Wall clock time and date at job start Mon Mar 30 2020 02:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86796 * 120.00107 * 2 1 4 4 H 1.48502 * 109.47097 * 274.99120 * 3 2 1 5 5 H 1.48498 * 109.47079 * 34.99135 * 3 2 1 6 6 H 1.48504 * 109.47223 * 154.99042 * 3 2 1 7 7 C 1.38816 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99812 * 185.05976 * 7 2 1 9 9 N 1.36935 * 120.00009 * 5.05778 * 7 2 1 10 10 C 1.47582 * 134.49179 * 173.48151 * 9 7 2 11 11 C 1.53942 * 86.11691 * 155.35861 * 10 9 7 12 12 N 1.46497 * 113.73990 * 137.95249 * 11 10 9 13 13 C 1.34777 * 120.00056 * 156.92889 * 12 11 10 14 14 O 1.21284 * 119.99934 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00276 * 180.02562 * 13 12 11 16 16 H 1.09008 * 109.47202 * 60.00100 * 15 13 12 17 17 C 1.52996 * 109.47168 * 299.99591 * 15 13 12 18 18 C 1.52997 * 109.47356 * 179.97438 * 17 15 13 19 19 C 1.53002 * 109.47198 * 60.00088 * 18 17 15 20 20 C 1.52996 * 109.46895 * 300.00194 * 19 18 17 21 21 H 1.09002 * 109.47272 * 179.97438 * 20 19 18 22 22 F 1.39894 * 109.47365 * 299.99460 * 20 19 18 23 23 C 1.53001 * 109.47666 * 59.99794 * 20 19 18 24 24 C 1.47815 * 134.45945 * 353.35005 * 9 7 2 25 25 H 0.97001 * 119.99334 * 359.97438 * 1 2 3 26 26 H 1.09003 * 113.76734 * 41.06066 * 10 9 7 27 27 H 1.08994 * 113.87382 * 269.67535 * 10 9 7 28 28 H 1.09002 * 113.74624 * 269.15561 * 11 10 9 29 29 H 0.96997 * 120.00507 * 336.92804 * 12 11 10 30 30 H 1.08995 * 109.47171 * 300.00233 * 17 15 13 31 31 H 1.09002 * 109.46732 * 60.00231 * 17 15 13 32 32 H 1.09003 * 109.47688 * 300.00378 * 18 17 15 33 33 H 1.09004 * 109.47385 * 180.02562 * 18 17 15 34 34 H 1.08999 * 109.47562 * 179.97438 * 19 18 17 35 35 H 1.08995 * 109.46719 * 59.99868 * 19 18 17 36 36 H 1.08991 * 109.47844 * 179.97438 * 23 20 19 37 37 H 1.08999 * 109.46793 * 59.99266 * 23 20 19 38 38 H 1.08998 * 113.76654 * 90.37743 * 24 9 7 39 39 H 1.09004 * 113.83283 * 318.91962 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5045 2.6199 0.8029 6 1 3.5966 1.4120 0.5919 7 6 2.0103 -1.2022 -0.0005 8 1 3.0871 -1.2041 0.0820 9 7 1.3295 -2.3857 -0.1056 10 6 1.7286 -3.7984 -0.2582 11 6 0.3710 -4.1419 0.3811 12 7 -0.3175 -5.2631 -0.2633 13 6 -1.2390 -5.9705 0.4200 14 8 -1.4979 -5.6793 1.5686 15 6 -1.9468 -7.1242 -0.2426 16 1 -1.2151 -7.8717 -0.5492 17 6 -2.7054 -6.6191 -1.4715 18 6 -3.4236 -7.7904 -2.1446 19 6 -4.4106 -8.4182 -1.1584 20 6 -3.6520 -8.9233 0.0704 21 1 -4.3552 -9.3702 0.7733 22 9 -2.7125 -9.8823 -0.3231 23 6 -2.9338 -7.7520 0.7437 24 6 -0.1002 -2.7609 -0.1093 25 1 -0.4849 0.8401 0.0004 26 1 2.5859 -4.0811 0.3527 27 1 1.8202 -4.1214 -1.2951 28 1 0.4075 -4.2331 1.4667 29 1 -0.1103 -5.4963 -1.1817 30 1 -3.4371 -5.8716 -1.1649 31 1 -2.0022 -6.1723 -2.1743 32 1 -2.6916 -8.5376 -2.4513 33 1 -3.9637 -7.4306 -3.0204 34 1 -4.9226 -9.2524 -1.6381 35 1 -5.1425 -7.6710 -0.8518 36 1 -2.3937 -8.1117 1.6193 37 1 -3.6658 -7.0048 1.0502 38 1 -0.5476 -2.7767 -1.1031 39 1 -0.7002 -2.2168 0.6201 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030294662.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:20 Heat of formation + Delta-G solvation = -75.611790 kcal Electronic energy + Delta-G solvation = -20980.816043 eV Core-core repulsion = 17644.635895 eV Total energy + Delta-G solvation = -3336.180147 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.57337 -41.24281 -39.50418 -37.88261 -35.16854 -33.81259 -32.03972 -31.31059 -29.36389 -26.64463 -25.71476 -24.16434 -23.56431 -21.52242 -21.34304 -20.49177 -18.79198 -18.37182 -17.53248 -17.01019 -16.68884 -16.36743 -16.16352 -15.90203 -15.72580 -15.34514 -14.93321 -14.66786 -14.07231 -13.75680 -13.54265 -13.34210 -13.24792 -13.21965 -12.95553 -12.79246 -12.64398 -12.48022 -12.28834 -12.06586 -11.95342 -11.72014 -11.53349 -11.37340 -10.99912 -10.90741 -10.63518 -9.95139 -8.98195 -7.95169 -5.29742 1.45072 1.47240 1.56509 1.64646 2.16572 2.49330 3.22330 3.36247 3.49668 3.59847 3.70408 3.83935 3.89360 3.99787 4.12253 4.22455 4.32735 4.37999 4.42799 4.50355 4.56441 4.67669 4.73666 4.88888 4.99519 5.08599 5.10949 5.14847 5.17173 5.19861 5.25816 5.30468 5.46070 5.49062 5.69596 5.87066 6.61977 6.86252 7.30674 7.55901 8.49675 9.22442 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.044231 B = 0.003553 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.886684 B = 7879.089647 C = 8018.347225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.067 4.067 3 Si 0.982 3.018 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.264 1.264 7 C -0.238 4.238 8 H 0.090 0.910 9 N -0.639 5.639 10 C 0.122 3.878 11 C 0.118 3.882 12 N -0.702 5.702 13 C 0.513 3.487 14 O -0.588 6.588 15 C -0.096 4.096 16 H 0.114 0.886 17 C -0.112 4.112 18 C -0.115 4.115 19 C -0.146 4.146 20 C 0.093 3.907 21 H 0.104 0.896 22 F -0.225 7.225 23 C -0.126 4.126 24 C 0.157 3.843 25 H 0.249 0.751 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.414 0.586 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.028 0.972 39 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.628 -19.764 -5.449 21.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.260 4.260 3 Si 0.810 3.190 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.366 4.366 8 H 0.108 0.892 9 N -0.366 5.366 10 C -0.004 4.004 11 C 0.012 3.988 12 N -0.354 5.354 13 C 0.301 3.699 14 O -0.469 6.469 15 C -0.118 4.118 16 H 0.132 0.868 17 C -0.150 4.150 18 C -0.152 4.152 19 C -0.184 4.184 20 C 0.057 3.943 21 H 0.121 0.879 22 F -0.206 7.206 23 C -0.165 4.165 24 C 0.030 3.970 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.107 0.893 29 H 0.251 0.749 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.046 0.954 39 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -7.715 -19.254 -4.622 21.251 hybrid contribution 0.492 1.243 -0.187 1.349 sum -7.224 -18.011 -4.809 19.993 Atomic orbital electron populations 1.70055 1.06716 1.25796 1.57650 1.25739 0.96550 1.01209 1.02509 0.85007 0.77881 0.78747 0.77381 1.21135 1.22263 1.18879 1.19444 0.91416 0.83013 1.42775 0.89231 1.46040 1.03364 1.02106 1.85137 1.23005 0.95110 0.83384 0.98883 1.23157 0.93151 0.84823 0.97691 1.45912 1.40466 1.31774 1.17202 1.21299 0.78917 0.83645 0.86023 1.90677 1.65577 1.70645 1.19967 1.21294 0.98547 0.94864 0.97053 0.86778 1.21590 0.99719 0.98780 0.94882 1.21490 0.98565 0.96842 0.98325 1.22184 0.98601 1.02287 0.95304 1.21707 0.88667 0.86125 0.97768 0.87863 1.92768 1.68629 1.66451 1.92749 1.21930 0.98920 0.97825 0.97785 1.22519 0.87200 0.90327 0.96907 0.94201 0.91863 0.91608 0.89265 0.74852 0.91940 0.90120 0.91022 0.89660 0.89319 0.89201 0.91511 0.89959 0.95442 0.95442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.97 11.51 21.65 0.25 -58.72 16 2 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 3 Si 0.98 46.03 29.56 68.60 2.03 48.06 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.24 -13.50 10.70 84.03 0.90 -12.60 16 8 H 0.09 4.78 7.83 -2.91 -0.02 4.76 16 9 N -0.64 -33.13 3.70 -716.72 -2.65 -35.78 16 10 C 0.12 4.69 8.69 86.48 0.75 5.44 16 11 C 0.12 4.62 4.40 46.75 0.21 4.82 16 12 N -0.70 -20.74 5.27 -447.41 -2.36 -23.10 16 13 C 0.51 15.63 7.15 87.66 0.63 16.26 16 14 O -0.59 -23.50 15.61 -3.04 -0.05 -23.54 16 15 C -0.10 -2.03 2.40 -11.54 -0.03 -2.06 16 16 H 0.11 2.12 7.80 -2.38 -0.02 2.10 16 17 C -0.11 -1.92 5.10 30.59 0.16 -1.76 16 18 C -0.11 -1.48 5.80 30.59 0.18 -1.31 16 19 C -0.15 -1.75 5.72 30.59 0.17 -1.57 16 20 C 0.09 1.42 4.12 30.59 0.13 1.55 16 21 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 22 F -0.22 -4.35 16.04 44.97 0.72 -3.63 16 23 C -0.13 -2.59 4.29 30.60 0.13 -2.45 16 24 C 0.16 7.75 7.24 86.44 0.63 8.37 16 25 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 26 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.07 2.20 8.11 -2.39 -0.02 2.18 16 28 H 0.09 3.90 7.51 -2.39 -0.02 3.88 16 29 H 0.41 9.33 8.13 -92.71 -0.75 8.57 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.26 7.56 -2.39 -0.02 1.24 16 32 H 0.07 0.94 7.80 -2.39 -0.02 0.92 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 1.55 8.10 -2.39 -0.02 1.53 16 37 H 0.08 1.79 8.10 -2.39 -0.02 1.77 16 38 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 39 H 0.03 1.57 7.37 -2.39 -0.02 1.56 16 Total: -1.00 -73.19 317.73 2.55 -70.65 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.29 Total: 14.78 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 4.31 Total: 11.29 kcal Atomic # 7 Polarization: -112.84 SS G_CDS: -4.76 Total: -117.60 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.05 Total: -23.54 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.72 Total: -3.63 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -73.19 2.55 -70.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030294662.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.967 kcal (2) G-P(sol) polarization free energy of solvation -73.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds