Wall clock time and date at job start Mon Mar 30 2020 01:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39630 * 120.14770 * 260.27870 * 3 2 1 5 5 C 1.37951 * 119.84583 * 179.72112 * 4 3 2 6 6 C 1.38365 * 120.14849 * 0.57629 * 5 4 3 7 7 C 1.50696 * 119.84922 * 179.69598 * 6 5 4 8 8 C 1.53005 * 109.47341 * 269.98389 * 7 6 5 9 9 C 1.52996 * 109.47038 * 180.02562 * 8 7 6 10 10 N 1.46906 * 109.47119 * 179.97438 * 9 8 7 11 11 C 1.47486 * 110.99431 * 74.02601 * 10 9 8 12 12 C 1.53516 * 87.92748 * 138.70507 * 11 10 9 13 13 C 1.50700 * 114.16889 * 220.32411 * 12 11 10 14 14 H 1.08005 * 119.99866 * 93.84279 * 13 12 11 15 15 C 1.37876 * 120.00322 * 273.83944 * 13 12 11 16 16 N 1.31514 * 119.99693 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00317 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46988 * 90.00131 * 17 15 13 19 19 H 1.48493 * 109.47442 * 210.00518 * 17 15 13 20 20 H 1.48499 * 109.46918 * 330.00518 * 17 15 13 21 21 C 1.47473 * 111.00024 * 169.99390 * 10 9 8 22 22 C 1.38365 * 120.30591 * 359.68019 * 6 5 4 23 23 C 1.37947 * 120.14939 * 0.03939 * 22 6 5 24 24 H 1.07999 * 120.08232 * 359.97438 * 4 3 2 25 25 H 1.08002 * 119.92831 * 180.25347 * 5 4 3 26 26 H 1.09004 * 109.46985 * 29.98169 * 7 6 5 27 27 H 1.08995 * 109.47261 * 149.97946 * 7 6 5 28 28 H 1.09000 * 109.46466 * 299.99670 * 8 7 6 29 29 H 1.08995 * 109.47305 * 59.99584 * 8 7 6 30 30 H 1.09004 * 109.47102 * 299.99666 * 9 8 7 31 31 H 1.08995 * 109.47447 * 59.99629 * 9 8 7 32 32 H 1.08997 * 113.47561 * 253.46537 * 11 10 9 33 33 H 1.08992 * 113.47908 * 23.93849 * 11 10 9 34 34 H 1.09007 * 114.34512 * 87.63221 * 12 11 10 35 35 H 0.97002 * 120.00070 * 180.02562 * 16 15 13 36 36 H 1.08997 * 113.47969 * 336.06860 * 21 10 9 37 37 H 1.09005 * 113.47387 * 106.52859 * 21 10 9 38 38 H 1.07993 * 119.92704 * 180.02562 * 22 6 5 39 39 H 1.08003 * 120.07687 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.2048 1.1901 5 6 4.6486 0.1985 1.1839 6 6 5.3374 0.0023 0.0000 7 6 6.8443 0.0034 -0.0001 8 6 7.3533 1.4268 -0.2370 9 6 8.8832 1.4278 -0.2378 10 7 9.3719 2.7943 -0.4659 11 6 9.1908 3.6279 0.7372 12 6 10.5806 4.2213 0.4672 13 6 11.4140 4.4291 1.7055 14 1 12.1090 3.6658 2.0230 15 6 11.2894 5.5937 2.4330 16 7 10.4428 6.5230 2.0466 17 14 12.3219 5.8509 3.9683 18 1 13.6003 6.5108 3.6002 19 1 11.5796 6.7093 4.9260 20 1 12.6067 4.5371 4.5991 21 6 10.8264 2.8803 -0.2382 22 6 4.6489 -0.1954 -1.1838 23 6 3.2694 -0.1972 -1.1910 24 1 2.7328 0.3633 2.1140 25 1 5.1923 0.3522 2.1044 26 1 7.2080 -0.3569 0.9622 27 1 7.2081 -0.6493 -0.7935 28 1 6.9896 1.7871 -1.1993 29 1 6.9895 2.0795 0.5564 30 1 9.2473 1.0672 0.7244 31 1 9.2467 0.7751 -1.0314 32 1 8.3832 4.3541 0.6447 33 1 9.1367 3.0516 1.6607 34 1 10.5793 5.0831 -0.2003 35 1 10.3553 7.3424 2.5582 36 1 11.2088 2.1045 0.4250 37 1 11.4050 2.9727 -1.1574 38 1 5.1926 -0.3483 -2.1042 39 1 2.7332 -0.3511 -2.1158 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208860050.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:29 Heat of formation + Delta-G solvation = 72.006584 kcal Electronic energy + Delta-G solvation = -18840.605172 eV Core-core repulsion = 15941.595463 eV Total energy + Delta-G solvation = -2899.009710 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.89184 -38.95752 -36.85454 -34.80422 -32.70406 -31.38310 -31.26179 -28.38620 -25.90635 -24.82955 -23.77005 -23.06899 -21.81131 -20.67824 -19.19718 -18.62623 -16.70892 -16.04570 -15.85050 -14.98429 -14.81747 -14.66169 -14.44590 -14.23056 -13.94957 -13.81204 -13.58535 -13.12657 -13.03974 -12.73195 -12.17463 -12.06810 -11.79724 -11.53977 -11.42030 -11.37489 -11.03774 -10.93773 -10.74431 -10.53302 -10.19689 -9.72452 -9.32553 -9.22125 -8.96589 -8.90140 -8.45390 -7.99625 -6.07028 -4.11562 0.48661 1.05009 2.39607 2.67485 3.27157 3.34416 3.36597 3.57910 3.61867 4.37924 4.49556 4.50893 4.57606 4.90659 5.00661 5.05648 5.20779 5.23612 5.32457 5.42452 5.58567 5.60634 5.71235 5.80964 5.92537 5.98402 5.99360 6.06979 6.20373 6.30237 6.39521 6.46991 6.50634 6.54041 6.67219 6.76931 7.13461 7.17403 7.20758 7.71295 7.90225 8.08748 8.36078 8.91668 9.53462 11.02558 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026065 B = 0.002980 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.996898 B = 9394.658394 C = 9986.135878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C 0.259 3.741 3 C -0.044 4.044 4 C -0.066 4.066 5 C -0.118 4.118 6 C -0.040 4.040 7 C -0.087 4.087 8 C -0.106 4.106 9 C 0.022 3.978 10 N -0.487 5.487 11 C 0.006 3.994 12 C 0.040 3.960 13 C -0.517 4.517 14 H 0.057 0.943 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.891 3.109 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.006 4.006 22 C -0.119 4.119 23 C -0.067 4.067 24 H 0.132 0.868 25 H 0.135 0.865 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.035 0.965 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.262 0.738 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.134 0.866 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.826 -14.417 -4.103 17.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.101 5.101 2 C -0.056 4.056 3 C -0.047 4.047 4 C -0.087 4.087 5 C -0.136 4.136 6 C -0.041 4.041 7 C -0.125 4.125 8 C -0.144 4.144 9 C -0.107 4.107 10 N -0.209 5.209 11 C -0.123 4.123 12 C 0.021 3.979 13 C -0.555 4.555 14 H 0.075 0.925 15 C -0.136 4.136 16 N -0.523 5.523 17 Si 0.718 3.282 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.134 4.134 22 C -0.137 4.137 23 C -0.088 4.088 24 H 0.149 0.851 25 H 0.153 0.847 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.152 0.848 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.984 -14.070 -4.705 19.071 hybrid contribution 1.147 -0.163 1.678 2.040 sum -10.836 -14.233 -3.027 18.143 Atomic orbital electron populations 1.81250 1.12153 1.09244 1.07464 1.25781 0.92727 0.93480 0.93658 1.15984 0.84150 1.09006 0.95573 1.21174 0.94330 0.96520 0.96629 1.21078 0.93409 1.00516 0.98614 1.20271 0.96531 0.94327 0.92992 1.20751 0.89777 0.98679 1.03305 1.21471 0.95474 0.94538 1.02933 1.22591 0.94800 0.93774 0.99564 1.68878 1.08460 1.07530 1.36015 1.23997 1.02422 0.95932 0.89940 1.20098 0.91126 0.91427 0.95218 1.21039 1.22795 1.02634 1.09014 0.92489 1.25019 0.95136 0.95775 0.97702 1.69967 1.35428 1.07608 1.39340 0.86625 0.80388 0.78165 0.83003 1.20552 1.21189 1.19901 1.23995 0.89213 1.01194 0.99048 1.21034 0.93366 1.00958 0.98345 1.21152 0.94315 0.96806 0.96500 0.85055 0.84742 0.90557 0.90544 0.91196 0.91543 0.94662 0.91864 0.91935 0.92978 0.91867 0.92858 0.92884 0.92124 0.84824 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.40 18.54 41.83 0.78 -4.62 16 2 C 0.26 2.69 15.33 -22.47 -0.34 2.35 16 3 C -0.04 -0.38 5.73 -106.93 -0.61 -0.99 16 4 C -0.07 -0.54 9.76 -39.17 -0.38 -0.92 16 5 C -0.12 -0.99 9.68 -39.64 -0.38 -1.37 16 6 C -0.04 -0.35 5.14 -104.53 -0.54 -0.89 16 7 C -0.09 -0.80 5.34 -27.88 -0.15 -0.95 16 8 C -0.11 -1.33 5.30 -26.73 -0.14 -1.47 16 9 C 0.02 0.33 4.82 -3.82 -0.02 0.31 16 10 N -0.49 -9.38 6.41 -244.65 -1.57 -10.95 16 11 C 0.01 0.13 6.57 -7.54 -0.05 0.08 16 12 C 0.04 0.99 3.77 -91.24 -0.34 0.65 16 13 C -0.52 -13.80 8.82 -34.44 -0.30 -14.10 16 14 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16 15 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 16 N -0.89 -25.22 13.26 55.43 0.74 -24.48 16 17 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 C -0.01 -0.12 7.27 -7.56 -0.05 -0.17 16 22 C -0.12 -0.93 9.68 -39.64 -0.38 -1.31 16 23 C -0.07 -0.52 9.76 -39.17 -0.38 -0.90 16 24 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 25 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 26 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 27 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.92 7.67 -51.93 -0.40 0.52 16 30 H 0.04 0.54 7.56 -51.93 -0.39 0.15 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.05 1.15 7.66 -51.93 -0.40 0.75 16 34 H 0.06 1.71 8.11 -51.93 -0.42 1.29 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 36 H 0.05 1.06 7.72 -51.93 -0.40 0.66 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 LS Contribution 337.31 15.07 5.08 5.08 Total: -1.00 -29.35 337.31 -9.96 -39.30 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -5.78 Total: -2.02 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -4.18 Total: -17.98 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: -0.06 Total: -40.06 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.35 -9.96 -39.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208860050.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.311 kcal (2) G-P(sol) polarization free energy of solvation -29.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds