Wall clock time and date at job start Mon Mar 30 2020 01:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34232 * 117.00042 * 2 1 4 4 O 1.20829 * 119.99778 * 0.02562 * 3 2 1 5 5 C 1.50693 * 119.99900 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.46960 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.46989 * 179.97438 * 6 5 3 8 8 C 1.36940 * 119.99852 * 265.53518 * 7 6 5 9 9 H 1.07997 * 119.99614 * 146.51085 * 8 7 6 10 10 C 1.38810 * 120.00104 * 326.51225 * 8 7 6 11 11 N 1.31613 * 120.00177 * 337.27365 * 10 8 7 12 12 Si 1.86800 * 119.99768 * 157.27830 * 10 8 7 13 13 H 1.48500 * 109.47318 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47297 * 119.99911 * 12 10 8 15 15 H 1.48510 * 109.46885 * 239.99848 * 12 10 8 16 16 C 1.46495 * 120.00023 * 85.53889 * 7 6 5 17 17 H 1.09000 * 110.43419 * 358.91045 * 16 7 6 18 18 C 1.54632 * 110.60152 * 236.29583 * 16 7 6 19 19 C 1.54660 * 101.68510 * 216.25192 * 18 16 7 20 20 N 1.46767 * 105.37971 * 25.76525 * 19 18 16 21 21 C 1.46500 * 124.34723 * 162.85813 * 20 19 18 22 22 C 1.34417 * 111.30410 * 342.58744 * 20 19 18 23 23 O 1.21279 * 124.94334 * 180.65287 * 22 20 19 24 24 H 1.09001 * 109.46917 * 60.00126 * 1 2 3 25 25 H 1.08993 * 109.46984 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46910 * 300.00111 * 1 2 3 27 27 H 1.08990 * 109.47577 * 59.99969 * 5 3 2 28 28 H 1.09006 * 109.46999 * 299.99934 * 5 3 2 29 29 H 1.09006 * 109.47260 * 59.99865 * 6 5 3 30 30 H 1.08997 * 109.47117 * 299.99959 * 6 5 3 31 31 H 0.97004 * 120.00037 * 180.02562 * 11 10 8 32 32 H 1.09002 * 110.96446 * 334.58461 * 18 16 7 33 33 H 1.08996 * 110.96976 * 98.34091 * 18 16 7 34 34 H 1.08994 * 110.39635 * 266.73851 * 19 18 16 35 35 H 1.09001 * 110.17636 * 144.67556 * 19 18 16 36 36 H 1.09000 * 109.47266 * 179.72081 * 21 20 19 37 37 H 1.09005 * 109.47117 * 299.72348 * 21 20 19 38 38 H 1.08999 * 109.47641 * 59.72128 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7421 0.0002 7 7 5.4632 2.8187 0.0002 8 6 6.1421 2.9461 1.1827 9 1 7.1129 2.4877 1.3000 10 6 5.5825 3.6644 2.2304 11 7 4.6621 4.5733 1.9876 12 14 6.1358 3.3409 3.9850 13 1 7.1732 2.2784 3.9890 14 1 6.7003 4.5866 4.5637 15 1 4.9733 2.9002 4.7974 16 6 6.1998 2.7592 -1.2646 17 1 5.5111 2.6387 -2.1008 18 6 7.2292 1.6055 -1.2410 19 6 8.4052 2.2186 -2.0367 20 7 8.2725 3.6708 -1.8705 21 6 9.3428 4.6346 -2.1382 22 6 7.0410 4.0033 -1.4466 23 8 6.6599 5.1359 -1.2396 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.9557 0.7810 -0.8907 28 1 3.9564 0.7805 0.8892 29 1 3.6108 3.2357 0.8907 30 1 3.6101 3.2368 -0.8893 31 1 4.2713 5.0755 2.7198 32 1 7.5259 1.3685 -0.2192 33 1 6.8376 0.7229 -1.7465 34 1 8.3309 1.9513 -3.0908 35 1 9.3554 1.8772 -1.6262 36 1 8.9812 5.6436 -1.9401 37 1 10.1945 4.4205 -1.4925 38 1 9.6492 4.5569 -3.1814 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879476175.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:47 Heat of formation + Delta-G solvation = -111.414605 kcal Electronic energy + Delta-G solvation = -21659.796136 eV Core-core repulsion = 18309.690672 eV Total energy + Delta-G solvation = -3350.105464 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.41937 -41.08116 -37.84600 -37.28744 -36.88828 -33.77382 -33.11000 -31.04379 -28.58867 -27.96578 -27.23232 -26.09589 -23.59996 -22.20629 -21.48001 -20.32355 -18.88968 -18.20308 -17.62638 -17.41413 -17.32573 -17.14889 -16.76989 -16.00118 -15.30249 -15.18497 -14.75984 -14.57178 -14.31420 -14.22931 -13.80684 -13.62007 -13.34153 -13.17912 -13.06281 -12.85716 -12.74007 -12.64802 -12.40385 -12.32099 -11.96737 -11.77539 -11.61694 -11.51886 -11.40505 -10.84488 -10.35377 -9.46919 -8.61931 -7.82802 -5.43313 1.27376 1.43950 1.46276 1.56856 1.76199 1.95753 2.37013 2.51010 3.25875 3.56633 3.84649 3.97714 4.08487 4.31707 4.34683 4.35725 4.36334 4.43241 4.51765 4.58618 4.62822 4.72791 4.80490 4.82871 4.85047 4.88501 5.19765 5.27185 5.44137 5.45839 5.69785 5.81907 5.90042 6.33269 6.43283 6.83752 7.11386 7.53376 7.79772 8.30472 9.15112 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.014818 B = 0.007043 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.089314 B = 3974.424151 C = 5103.012561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.465 3.535 4 O -0.546 6.546 5 C -0.113 4.113 6 C 0.162 3.838 7 N -0.566 5.566 8 C -0.260 4.260 9 H 0.075 0.925 10 C -0.043 4.043 11 N -0.913 5.913 12 Si 0.955 3.045 13 H -0.252 1.252 14 H -0.303 1.303 15 H -0.289 1.289 16 C 0.127 3.873 17 H 0.098 0.902 18 C -0.131 4.131 19 C 0.110 3.890 20 N -0.636 5.636 21 C 0.093 3.907 22 C 0.489 3.511 23 O -0.583 6.583 24 H 0.060 0.940 25 H 0.137 0.863 26 H 0.053 0.947 27 H 0.124 0.876 28 H 0.108 0.892 29 H 0.069 0.931 30 H 0.014 0.986 31 H 0.246 0.754 32 H 0.076 0.924 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.502 -13.878 -8.698 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.310 3.690 4 O -0.436 6.436 5 C -0.153 4.153 6 C 0.035 3.965 7 N -0.285 5.285 8 C -0.390 4.390 9 H 0.093 0.907 10 C -0.241 4.241 11 N -0.556 5.556 12 Si 0.783 3.217 13 H -0.176 1.176 14 H -0.231 1.231 15 H -0.216 1.216 16 C 0.016 3.984 17 H 0.116 0.884 18 C -0.170 4.170 19 C -0.012 4.012 20 N -0.372 5.372 21 C -0.049 4.049 22 C 0.276 3.724 23 O -0.462 6.462 24 H 0.079 0.921 25 H 0.155 0.845 26 H 0.071 0.929 27 H 0.142 0.858 28 H 0.126 0.874 29 H 0.087 0.913 30 H 0.033 0.967 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.136 0.864 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.064 -12.841 -8.502 15.703 hybrid contribution -0.300 1.031 1.159 1.580 sum 2.764 -11.810 -7.343 14.179 Atomic orbital electron populations 1.23517 0.75396 1.05630 1.02127 1.86524 1.24673 1.32809 1.83976 1.24385 0.92892 0.80954 0.70763 1.90654 1.68163 1.37793 1.46953 1.22018 0.84910 1.01973 1.06412 1.20553 0.83255 0.91582 1.01113 1.43836 1.01091 1.82864 1.00710 1.19249 1.03720 1.26335 0.89702 0.90707 1.25961 0.99996 0.95093 1.03005 1.70255 1.31686 1.22510 1.31109 0.85408 0.78015 0.77454 0.80786 1.17563 1.23089 1.21579 1.21601 0.93914 0.92115 0.90725 0.88384 1.23029 0.94228 0.97858 1.01884 1.22291 1.00157 0.77234 1.01494 1.48424 1.12300 1.09564 1.66867 1.21569 0.89350 0.91829 1.02136 1.22667 0.84104 0.91655 0.73970 1.90613 1.76946 1.26259 1.52357 0.92113 0.84506 0.92862 0.85848 0.87429 0.91284 0.96749 0.94459 0.90550 0.86409 0.88559 0.88940 0.93514 0.90972 0.89531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.79 16 2 O -0.36 -10.80 10.57 -51.43 -0.54 -11.34 16 3 C 0.47 17.15 7.96 71.23 0.57 17.72 16 4 O -0.55 -24.40 15.73 21.95 0.35 -24.05 16 5 C -0.11 -4.08 6.13 29.85 0.18 -3.90 16 6 C 0.16 7.78 4.50 86.38 0.39 8.17 16 7 N -0.57 -27.05 2.48 -678.06 -1.68 -28.74 16 8 C -0.26 -13.69 8.45 84.03 0.71 -12.98 16 9 H 0.08 3.77 6.63 -2.91 -0.02 3.75 16 10 C -0.04 -2.43 4.92 84.86 0.42 -2.01 16 11 N -0.91 -57.19 11.33 21.65 0.25 -56.94 16 12 Si 0.96 45.07 29.61 68.60 2.03 47.10 16 13 H -0.25 -10.80 7.11 99.48 0.71 -10.10 16 14 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 15 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 16 C 0.13 4.97 3.46 44.99 0.16 5.12 16 17 H 0.10 3.49 7.92 -2.39 -0.02 3.47 16 18 C -0.13 -3.51 6.76 31.72 0.21 -3.30 16 19 C 0.11 2.47 7.36 86.89 0.64 3.11 16 20 N -0.64 -20.99 3.33 -842.53 -2.81 -23.80 16 21 C 0.09 2.54 11.14 127.77 1.42 3.97 16 22 C 0.49 22.01 7.08 87.90 0.62 22.63 16 23 O -0.58 -33.77 17.34 -3.03 -0.05 -33.82 16 24 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 25 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.05 1.28 8.13 -2.39 -0.02 1.26 16 27 H 0.12 3.52 8.14 -2.39 -0.02 3.50 16 28 H 0.11 3.82 8.14 -2.38 -0.02 3.80 16 29 H 0.07 4.01 5.27 -2.38 -0.01 4.00 16 30 H 0.01 0.71 8.00 -2.39 -0.02 0.70 16 31 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 32 H 0.08 2.35 6.35 -2.39 -0.02 2.33 16 33 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.05 1.56 7.53 -2.39 -0.02 1.54 16 37 H 0.07 1.67 8.14 -2.38 -0.02 1.66 16 38 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -82.84 321.45 5.11 -77.73 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 1.05 Total: 13.53 kcal Atomic # 6 Polarization: 33.81 SS G_CDS: 6.52 Total: 40.33 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -4.24 Total: -109.48 kcal Atomic # 8 Polarization: -68.96 SS G_CDS: -0.25 Total: -69.21 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -82.84 5.11 -77.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879476175.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.683 kcal (2) G-P(sol) polarization free energy of solvation -82.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds