.19 -1.40 16 7 C 0.15 1.52 4.24 -67.03 -0.28 1.24 16 8 N -0.74 -9.04 5.37 -57.79 -0.31 -9.35 16 9 C 0.70 11.95 8.57 -86.92 -0.74 11.21 16 10 O -0.60 -12.51 15.94 5.29 0.08 -12.43 16 11 N -0.74 -12.96 5.56 -65.22 -0.36 -13.32 16 12 C 0.14 3.00 5.61 -4.04 -0.02 2.98 16 13 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 14 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 15 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 18 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.13 -1.04 7.15 -25.92 -0.19 -1.23 16 23 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 25 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 26 H 0.13 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.12 1.39 7.46 -51.93 -0.39 1.00 16 30 H 0.40 3.88 8.74 -40.82 -0.36 3.52 16 31 H 0.39 5.94 8.49 -40.82 -0.35 5.59 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 0.89 7.43 -51.93 -0.39 0.51 16 LS Contribution 329.87 15.07 4.97 4.97 Total: -1.00 -34.10 329.87 -7.31 -41.40 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.66 Total: 3.26 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -1.03 Total: 4.62 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 0.06 Total: -48.14 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.62 Total: -22.52 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.10 -7.31 -41.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875481139.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.829 kcal (2) G-P(sol) polarization free energy of solvation -34.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds