Wall clock time and date at job start Mon Mar 30 2020 01:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39630 * 120.14770 * 260.27870 * 3 2 1 5 5 C 1.37951 * 119.84583 * 179.72112 * 4 3 2 6 6 C 1.38365 * 120.14849 * 0.57629 * 5 4 3 7 7 C 1.50696 * 119.84922 * 179.69598 * 6 5 4 8 8 C 1.53005 * 109.47341 * 269.98389 * 7 6 5 9 9 C 1.52996 * 109.47038 * 180.02562 * 8 7 6 10 10 N 1.46906 * 109.47119 * 179.97438 * 9 8 7 11 11 C 1.47486 * 110.99431 * 74.02601 * 10 9 8 12 12 C 1.53516 * 87.92748 * 138.70507 * 11 10 9 13 13 C 1.50700 * 114.16889 * 220.32411 * 12 11 10 14 14 H 1.08005 * 119.99866 * 93.84279 * 13 12 11 15 15 C 1.37876 * 120.00322 * 273.83944 * 13 12 11 16 16 N 1.31514 * 119.99693 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00317 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46988 * 90.00131 * 17 15 13 19 19 H 1.48493 * 109.47442 * 210.00518 * 17 15 13 20 20 H 1.48499 * 109.46918 * 330.00518 * 17 15 13 21 21 C 1.47473 * 111.00024 * 169.99390 * 10 9 8 22 22 C 1.38365 * 120.30591 * 359.68019 * 6 5 4 23 23 C 1.37947 * 120.14939 * 0.03939 * 22 6 5 24 24 H 1.07999 * 120.08232 * 359.97438 * 4 3 2 25 25 H 1.08002 * 119.92831 * 180.25347 * 5 4 3 26 26 H 1.09004 * 109.46985 * 29.98169 * 7 6 5 27 27 H 1.08995 * 109.47261 * 149.97946 * 7 6 5 28 28 H 1.09000 * 109.46466 * 299.99670 * 8 7 6 29 29 H 1.08995 * 109.47305 * 59.99584 * 8 7 6 30 30 H 1.09004 * 109.47102 * 299.99666 * 9 8 7 31 31 H 1.08995 * 109.47447 * 59.99629 * 9 8 7 32 32 H 1.08997 * 113.47561 * 253.46537 * 11 10 9 33 33 H 1.08992 * 113.47908 * 23.93849 * 11 10 9 34 34 H 1.09007 * 114.34512 * 87.63221 * 12 11 10 35 35 H 0.97002 * 120.00070 * 180.02562 * 16 15 13 36 36 H 1.08997 * 113.47969 * 336.06860 * 21 10 9 37 37 H 1.09005 * 113.47387 * 106.52859 * 21 10 9 38 38 H 1.07993 * 119.92704 * 180.02562 * 22 6 5 39 39 H 1.08003 * 120.07687 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.2048 1.1901 5 6 4.6486 0.1985 1.1839 6 6 5.3374 0.0023 0.0000 7 6 6.8443 0.0034 -0.0001 8 6 7.3533 1.4268 -0.2370 9 6 8.8832 1.4278 -0.2378 10 7 9.3719 2.7943 -0.4659 11 6 9.1908 3.6279 0.7372 12 6 10.5806 4.2213 0.4672 13 6 11.4140 4.4291 1.7055 14 1 12.1090 3.6658 2.0230 15 6 11.2894 5.5937 2.4330 16 7 10.4428 6.5230 2.0466 17 14 12.3219 5.8509 3.9683 18 1 13.6003 6.5108 3.6002 19 1 11.5796 6.7093 4.9260 20 1 12.6067 4.5371 4.5991 21 6 10.8264 2.8803 -0.2382 22 6 4.6489 -0.1954 -1.1838 23 6 3.2694 -0.1972 -1.1910 24 1 2.7328 0.3633 2.1140 25 1 5.1923 0.3522 2.1044 26 1 7.2080 -0.3569 0.9622 27 1 7.2081 -0.6493 -0.7935 28 1 6.9896 1.7871 -1.1993 29 1 6.9895 2.0795 0.5564 30 1 9.2473 1.0672 0.7244 31 1 9.2467 0.7751 -1.0314 32 1 8.3832 4.3541 0.6447 33 1 9.1367 3.0516 1.6607 34 1 10.5793 5.0831 -0.2003 35 1 10.3553 7.3424 2.5582 36 1 11.2088 2.1045 0.4250 37 1 11.4050 2.9727 -1.1574 38 1 5.1926 -0.3483 -2.1042 39 1 2.7332 -0.3511 -2.1158 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208860050.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:29 Heat of formation + Delta-G solvation = 55.725809 kcal Electronic energy + Delta-G solvation = -18841.311160 eV Core-core repulsion = 15941.595463 eV Total energy + Delta-G solvation = -2899.715697 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.75547 -40.37716 -37.71544 -35.80982 -34.56854 -32.37033 -31.98329 -29.76077 -27.37523 -26.53952 -25.13341 -23.67317 -22.87286 -21.77921 -20.41777 -19.87104 -18.63281 -16.88273 -16.78540 -16.42355 -16.30033 -15.72417 -15.50440 -15.40784 -15.12572 -14.83641 -14.37457 -14.09939 -13.98696 -13.79270 -13.66037 -13.33762 -13.16153 -12.89885 -12.77381 -12.56555 -12.41566 -12.22146 -12.07518 -11.84487 -11.45778 -11.40337 -11.05372 -10.78226 -10.47383 -9.92250 -9.65236 -9.61619 -8.13191 -6.24366 -0.19459 0.45494 1.44236 1.45005 1.55110 1.58235 1.91897 2.44077 2.86084 2.90907 3.16409 3.39948 3.80764 3.90915 4.01405 4.13849 4.28558 4.32231 4.45397 4.49698 4.53798 4.58832 4.67702 4.77926 4.81891 4.86348 4.95271 5.02486 5.04207 5.10511 5.26188 5.28979 5.32145 5.37661 5.44101 5.61094 5.65476 5.71540 5.88254 5.92794 6.32746 6.41276 6.49088 6.85421 7.44155 8.96561 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026065 B = 0.002980 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.996898 B = 9394.658394 C = 9986.135878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.281 3.719 3 C -0.055 4.055 4 C -0.067 4.067 5 C -0.126 4.126 6 C -0.048 4.048 7 C -0.077 4.077 8 C -0.099 4.099 9 C 0.020 3.980 10 N -0.487 5.487 11 C 0.021 3.979 12 C 0.017 3.983 13 C -0.529 4.529 14 H 0.060 0.940 15 C 0.013 3.987 16 N -0.923 5.923 17 Si 0.957 3.043 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.264 1.264 21 C 0.009 3.991 22 C -0.120 4.120 23 C -0.064 4.064 24 H 0.143 0.857 25 H 0.142 0.858 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.035 0.965 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.027 0.973 35 H 0.262 0.738 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.153 0.847 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.206 -16.218 -4.113 19.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.033 4.033 3 C -0.058 4.058 4 C -0.088 4.088 5 C -0.144 4.144 6 C -0.049 4.049 7 C -0.115 4.115 8 C -0.137 4.137 9 C -0.109 4.109 10 N -0.209 5.209 11 C -0.108 4.108 12 C -0.002 4.002 13 C -0.567 4.567 14 H 0.078 0.922 15 C -0.186 4.186 16 N -0.562 5.562 17 Si 0.782 3.218 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.188 1.188 21 C -0.120 4.120 22 C -0.137 4.137 23 C -0.085 4.085 24 H 0.161 0.839 25 H 0.160 0.840 26 H 0.100 0.900 27 H 0.113 0.887 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.171 0.829 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.358 -15.892 -4.723 20.096 hybrid contribution 0.982 0.381 1.620 1.932 sum -10.376 -15.511 -3.103 18.918 Atomic orbital electron populations 1.81267 1.13452 1.11072 1.08952 1.26005 0.92881 0.92122 0.92310 1.16097 0.83185 1.10136 0.96425 1.21324 0.94411 0.96024 0.96992 1.21235 0.93555 1.00557 0.99080 1.20341 0.96368 0.94726 0.93484 1.20648 0.89996 0.96497 1.04367 1.21375 0.93583 0.96595 1.02104 1.22718 0.96494 0.91276 1.00393 1.68803 1.07654 1.10080 1.34344 1.23680 1.00042 0.95961 0.91116 1.20071 0.93067 0.92341 0.94763 1.21390 1.22879 1.02790 1.09665 0.92225 1.25834 0.96319 0.95602 1.00818 1.70097 1.37147 1.08138 1.40791 0.85575 0.78665 0.78345 0.79201 1.20091 1.21075 1.18832 1.23818 0.90305 0.98730 0.99137 1.21261 0.93408 1.00281 0.98787 1.21373 0.94483 0.95820 0.96777 0.83922 0.84014 0.89989 0.88673 0.91461 0.93458 0.94628 0.89580 0.93885 0.93113 0.95495 0.92903 0.91945 0.91006 0.82929 0.83368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.88 18.54 19.00 0.35 -11.53 16 2 C 0.28 5.65 15.33 88.33 1.35 7.00 16 3 C -0.05 -0.87 5.73 -21.36 -0.12 -1.00 16 4 C -0.07 -0.99 9.76 22.54 0.22 -0.77 16 5 C -0.13 -1.89 9.68 22.23 0.22 -1.68 16 6 C -0.05 -0.72 5.14 -19.81 -0.10 -0.83 16 7 C -0.08 -1.19 5.34 29.85 0.16 -1.03 16 8 C -0.10 -2.26 5.30 30.59 0.16 -2.10 16 9 C 0.02 0.55 4.82 86.30 0.42 0.96 16 10 N -0.49 -18.24 6.41 -927.94 -5.95 -24.19 16 11 C 0.02 0.95 6.57 83.57 0.55 1.50 16 12 C 0.02 0.83 3.77 -11.20 -0.04 0.79 16 13 C -0.53 -28.40 8.82 25.60 0.23 -28.18 16 14 H 0.06 3.09 7.81 -2.91 -0.02 3.07 16 15 C 0.01 0.74 5.46 84.65 0.46 1.20 16 16 N -0.92 -53.66 13.26 21.45 0.28 -53.38 16 17 Si 0.96 42.43 29.54 68.60 2.03 44.46 16 18 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 19 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 21 C 0.01 0.35 7.27 83.57 0.61 0.96 16 22 C -0.12 -1.54 9.68 22.23 0.22 -1.32 16 23 C -0.06 -0.84 9.76 22.54 0.22 -0.62 16 24 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 25 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 26 H 0.08 1.19 8.08 -2.38 -0.02 1.17 16 27 H 0.09 1.14 8.08 -2.39 -0.02 1.12 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.05 1.26 7.67 -2.39 -0.02 1.25 16 30 H 0.04 1.01 7.56 -2.38 -0.02 0.99 16 31 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.05 2.24 7.66 -2.39 -0.02 2.22 16 34 H 0.03 1.52 8.11 -2.38 -0.02 1.50 16 35 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 36 H 0.06 2.37 7.72 -2.39 -0.02 2.36 16 37 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 38 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 39 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -63.68 337.31 2.28 -61.41 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 1.02 Total: 8.34 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: 4.54 Total: -25.11 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -5.32 Total: -89.10 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -63.68 2.28 -61.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208860050.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.131 kcal (2) G-P(sol) polarization free energy of solvation -63.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds