Wall clock time and date at job start Mon Mar 30 2020 01:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 C 1.53786 * 113.61318 * 279.14136 * 5 3 2 7 7 C 1.53962 * 87.01591 * 220.04760 * 6 5 3 8 8 N 1.46495 * 113.74175 * 139.94197 * 7 6 5 9 9 C 1.34777 * 120.00115 * 107.40205 * 8 7 6 10 10 O 1.21586 * 119.99814 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00215 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00195 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47468 * 180.02562 * 12 11 9 14 14 C 1.50702 * 109.47219 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99943 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99603 * 179.97438 * 14 13 12 17 17 N 1.31506 * 120.00053 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99517 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47092 * 59.99809 * 18 16 14 20 20 H 1.48502 * 109.46650 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46916 * 299.99757 * 18 16 14 22 22 C 1.53776 * 113.61608 * 181.53085 * 5 3 2 23 23 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 25 25 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 26 26 H 1.09000 * 112.84764 * 50.32711 * 5 3 2 27 27 H 1.08999 * 113.61104 * 334.56019 * 6 5 3 28 28 H 1.08994 * 113.61609 * 105.46844 * 6 5 3 29 29 H 1.09003 * 113.53334 * 270.80793 * 7 6 5 30 30 H 0.97003 * 120.00500 * 287.40048 * 8 7 6 31 31 H 0.97000 * 120.00042 * 0.02562 * 11 9 8 32 32 H 1.09004 * 109.47321 * 300.00586 * 12 11 9 33 33 H 1.09004 * 109.46891 * 60.00128 * 12 11 9 34 34 H 1.09004 * 109.47109 * 300.00448 * 13 12 11 35 35 H 1.09004 * 109.47179 * 60.00036 * 13 12 11 36 36 H 0.97006 * 119.99790 * 180.02562 * 17 16 14 37 37 H 1.08995 * 113.61513 * 254.52769 * 22 5 3 38 38 H 1.09003 * 113.61551 * 25.43259 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1926 1.0839 1.3921 7 6 5.1820 2.2005 1.0114 8 7 5.4735 3.1288 2.1065 9 6 6.6723 3.0908 2.7212 10 8 7.5118 2.2856 2.3671 11 7 6.9407 3.9452 3.7284 12 6 8.2436 3.9035 4.3968 13 6 8.2880 4.9682 5.4947 14 6 9.6285 4.9257 6.1819 15 1 10.3741 4.2105 5.8674 16 6 9.9030 5.7999 7.2122 17 7 8.9953 6.6711 7.5948 18 14 11.5644 5.7467 8.0645 19 1 12.6379 6.0118 7.0733 20 1 11.6074 6.7802 9.1300 21 1 11.7683 4.4053 8.6682 22 6 4.1077 2.7137 0.0381 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 4.0228 0.6566 -0.7723 27 1 3.5258 1.3522 2.2115 28 1 4.6631 0.1104 1.5292 29 1 6.0813 1.8347 0.5158 30 1 4.8037 3.7710 2.3894 31 1 6.2709 4.5873 4.0111 32 1 8.3934 2.9189 4.8398 33 1 9.0316 4.0982 3.6693 34 1 8.1380 5.9530 5.0520 35 1 7.5000 4.7731 6.2221 36 1 9.1886 7.2864 8.3194 37 1 4.5099 3.0540 -0.9161 38 1 3.4177 3.4284 0.4868 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875481139.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:46 Heat of formation + Delta-G solvation = -131.245219 kcal Electronic energy + Delta-G solvation = -19842.823099 eV Core-core repulsion = 16491.857715 eV Total energy + Delta-G solvation = -3350.965383 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.94585 -40.97000 -39.27865 -37.41668 -36.51528 -34.87700 -34.31852 -31.34330 -29.28954 -27.17757 -26.76217 -26.18161 -23.22140 -22.44928 -21.80160 -20.76723 -19.25429 -18.92378 -18.40376 -17.94651 -17.40292 -16.74799 -16.62621 -16.49181 -16.16952 -15.43866 -15.09340 -15.04523 -14.40238 -14.30998 -14.19490 -13.58235 -13.47150 -13.20185 -12.98823 -12.88853 -12.53567 -12.41978 -12.28634 -12.20353 -11.81509 -11.74221 -11.65400 -11.48384 -11.36950 -11.15162 -10.58662 -10.26750 -9.69564 -8.22543 -6.32808 1.09598 1.43041 1.45668 1.53278 1.62562 1.94044 2.17041 2.42922 3.12260 3.29950 3.36991 3.43816 3.77145 3.83070 4.06983 4.29953 4.32041 4.47685 4.55083 4.57582 4.64461 4.69493 4.71222 4.89196 4.89416 4.98189 5.15989 5.34326 5.35578 5.53343 5.61478 5.61653 5.80856 6.07952 6.18920 6.68618 6.80508 7.14674 7.36445 7.62625 8.89158 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.050329 B = 0.002547 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.204342 B =10991.221417 C =11175.183367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.474 3.526 4 O -0.536 6.536 5 C -0.100 4.100 6 C -0.132 4.132 7 C 0.138 3.862 8 N -0.723 5.723 9 C 0.699 3.301 10 O -0.637 6.637 11 N -0.735 5.735 12 C 0.161 3.839 13 C 0.023 3.977 14 C -0.546 4.546 15 H 0.060 0.940 16 C 0.006 3.994 17 N -0.927 5.927 18 Si 0.966 3.034 19 H -0.268 1.268 20 H -0.282 1.282 21 H -0.268 1.268 22 C -0.117 4.117 23 H 0.130 0.870 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.156 0.844 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.410 0.590 31 H 0.406 0.594 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.008 0.992 35 H 0.008 0.992 36 H 0.265 0.735 37 H 0.102 0.898 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.740 -11.613 -16.466 26.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.319 3.681 4 O -0.426 6.426 5 C -0.119 4.119 6 C -0.171 4.171 7 C 0.032 3.968 8 N -0.378 5.378 9 C 0.399 3.601 10 O -0.519 6.519 11 N -0.389 5.389 12 C 0.036 3.964 13 C -0.014 4.014 14 C -0.585 4.585 15 H 0.078 0.922 16 C -0.193 4.193 17 N -0.567 5.567 18 Si 0.790 3.210 19 H -0.193 1.193 20 H -0.207 1.207 21 H -0.193 1.193 22 C -0.155 4.155 23 H 0.148 0.852 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.174 0.826 27 H 0.104 0.896 28 H 0.110 0.890 29 H 0.131 0.869 30 H 0.246 0.754 31 H 0.241 0.759 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.074 0.926 37 H 0.120 0.880 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.233 -11.909 -16.650 26.126 hybrid contribution -0.174 0.878 0.953 1.307 sum -16.407 -11.031 -15.697 25.244 Atomic orbital electron populations 1.23542 0.75014 1.05650 1.02460 1.86525 1.24830 1.33039 1.83502 1.23898 0.92306 0.81046 0.70900 1.90659 1.67806 1.37372 1.46752 1.22384 0.86101 1.01289 1.02116 1.23487 0.97699 1.01167 0.94766 1.22383 0.97549 0.89748 0.87095 1.44976 1.14490 1.40726 1.37638 1.16197 0.82958 0.81110 0.79863 1.90854 1.48859 1.42999 1.69141 1.45254 1.18474 1.38833 1.36372 1.21063 0.82597 0.99044 0.93668 1.19130 0.96541 0.93243 0.92508 1.21451 1.00635 1.18702 1.17705 0.92184 1.25886 1.01086 0.94746 0.97569 1.70054 1.36016 1.21237 1.29376 0.85492 0.79334 0.78095 0.78087 1.19291 1.20682 1.19309 1.23330 0.96310 0.94808 1.01048 0.85227 0.92236 0.91795 0.82622 0.89563 0.88953 0.86892 0.75367 0.75862 0.93784 0.93742 0.97372 0.97399 0.92575 0.87986 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.36 -5.83 10.57 -51.46 -0.54 -6.38 16 3 C 0.47 8.46 7.48 71.24 0.53 8.99 16 4 O -0.54 -12.57 15.66 21.98 0.34 -12.23 16 5 C -0.10 -1.33 4.25 -11.01 -0.05 -1.38 16 6 C -0.13 -2.12 7.45 31.18 0.23 -1.89 16 7 C 0.14 2.62 4.24 45.58 0.19 2.81 16 8 N -0.72 -16.80 5.37 -455.01 -2.44 -19.24 16 9 C 0.70 23.53 8.57 179.05 1.53 25.06 16 10 O -0.64 -26.57 15.94 -3.99 -0.06 -26.63 16 11 N -0.73 -25.64 5.56 -478.53 -2.66 -28.30 16 12 C 0.16 6.97 5.61 86.38 0.48 7.46 16 13 C 0.02 1.18 5.09 29.85 0.15 1.33 16 14 C -0.55 -30.62 9.11 25.60 0.23 -30.38 16 15 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 16 C 0.01 0.33 5.46 84.66 0.46 0.79 16 17 N -0.93 -54.56 13.29 21.45 0.28 -54.28 16 18 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 C -0.12 -1.68 7.15 31.12 0.22 -1.45 16 23 H 0.13 0.65 8.14 -2.38 -0.02 0.63 16 24 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 25 H 0.06 0.69 8.13 -2.39 -0.02 0.67 16 26 H 0.16 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.09 1.47 8.09 -2.39 -0.02 1.45 16 28 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.11 2.43 7.46 -2.39 -0.02 2.42 16 30 H 0.41 7.41 8.74 -92.71 -0.81 6.60 16 31 H 0.41 12.06 8.49 -92.71 -0.79 11.28 16 32 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 35 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 36 H 0.27 14.71 8.31 -92.70 -0.77 13.94 16 37 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.10 1.54 7.43 -2.39 -0.02 1.52 16 Total: -1.00 -72.80 329.87 1.62 -71.17 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -0.52 Total: 17.35 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: 5.20 Total: 12.83 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -4.82 Total: -101.82 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -0.26 Total: -45.23 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -72.80 1.62 -71.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875481139.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.071 kcal (2) G-P(sol) polarization free energy of solvation -72.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds