Wall clock time and date at job start Mon Mar 30 2020 01:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34232 * 117.00042 * 2 1 4 4 O 1.20829 * 119.99778 * 0.02562 * 3 2 1 5 5 C 1.50693 * 119.99900 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.46960 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.46989 * 179.97438 * 6 5 3 8 8 C 1.36940 * 119.99852 * 265.53518 * 7 6 5 9 9 H 1.07997 * 119.99614 * 146.51085 * 8 7 6 10 10 C 1.38810 * 120.00104 * 326.51225 * 8 7 6 11 11 N 1.31613 * 120.00177 * 337.27365 * 10 8 7 12 12 Si 1.86800 * 119.99768 * 157.27830 * 10 8 7 13 13 H 1.48500 * 109.47318 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47297 * 119.99911 * 12 10 8 15 15 H 1.48510 * 109.46885 * 239.99848 * 12 10 8 16 16 C 1.46495 * 120.00023 * 85.53889 * 7 6 5 17 17 H 1.09000 * 110.43419 * 358.91045 * 16 7 6 18 18 C 1.54632 * 110.60152 * 236.29583 * 16 7 6 19 19 C 1.54660 * 101.68510 * 216.25192 * 18 16 7 20 20 N 1.46767 * 105.37971 * 25.76525 * 19 18 16 21 21 C 1.46500 * 124.34723 * 162.85813 * 20 19 18 22 22 C 1.34417 * 111.30410 * 342.58744 * 20 19 18 23 23 O 1.21279 * 124.94334 * 180.65287 * 22 20 19 24 24 H 1.09001 * 109.46917 * 60.00126 * 1 2 3 25 25 H 1.08993 * 109.46984 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46910 * 300.00111 * 1 2 3 27 27 H 1.08990 * 109.47577 * 59.99969 * 5 3 2 28 28 H 1.09006 * 109.46999 * 299.99934 * 5 3 2 29 29 H 1.09006 * 109.47260 * 59.99865 * 6 5 3 30 30 H 1.08997 * 109.47117 * 299.99959 * 6 5 3 31 31 H 0.97004 * 120.00037 * 180.02562 * 11 10 8 32 32 H 1.09002 * 110.96446 * 334.58461 * 18 16 7 33 33 H 1.08996 * 110.96976 * 98.34091 * 18 16 7 34 34 H 1.08994 * 110.39635 * 266.73851 * 19 18 16 35 35 H 1.09001 * 110.17636 * 144.67556 * 19 18 16 36 36 H 1.09000 * 109.47266 * 179.72081 * 21 20 19 37 37 H 1.09005 * 109.47117 * 299.72348 * 21 20 19 38 38 H 1.08999 * 109.47641 * 59.72128 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7421 0.0002 7 7 5.4632 2.8187 0.0002 8 6 6.1421 2.9461 1.1827 9 1 7.1129 2.4877 1.3000 10 6 5.5825 3.6644 2.2304 11 7 4.6621 4.5733 1.9876 12 14 6.1358 3.3409 3.9850 13 1 7.1732 2.2784 3.9890 14 1 6.7003 4.5866 4.5637 15 1 4.9733 2.9002 4.7974 16 6 6.1998 2.7592 -1.2646 17 1 5.5111 2.6387 -2.1008 18 6 7.2292 1.6055 -1.2410 19 6 8.4052 2.2186 -2.0367 20 7 8.2725 3.6708 -1.8705 21 6 9.3428 4.6346 -2.1382 22 6 7.0410 4.0033 -1.4466 23 8 6.6599 5.1359 -1.2396 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.9557 0.7810 -0.8907 28 1 3.9564 0.7805 0.8892 29 1 3.6108 3.2357 0.8907 30 1 3.6101 3.2368 -0.8893 31 1 4.2713 5.0755 2.7198 32 1 7.5259 1.3685 -0.2192 33 1 6.8376 0.7229 -1.7465 34 1 8.3309 1.9513 -3.0908 35 1 9.3554 1.8772 -1.6262 36 1 8.9812 5.6436 -1.9401 37 1 10.1945 4.4205 -1.4925 38 1 9.6492 4.5569 -3.1814 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879476175.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:48 Heat of formation + Delta-G solvation = -86.922205 kcal Electronic energy + Delta-G solvation = -21658.734066 eV Core-core repulsion = 18309.690672 eV Total energy + Delta-G solvation = -3349.043393 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.95764 -39.54640 -36.29468 -35.61889 -35.25349 -32.01511 -31.49221 -29.48731 -27.40404 -26.45099 -25.74754 -24.43567 -22.02826 -20.71012 -19.94835 -18.72176 -17.30639 -16.57520 -16.17102 -15.99459 -15.86622 -15.60249 -15.01076 -14.31312 -13.81912 -13.63629 -13.29377 -13.06823 -12.91645 -12.67201 -12.22716 -12.10587 -11.97295 -11.90224 -11.66313 -11.36421 -11.14670 -10.98632 -10.77610 -10.58245 -10.48967 -10.13074 -10.03761 -9.88334 -9.70139 -9.00180 -8.40858 -8.07684 -6.69154 -5.80959 -3.38772 2.75180 3.13939 3.34866 3.42848 3.45038 3.54548 3.73246 4.44260 5.09233 5.15491 5.21620 5.27241 5.33312 5.38893 5.40181 5.57701 5.67311 5.71384 5.77088 5.83777 5.91108 5.97356 6.07183 6.10550 6.17043 6.42411 6.47295 6.72852 6.79943 7.01186 7.19030 7.72716 7.77378 7.85149 8.25723 8.43171 9.09163 9.17315 9.72306 10.26184 11.19616 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.014818 B = 0.007043 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.089314 B = 3974.424151 C = 5103.012561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.370 6.370 3 C 0.460 3.540 4 O -0.505 6.505 5 C -0.130 4.130 6 C 0.157 3.843 7 N -0.552 5.552 8 C -0.276 4.276 9 H 0.068 0.932 10 C 0.019 3.981 11 N -0.864 5.864 12 Si 0.896 3.104 13 H -0.275 1.275 14 H -0.289 1.289 15 H -0.286 1.286 16 C 0.140 3.860 17 H 0.085 0.915 18 C -0.147 4.147 19 C 0.112 3.888 20 N -0.639 5.639 21 C 0.099 3.901 22 C 0.508 3.492 23 O -0.511 6.511 24 H 0.058 0.942 25 H 0.093 0.907 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.035 0.965 31 H 0.256 0.744 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.740 -10.180 -7.369 12.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.287 6.287 3 C 0.303 3.697 4 O -0.392 6.392 5 C -0.170 4.170 6 C 0.031 3.969 7 N -0.270 5.270 8 C -0.405 4.405 9 H 0.086 0.914 10 C -0.183 4.183 11 N -0.504 5.504 12 Si 0.725 3.275 13 H -0.199 1.199 14 H -0.216 1.216 15 H -0.213 1.213 16 C 0.028 3.972 17 H 0.103 0.897 18 C -0.187 4.187 19 C -0.012 4.012 20 N -0.378 5.378 21 C -0.044 4.044 22 C 0.294 3.706 23 O -0.383 6.383 24 H 0.077 0.923 25 H 0.112 0.888 26 H 0.078 0.922 27 H 0.105 0.895 28 H 0.121 0.879 29 H 0.131 0.869 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.232 -9.035 -7.133 11.578 hybrid contribution 0.229 -0.064 0.896 0.927 sum 1.461 -9.099 -6.237 11.128 Atomic orbital electron populations 1.23135 0.77749 1.02829 1.02238 1.86564 1.22505 1.34903 1.84771 1.24473 0.92820 0.80735 0.71707 1.90655 1.67342 1.36259 1.44952 1.22387 0.84616 1.05509 1.04491 1.20876 0.83051 0.88796 1.04210 1.43682 1.01032 1.82448 0.99842 1.18950 1.04031 1.28581 0.88962 0.91450 1.25190 0.99124 0.94703 0.99301 1.70056 1.29198 1.20340 1.30824 0.86358 0.78217 0.77849 0.85110 1.19941 1.21593 1.21281 1.21241 0.92909 0.91140 0.91951 0.89723 1.23099 0.95367 0.98443 1.01745 1.21937 0.99704 0.80311 0.99266 1.48278 1.13384 1.07117 1.69020 1.21367 0.89918 0.93838 0.99295 1.22193 0.82114 0.92056 0.74254 1.90654 1.75144 1.23640 1.48848 0.92345 0.88816 0.92243 0.89533 0.87909 0.86937 0.94674 0.93342 0.88927 0.90602 0.92389 0.91743 0.90507 0.93131 0.93313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 101.05 1.07 1.49 16 2 O -0.37 -5.88 10.57 -39.26 -0.41 -6.30 16 3 C 0.46 8.60 7.96 36.00 0.29 8.89 16 4 O -0.51 -11.02 15.73 -18.75 -0.29 -11.31 16 5 C -0.13 -2.41 6.13 -27.88 -0.17 -2.58 16 6 C 0.16 3.68 4.50 -4.04 -0.02 3.66 16 7 N -0.55 -13.13 2.48 -165.67 -0.41 -13.54 16 8 C -0.28 -7.23 8.45 -15.06 -0.13 -7.35 16 9 H 0.07 1.73 6.63 -52.49 -0.35 1.39 16 10 C 0.02 0.54 4.92 -17.43 -0.09 0.45 16 11 N -0.86 -25.60 11.33 55.49 0.63 -24.97 16 12 Si 0.90 21.41 29.61 -169.99 -5.03 16.38 16 13 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 16 C 0.14 2.82 3.46 -67.94 -0.23 2.58 16 17 H 0.08 1.57 7.92 -51.93 -0.41 1.16 16 18 C -0.15 -2.28 6.76 -25.00 -0.17 -2.45 16 19 C 0.11 1.54 7.36 -3.02 -0.02 1.51 16 20 N -0.64 -11.32 3.33 -180.17 -0.60 -11.92 16 21 C 0.10 1.46 11.14 59.85 0.67 2.12 16 22 C 0.51 11.42 7.08 -10.86 -0.08 11.34 16 23 O -0.51 -14.09 17.34 5.56 0.10 -14.00 16 24 H 0.06 0.70 8.13 -51.93 -0.42 0.27 16 25 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 27 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 29 H 0.11 3.09 5.27 -51.93 -0.27 2.82 16 30 H 0.03 0.84 8.00 -51.93 -0.42 0.42 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.09 1.60 6.35 -51.93 -0.33 1.27 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.28 7.53 -51.93 -0.39 0.88 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 321.45 15.07 4.84 4.84 Total: -1.00 -34.69 321.45 -5.60 -40.30 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -5.53 Total: 0.85 kcal Atomic # 6 Polarization: 18.56 SS G_CDS: 1.11 Total: 19.67 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.38 Total: -50.43 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.61 Total: -31.61 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.69 -5.60 -40.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879476175.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.627 kcal (2) G-P(sol) polarization free energy of solvation -34.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds