Wall clock time and date at job start Mon Mar 30 2020 01:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99742 * 2 1 4 4 C 1.52998 * 109.47084 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47188 * 54.99987 * 4 3 2 6 6 O 1.42900 * 109.47427 * 295.00012 * 4 3 2 7 7 C 1.42894 * 114.00401 * 149.99754 * 6 4 3 8 8 C 1.50694 * 109.47289 * 175.00040 * 4 3 2 9 9 N 1.29948 * 126.29197 * 74.69029 * 8 4 3 10 10 O 1.21300 * 110.25610 * 179.84373 * 9 8 4 11 11 C 1.33646 * 109.80757 * 0.42179 * 10 9 8 12 12 C 1.50704 * 126.54897 * 179.75779 * 11 10 9 13 13 C 1.52999 * 109.46995 * 269.97697 * 12 11 10 14 14 C 1.53003 * 109.46970 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47162 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00082 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99918 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00257 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99941 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46900 * 90.00087 * 19 17 15 21 21 H 1.48498 * 109.47137 * 209.99657 * 19 17 15 22 22 H 1.48493 * 109.47047 * 330.00480 * 19 17 15 23 23 N 1.31123 * 106.89844 * 359.74270 * 11 10 9 24 24 H 1.09001 * 109.47103 * 60.00503 * 1 2 3 25 25 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47187 * 300.00063 * 1 2 3 27 27 H 1.08997 * 109.47450 * 299.99752 * 3 2 1 28 28 H 1.09003 * 109.47048 * 59.99889 * 3 2 1 29 29 H 1.09001 * 109.47213 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.46955 * 300.00108 * 7 6 4 31 31 H 1.08996 * 109.47110 * 60.00232 * 7 6 4 32 32 H 1.08996 * 109.46831 * 29.97628 * 12 11 10 33 33 H 1.08993 * 109.47022 * 149.97605 * 12 11 10 34 34 H 1.09002 * 109.47546 * 300.00000 * 13 12 11 35 35 H 1.09001 * 109.47311 * 60.00443 * 13 12 11 36 36 H 1.09010 * 109.46921 * 299.99950 * 14 13 12 37 37 H 1.08993 * 109.47105 * 59.99872 * 14 13 12 38 38 H 0.96998 * 120.00173 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8515 0.5683 -0.8409 6 8 3.9649 0.5797 1.2220 7 6 5.1682 -0.1815 1.1019 8 6 4.1480 2.5560 -0.1232 9 7 4.2145 3.4559 0.8118 10 8 4.7698 4.4516 0.3976 11 6 5.1128 4.2794 -0.8825 12 6 5.8159 5.2782 -1.7654 13 6 4.7784 6.1481 -2.4779 14 6 5.4922 7.1617 -3.3747 15 6 4.4703 8.0182 -4.0771 16 1 3.4172 7.8562 -3.9011 17 6 4.8800 9.0093 -4.9435 18 7 6.1625 9.2077 -5.1567 19 14 3.6133 10.0706 -5.8146 20 1 3.3129 11.2647 -4.9845 21 1 4.1507 10.5042 -7.1293 22 1 2.3694 9.2866 -6.0224 23 7 4.7211 3.0754 -1.2235 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 1.6885 1.8464 0.8900 29 1 5.4267 -0.6079 2.0711 30 1 5.0195 -0.9846 0.3800 31 1 5.9760 0.4669 0.7627 32 1 6.4627 5.9094 -1.1563 33 1 6.4165 4.7494 -2.5054 34 1 4.1315 5.5169 -3.0871 35 1 4.1778 6.6770 -1.7379 36 1 6.1394 7.7931 -2.7659 37 1 6.0926 6.6326 -4.1147 38 1 6.4507 9.9052 -5.7660 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896657754.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:36 Heat of formation + Delta-G solvation = -58.966331 kcal Electronic energy + Delta-G solvation = -20228.163008 eV Core-core repulsion = 16880.331872 eV Total energy + Delta-G solvation = -3347.831136 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -46.75045 -39.98525 -38.33773 -37.26001 -36.48767 -34.80592 -33.12254 -31.58659 -29.48699 -27.80788 -27.26258 -26.03718 -25.46966 -24.20737 -22.47651 -21.74181 -19.27250 -18.93052 -18.41654 -18.00486 -17.55845 -16.98200 -16.56044 -16.42351 -16.34114 -16.03388 -15.54037 -15.04587 -14.38134 -14.28054 -14.04123 -13.71747 -13.44679 -13.31167 -13.12186 -12.84516 -12.64440 -12.53524 -12.44057 -12.40826 -12.28066 -12.09206 -11.54974 -11.51988 -11.29092 -11.16361 -10.89646 -10.80705 -10.51092 -8.17396 -6.26743 0.00089 0.96197 1.43185 1.43500 1.54207 1.73016 2.01757 2.43840 2.47378 2.91808 3.06414 3.17005 3.66984 3.80249 3.93822 4.17598 4.21393 4.24291 4.27516 4.36399 4.42483 4.46019 4.50894 4.53504 4.71840 4.72250 4.76453 4.82331 4.97912 5.03391 5.20466 5.55088 5.77130 5.84038 5.88901 5.99609 6.27878 6.89716 7.01452 7.42078 8.94002 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024804 B = 0.003294 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.556579 B = 8498.922892 C = 9299.464149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.398 6.398 3 C 0.076 3.924 4 C 0.188 3.812 5 H 0.112 0.888 6 O -0.378 6.378 7 C 0.024 3.976 8 C 0.137 3.863 9 N -0.380 5.380 10 O 0.076 5.924 11 C 0.209 3.791 12 C -0.022 4.022 13 C -0.092 4.092 14 C 0.025 3.975 15 C -0.544 4.544 16 H 0.056 0.944 17 C 0.004 3.996 18 N -0.929 5.929 19 Si 0.958 3.042 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.266 1.266 23 N -0.495 5.495 24 H 0.052 0.948 25 H 0.107 0.893 26 H 0.048 0.952 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.033 0.967 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.007 0.993 37 H 0.004 0.996 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.629 -17.847 10.982 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.001 4.001 4 C 0.128 3.872 5 H 0.130 0.870 6 O -0.295 6.295 7 C -0.072 4.072 8 C -0.137 4.137 9 N -0.088 5.088 10 O 0.017 5.983 11 C -0.011 4.011 12 C -0.061 4.061 13 C -0.131 4.131 14 C -0.012 4.012 15 C -0.582 4.582 16 H 0.075 0.925 17 C -0.195 4.195 18 N -0.570 5.570 19 Si 0.783 3.217 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.191 1.191 23 N -0.230 5.230 24 H 0.070 0.930 25 H 0.125 0.875 26 H 0.067 0.933 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.127 0.873 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.026 0.974 37 H 0.022 0.978 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.885 -18.413 11.623 22.556 hybrid contribution -0.256 1.168 -0.833 1.458 sum -6.141 -17.245 10.789 21.249 Atomic orbital electron populations 1.23008 0.78687 1.04448 1.00982 1.87824 1.21978 1.26325 1.95613 1.22381 0.89816 0.86069 1.01883 1.20111 0.93095 0.83870 0.90174 0.87008 1.88007 1.43519 1.67290 1.30680 1.23076 0.84941 0.94598 1.04591 1.26511 1.01160 1.00402 0.85604 1.74628 1.15089 0.95538 1.23583 1.85323 1.53652 1.32690 1.26668 1.29354 0.94570 0.93521 0.83633 1.20531 0.97248 0.92813 0.95524 1.21443 0.97045 0.96525 0.98095 1.18993 0.95156 0.93144 0.93877 1.21678 0.93867 1.16966 1.25678 0.92537 1.25860 0.97151 0.98823 0.97624 1.70058 1.15795 1.33572 1.37534 0.85553 0.79259 0.79010 0.77874 1.19897 1.20845 1.19081 1.71928 1.16702 1.07640 1.26684 0.92981 0.87497 0.93286 0.90702 0.92249 0.87295 0.91663 0.94826 0.86047 0.86327 0.92915 0.92342 0.97414 0.97777 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 11.01 113.37 1.25 1.61 16 2 O -0.40 -8.69 10.67 -144.34 -1.54 -10.23 16 3 C 0.08 1.74 5.58 71.98 0.40 2.14 16 4 C 0.19 4.67 2.94 29.85 0.09 4.76 16 5 H 0.11 2.51 7.79 -2.39 -0.02 2.49 16 6 O -0.38 -9.53 10.30 -144.34 -1.49 -11.02 16 7 C 0.02 0.43 10.81 113.37 1.23 1.66 16 8 C 0.14 4.03 7.06 138.46 0.98 5.01 16 9 N -0.38 -11.99 12.16 -60.30 -0.73 -12.73 16 10 O 0.08 2.32 11.31 74.81 0.85 3.17 16 11 C 0.21 6.21 7.77 88.38 0.69 6.90 16 12 C -0.02 -0.64 5.84 29.85 0.17 -0.47 16 13 C -0.09 -3.40 5.14 30.60 0.16 -3.24 16 14 C 0.03 1.22 4.97 29.85 0.15 1.37 16 15 C -0.54 -29.61 9.11 25.60 0.23 -29.38 16 16 H 0.06 2.99 7.74 -2.91 -0.02 2.96 16 17 C 0.00 0.20 5.46 84.65 0.46 0.66 16 18 N -0.93 -54.40 13.29 21.45 0.28 -54.12 16 19 Si 0.96 43.16 29.54 68.60 2.03 45.19 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 23 N -0.49 -15.29 11.55 -303.17 -3.50 -18.79 16 24 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 0.99 8.09 -2.39 -0.02 0.97 16 31 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.12 2.98 8.14 -2.39 -0.02 2.97 16 33 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 34 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 37 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -65.65 333.58 2.73 -62.92 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: 1.04 Total: 4.60 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 5.80 Total: -8.99 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -3.95 Total: -85.64 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -2.18 Total: -18.08 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -65.65 2.73 -62.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896657754.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.952 kcal (2) G-P(sol) polarization free energy of solvation -65.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds