Wall clock time and date at job start Mon Mar 30 2020 01:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99742 * 2 1 4 4 C 1.52998 * 109.47084 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47188 * 54.99987 * 4 3 2 6 6 O 1.42900 * 109.47427 * 295.00012 * 4 3 2 7 7 C 1.42894 * 114.00401 * 149.99754 * 6 4 3 8 8 C 1.50694 * 109.47289 * 175.00040 * 4 3 2 9 9 N 1.29948 * 126.29197 * 74.69029 * 8 4 3 10 10 O 1.21300 * 110.25610 * 179.84373 * 9 8 4 11 11 C 1.33646 * 109.80757 * 0.42179 * 10 9 8 12 12 C 1.50704 * 126.54897 * 179.75779 * 11 10 9 13 13 C 1.52999 * 109.46995 * 269.97697 * 12 11 10 14 14 C 1.53003 * 109.46970 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47162 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00082 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99918 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00257 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99941 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46900 * 90.00087 * 19 17 15 21 21 H 1.48498 * 109.47137 * 209.99657 * 19 17 15 22 22 H 1.48493 * 109.47047 * 330.00480 * 19 17 15 23 23 N 1.31123 * 106.89844 * 359.74270 * 11 10 9 24 24 H 1.09001 * 109.47103 * 60.00503 * 1 2 3 25 25 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47187 * 300.00063 * 1 2 3 27 27 H 1.08997 * 109.47450 * 299.99752 * 3 2 1 28 28 H 1.09003 * 109.47048 * 59.99889 * 3 2 1 29 29 H 1.09001 * 109.47213 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.46955 * 300.00108 * 7 6 4 31 31 H 1.08996 * 109.47110 * 60.00232 * 7 6 4 32 32 H 1.08996 * 109.46831 * 29.97628 * 12 11 10 33 33 H 1.08993 * 109.47022 * 149.97605 * 12 11 10 34 34 H 1.09002 * 109.47546 * 300.00000 * 13 12 11 35 35 H 1.09001 * 109.47311 * 60.00443 * 13 12 11 36 36 H 1.09010 * 109.46921 * 299.99950 * 14 13 12 37 37 H 1.08993 * 109.47105 * 59.99872 * 14 13 12 38 38 H 0.96998 * 120.00173 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8515 0.5683 -0.8409 6 8 3.9649 0.5797 1.2220 7 6 5.1682 -0.1815 1.1019 8 6 4.1480 2.5560 -0.1232 9 7 4.2145 3.4559 0.8118 10 8 4.7698 4.4516 0.3976 11 6 5.1128 4.2794 -0.8825 12 6 5.8159 5.2782 -1.7654 13 6 4.7784 6.1481 -2.4779 14 6 5.4922 7.1617 -3.3747 15 6 4.4703 8.0182 -4.0771 16 1 3.4172 7.8562 -3.9011 17 6 4.8800 9.0093 -4.9435 18 7 6.1625 9.2077 -5.1567 19 14 3.6133 10.0706 -5.8146 20 1 3.3129 11.2647 -4.9845 21 1 4.1507 10.5042 -7.1293 22 1 2.3694 9.2866 -6.0224 23 7 4.7211 3.0754 -1.2235 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 1.6885 1.8464 0.8900 29 1 5.4267 -0.6079 2.0711 30 1 5.0195 -0.9846 0.3800 31 1 5.9760 0.4669 0.7627 32 1 6.4627 5.9094 -1.1563 33 1 6.4165 4.7494 -2.5054 34 1 4.1315 5.5169 -3.0871 35 1 4.1778 6.6770 -1.7379 36 1 6.1394 7.7931 -2.7659 37 1 6.0926 6.6326 -4.1147 38 1 6.4507 9.9052 -5.7660 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896657754.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:36 Heat of formation + Delta-G solvation = -36.947515 kcal Electronic energy + Delta-G solvation = -20227.208201 eV Core-core repulsion = 16880.331872 eV Total energy + Delta-G solvation = -3346.876328 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.52718 -39.06456 -37.48686 -35.94432 -35.05953 -33.06095 -31.63309 -30.51120 -27.81053 -27.06861 -26.44204 -24.45181 -24.30496 -22.91411 -21.04346 -20.33196 -18.06502 -17.73402 -17.12765 -16.64708 -16.29035 -16.09555 -15.57473 -15.47175 -14.76929 -14.48597 -14.39875 -13.97244 -13.32050 -12.71503 -12.65061 -12.55815 -12.36926 -12.12027 -11.67524 -11.60657 -11.49041 -11.30987 -10.97880 -10.92225 -10.87509 -10.61580 -10.26309 -10.00723 -9.95404 -9.87300 -9.43994 -9.15719 -8.40747 -6.05989 -4.08626 1.22199 2.15422 2.92328 3.01420 3.29393 3.36014 3.39290 3.41020 3.88535 4.17393 4.42090 4.62705 4.73089 4.98749 5.03881 5.10075 5.11806 5.15705 5.20195 5.30414 5.35293 5.38977 5.43676 5.47527 5.58500 5.64751 5.97794 6.04627 6.44677 6.58978 6.72140 6.77827 6.90836 7.57357 7.68768 7.92322 8.22306 8.33668 8.97556 9.56013 11.05285 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024804 B = 0.003294 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.556579 B = 8498.922892 C = 9299.464149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.072 3.928 4 C 0.190 3.810 5 H 0.103 0.897 6 O -0.361 6.361 7 C 0.029 3.971 8 C 0.133 3.867 9 N -0.364 5.364 10 O 0.079 5.921 11 C 0.206 3.794 12 C -0.033 4.033 13 C -0.107 4.107 14 C 0.023 3.977 15 C -0.523 4.523 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 N -0.484 5.484 24 H 0.043 0.957 25 H 0.089 0.911 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.040 0.960 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.735 -17.155 10.804 20.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.302 6.302 3 C -0.006 4.006 4 C 0.129 3.871 5 H 0.120 0.880 6 O -0.278 6.278 7 C -0.067 4.067 8 C -0.141 4.141 9 N -0.072 5.072 10 O 0.018 5.982 11 C -0.013 4.013 12 C -0.072 4.072 13 C -0.145 4.145 14 C -0.014 4.014 15 C -0.561 4.561 16 H 0.074 0.926 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.720 3.280 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 N -0.218 5.218 24 H 0.062 0.938 25 H 0.107 0.893 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.109 0.891 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.119 0.881 33 H 0.126 0.874 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.040 0.960 37 H 0.039 0.961 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.985 -17.717 11.433 21.667 hybrid contribution -0.534 1.016 -0.804 1.401 sum -5.519 -16.701 10.630 20.552 Atomic orbital electron populations 1.22780 0.80381 1.02980 1.00306 1.87853 1.20116 1.26667 1.95518 1.22473 0.90384 0.85735 1.02000 1.19953 0.92488 0.84867 0.89759 0.87962 1.88028 1.42344 1.66968 1.30435 1.22880 0.86232 0.94617 1.02996 1.26091 1.01966 0.99824 0.86223 1.74632 1.14397 0.95153 1.23010 1.85335 1.53574 1.32670 1.26602 1.29401 0.94781 0.93532 0.83619 1.20687 0.98272 0.93021 0.95259 1.21748 0.96723 0.97285 0.98787 1.19105 0.95814 0.92651 0.93839 1.21192 0.93092 1.16415 1.25414 0.92632 1.25003 0.95240 0.97367 0.96731 1.69948 1.13968 1.32751 1.36688 0.86586 0.81618 0.80714 0.79054 1.20619 1.21183 1.19873 1.71914 1.16383 1.07298 1.26226 0.93793 0.89297 0.93825 0.91100 0.91641 0.89078 0.93192 0.94145 0.88119 0.87356 0.92329 0.92495 0.96048 0.96054 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.43 10.67 -40.08 -0.43 -4.86 16 3 C 0.07 0.85 5.58 37.16 0.21 1.06 16 4 C 0.19 2.46 2.94 -27.89 -0.08 2.38 16 5 H 0.10 1.21 7.79 -51.93 -0.40 0.81 16 6 O -0.36 -4.76 10.30 -40.08 -0.41 -5.17 16 7 C 0.03 0.29 10.81 101.05 1.09 1.38 16 8 C 0.13 2.02 7.06 -156.37 -1.10 0.91 16 9 N -0.36 -5.91 12.16 30.90 0.38 -5.53 16 10 O 0.08 1.25 11.31 18.09 0.20 1.45 16 11 C 0.21 3.19 7.77 -13.06 -0.10 3.09 16 12 C -0.03 -0.50 5.84 -27.88 -0.16 -0.66 16 13 C -0.11 -2.00 5.14 -26.73 -0.14 -2.14 16 14 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 15 C -0.52 -14.23 9.11 -34.44 -0.31 -14.55 16 16 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 19 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 N -0.48 -7.76 11.55 -9.86 -0.11 -7.87 16 24 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.42 8.09 -51.93 -0.42 0.00 16 31 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.02 0.53 8.14 -51.92 -0.42 0.10 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 333.58 15.07 5.03 5.03 Total: -1.00 -31.27 333.58 -5.22 -36.49 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: -5.86 Total: -5.18 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 0.28 Total: -5.22 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 1.00 Total: -38.68 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: -0.64 Total: -8.58 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.27 -5.22 -36.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896657754.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.457 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds