Wall clock time and date at job start Mon Mar 30 2020 00:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45192 * 109.47508 * 2 1 4 4 C 1.34225 * 117.00088 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00203 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99932 * 180.02562 * 4 3 2 7 7 N 1.46506 * 109.47289 * 180.02562 * 6 4 3 8 8 C 1.46493 * 119.99811 * 89.99713 * 7 6 4 9 9 C 1.50706 * 109.47492 * 90.00399 * 8 7 6 10 10 H 1.08004 * 119.99292 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.00653 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00304 * 179.97438 * 11 9 8 13 13 Si 1.86806 * 119.99713 * 0.02562 * 11 9 8 14 14 H 1.48505 * 109.46978 * 89.99897 * 13 11 9 15 15 H 1.48497 * 109.46747 * 209.99718 * 13 11 9 16 16 H 1.48502 * 109.47216 * 329.99707 * 13 11 9 17 17 C 1.34778 * 120.00058 * 270.00143 * 7 6 4 18 18 O 1.21583 * 120.00048 * 179.97438 * 17 7 6 19 19 N 1.34779 * 119.99708 * 359.97438 * 17 7 6 20 20 C 1.46503 * 119.99671 * 180.02562 * 19 17 7 21 21 C 1.52998 * 117.49785 * 223.74328 * 20 19 17 22 22 C 1.52998 * 117.49591 * 155.08510 * 20 19 17 23 23 H 1.08999 * 109.47724 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47383 * 300.00401 * 1 2 3 25 25 H 1.09009 * 109.47031 * 59.99914 * 1 2 3 26 26 H 1.09004 * 109.46728 * 240.00190 * 2 1 3 27 27 H 1.09001 * 109.46610 * 120.00532 * 2 1 3 28 28 H 1.09001 * 109.47438 * 59.99841 * 6 4 3 29 29 H 1.09004 * 109.47113 * 300.00097 * 6 4 3 30 30 H 1.09006 * 109.47571 * 210.00074 * 8 7 6 31 31 H 1.09005 * 109.47727 * 330.00531 * 8 7 6 32 32 H 0.97002 * 120.00034 * 180.02562 * 12 11 9 33 33 H 0.97000 * 119.99926 * 359.97438 * 19 17 7 34 34 H 1.09002 * 115.54795 * 9.41829 * 20 19 17 35 35 H 1.09002 * 117.49803 * 0.02562 * 21 20 19 36 36 H 1.09001 * 117.49504 * 145.01807 * 21 20 19 37 37 H 1.09006 * 117.49676 * 214.97732 * 22 20 19 38 38 H 1.08998 * 117.50379 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3688 0.0000 4 6 3.3447 1.5446 0.0005 5 8 4.0807 0.5865 0.0015 6 6 3.9208 2.9372 0.0012 7 7 5.3839 2.8605 0.0010 8 6 6.1152 2.8227 -1.2677 9 6 6.4405 4.2286 -1.7022 10 1 6.1335 5.0665 -1.0938 11 6 7.1309 4.4453 -2.8758 12 7 7.4143 5.6722 -3.2552 13 14 7.6625 2.9960 -3.9278 14 1 6.5927 2.6763 -4.9069 15 1 8.9105 3.3430 -4.6539 16 1 7.9069 1.8168 -3.0588 17 6 6.0569 2.8247 1.1682 18 8 7.2710 2.7606 1.1681 19 7 5.3840 2.8599 2.3354 20 6 6.1156 2.8215 3.6041 21 6 5.5714 1.9104 4.7061 22 6 5.4338 3.4297 4.8314 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8932 -0.5139 0.8900 28 1 3.5846 3.4692 0.8911 29 1 3.5852 3.4697 -0.8888 30 1 7.0395 2.2597 -1.1378 31 1 5.5000 2.3408 -2.0276 32 1 7.8997 5.8246 -4.0811 33 1 4.4153 2.9114 2.3355 34 1 7.1978 2.9259 3.5261 35 1 4.6692 1.3391 4.4871 36 1 6.2955 1.4155 5.3533 37 1 6.0676 3.9339 5.5610 38 1 4.4412 3.8588 4.6948 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191472721.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:08 Heat of formation + Delta-G solvation = -75.538224 kcal Electronic energy + Delta-G solvation = -21246.304786 eV Core-core repulsion = 17897.755039 eV Total energy + Delta-G solvation = -3348.549747 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.54858 -39.45537 -37.18307 -36.50425 -34.85836 -32.92007 -32.00528 -31.85344 -28.92121 -27.02778 -23.41507 -23.03529 -22.39784 -21.41608 -21.16046 -19.59297 -17.80603 -17.69380 -16.87099 -16.72424 -16.34343 -15.92768 -14.98006 -14.57354 -14.40362 -14.15213 -13.87005 -13.44100 -13.17588 -12.92012 -12.66561 -12.43209 -12.25922 -11.80711 -11.72083 -11.64350 -11.59689 -11.30653 -10.94974 -10.58226 -10.54760 -10.46554 -10.45310 -10.08399 -9.60929 -9.41310 -8.58283 -8.52611 -7.86388 -6.08025 -4.07043 2.31853 2.54345 3.09986 3.29850 3.39031 3.45252 3.64042 4.10612 4.26432 4.41998 4.74110 4.77691 4.82208 4.88339 4.99983 5.01359 5.11646 5.13007 5.24825 5.51834 5.56589 5.57879 5.60406 5.77247 5.78507 5.94283 6.03880 6.43913 6.47739 6.81542 6.91884 7.18433 7.45201 7.62738 7.86583 8.42708 8.47614 8.94709 9.16832 9.52422 11.05012 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.011866 B = 0.007167 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.211087 B = 3906.014196 C = 5720.994796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.362 6.362 4 C 0.433 3.567 5 O -0.491 6.491 6 C 0.124 3.876 7 N -0.590 5.590 8 C 0.234 3.766 9 C -0.531 4.531 10 H 0.077 0.923 11 C 0.075 3.925 12 N -0.896 5.896 13 Si 0.871 3.129 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.262 1.262 17 C 0.715 3.285 18 O -0.570 6.570 19 N -0.727 5.727 20 C 0.110 3.890 21 C -0.201 4.201 22 C -0.194 4.194 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.106 0.894 29 H 0.133 0.867 30 H 0.046 0.954 31 H 0.025 0.975 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.139 0.861 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.935 -8.323 11.540 19.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.279 6.279 4 C 0.272 3.728 5 O -0.376 6.376 6 C -0.003 4.003 7 N -0.325 5.325 8 C 0.114 3.886 9 C -0.570 4.570 10 H 0.095 0.905 11 C -0.127 4.127 12 N -0.534 5.534 13 Si 0.697 3.303 14 H -0.201 1.201 15 H -0.208 1.208 16 H -0.187 1.187 17 C 0.417 3.583 18 O -0.446 6.446 19 N -0.382 5.382 20 C 0.002 3.998 21 C -0.240 4.240 22 C -0.233 4.233 23 H 0.095 0.905 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.123 0.877 29 H 0.151 0.849 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.223 0.777 34 H 0.157 0.843 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.680 -8.591 11.314 19.042 hybrid contribution -0.317 -0.839 -0.634 1.098 sum -12.998 -9.430 10.681 19.286 Atomic orbital electron populations 1.21795 0.92749 1.02760 1.03515 1.22972 0.95186 0.80719 1.02489 1.86516 1.24891 1.32062 1.84418 1.25054 0.80447 0.94301 0.72953 1.90692 1.60280 1.42848 1.43805 1.20914 0.83167 0.89410 1.06817 1.46924 1.02943 1.75767 1.06827 1.19645 0.92367 0.98391 0.78207 1.21348 1.36964 0.91474 1.07174 0.90463 1.24800 0.95051 0.95592 0.97304 1.69888 1.40366 1.19652 1.23514 0.86922 0.78748 0.83705 0.80904 1.20099 1.20847 1.18665 1.15689 0.85420 0.77385 0.79777 1.90894 1.11432 1.56667 1.85592 1.44658 1.08816 1.80597 1.04102 1.21344 0.97264 1.02421 0.78726 1.23433 1.03863 0.93127 1.03561 1.23384 1.02757 0.95861 1.01269 0.90481 0.91544 0.91390 0.91334 0.91507 0.87663 0.84933 0.93553 0.95716 0.92530 0.77698 0.84338 0.88969 0.88237 0.88016 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.29 37.16 0.38 -0.75 16 2 C 0.06 0.65 6.18 37.16 0.23 0.88 16 3 O -0.36 -4.70 10.22 -39.24 -0.40 -5.10 16 4 C 0.43 6.79 8.02 36.01 0.29 7.08 16 5 O -0.49 -9.44 16.18 -18.75 -0.30 -9.74 16 6 C 0.12 1.94 5.76 -5.19 -0.03 1.91 16 7 N -0.59 -12.49 1.94 -182.17 -0.35 -12.84 16 8 C 0.23 5.88 4.23 -5.19 -0.02 5.86 16 9 C -0.53 -15.15 9.94 -34.44 -0.34 -15.49 16 10 H 0.08 2.38 8.06 -52.48 -0.42 1.96 16 11 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 12 N -0.90 -27.48 13.96 55.43 0.77 -26.70 16 13 Si 0.87 21.81 27.47 -169.99 -4.67 17.14 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.26 -6.55 6.54 56.52 0.37 -6.18 16 17 C 0.72 15.47 8.28 -86.91 -0.72 14.75 16 18 O -0.57 -14.83 15.49 5.29 0.08 -14.75 16 19 N -0.73 -11.78 5.43 -58.68 -0.32 -12.10 16 20 C 0.11 1.56 6.43 -67.93 -0.44 1.13 16 21 C -0.20 -2.21 10.46 -26.70 -0.28 -2.49 16 22 C -0.19 -2.02 10.46 -26.70 -0.28 -2.30 16 23 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.71 8.13 -51.93 -0.42 0.28 16 28 H 0.11 1.26 6.36 -51.93 -0.33 0.93 16 29 H 0.13 1.97 8.07 -51.93 -0.42 1.55 16 30 H 0.05 1.28 6.48 -51.93 -0.34 0.95 16 31 H 0.02 0.59 7.50 -51.93 -0.39 0.21 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.39 5.14 6.56 -40.82 -0.27 4.87 16 34 H 0.14 2.22 7.40 -51.93 -0.38 1.83 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 328.97 15.07 4.96 4.96 Total: -1.00 -36.02 328.97 -7.06 -43.08 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.52 Total: 3.40 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: -1.31 Total: 12.66 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: 0.10 Total: -51.65 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.62 Total: -29.59 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -36.02 -7.06 -43.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191472721.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.455 kcal (2) G-P(sol) polarization free energy of solvation -36.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds