Wall clock time and date at job start Mon Mar 30 2020 01:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36942 * 120.00233 * 2 1 4 4 H 1.07997 * 119.99930 * 203.04962 * 3 2 1 5 5 C 1.38812 * 119.99923 * 23.04359 * 3 2 1 6 6 N 1.31627 * 119.99857 * 12.93768 * 5 3 2 7 7 Si 1.86795 * 120.00132 * 192.94218 * 5 3 2 8 8 H 1.48502 * 109.47224 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47261 * 120.00311 * 7 5 3 10 10 H 1.48502 * 109.46869 * 240.00194 * 7 5 3 11 11 C 1.46501 * 120.00177 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47056 * 90.00037 * 11 2 1 13 13 C 1.52997 * 109.47154 * 180.02562 * 12 11 2 14 14 N 1.46500 * 109.47296 * 179.97438 * 13 12 11 15 15 C 1.34780 * 120.00079 * 180.02562 * 14 13 12 16 16 O 1.21739 * 119.99889 * 359.97438 * 15 14 13 17 17 C 1.46376 * 119.99995 * 180.27706 * 15 14 13 18 18 C 1.33973 * 119.22997 * 359.71625 * 17 15 14 19 19 O 1.35001 * 121.68763 * 180.37091 * 18 17 15 20 20 C 1.43247 * 116.76549 * 342.82057 * 19 18 17 21 21 C 1.53557 * 108.08375 * 45.48849 * 20 19 18 22 22 O 1.36211 * 119.23243 * 179.45255 * 17 15 14 23 23 H 1.09001 * 109.46616 * 275.12200 * 1 2 3 24 24 H 1.08998 * 109.46862 * 35.12606 * 1 2 3 25 25 H 1.08990 * 109.46792 * 155.12670 * 1 2 3 26 26 H 0.96990 * 119.99739 * 179.97438 * 6 5 3 27 27 H 1.08996 * 109.47066 * 329.99884 * 11 2 1 28 28 H 1.09004 * 109.47262 * 209.99917 * 11 2 1 29 29 H 1.08996 * 109.47308 * 59.99995 * 12 11 2 30 30 H 1.09004 * 109.46987 * 300.00049 * 12 11 2 31 31 H 1.09005 * 109.46978 * 60.00004 * 13 12 11 32 32 H 1.08997 * 109.47337 * 300.00191 * 13 12 11 33 33 H 0.96999 * 120.00147 * 359.97438 * 14 13 12 34 34 H 1.07998 * 119.15883 * 0.35767 * 18 17 15 35 35 H 1.09005 * 109.74282 * 165.13220 * 20 19 18 36 36 H 1.08996 * 109.74038 * 285.83972 * 20 19 18 37 37 H 1.09004 * 109.75270 * 61.47493 * 21 20 19 38 38 H 1.09004 * 109.75201 * 182.21450 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1651 1.2232 -0.3662 5 6 1.5388 2.3401 0.4706 6 7 0.4119 2.2597 1.1459 7 14 2.3158 4.0074 0.1452 8 1 3.5699 3.8264 -0.6293 9 1 1.3714 4.8507 -0.6308 10 1 2.6242 4.6704 1.4377 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4417 13 6 3.2170 -3.0363 -1.4412 14 7 3.4607 -3.4601 -2.8222 15 6 4.1223 -4.6084 -3.0680 16 8 4.5178 -5.2931 -2.1423 17 6 4.3710 -5.0288 -4.4478 18 6 3.9292 -4.2633 -5.4547 19 8 4.1246 -4.6072 -6.7454 20 6 5.1282 -5.5959 -7.0048 21 6 4.9423 -6.7396 -5.9971 22 8 5.0510 -6.1863 -4.6782 23 1 -0.3632 0.0918 1.0236 24 1 -0.3633 0.8405 -0.5913 25 1 -0.3632 -0.9323 -0.4322 26 1 -0.0148 3.0662 1.4750 27 1 1.6085 -2.0281 0.5147 28 1 3.1500 -1.1381 0.5143 29 1 3.0416 -0.9516 -1.9559 30 1 1.5001 -1.8416 -1.9555 31 1 2.6275 -3.7956 -0.9271 32 1 4.1694 -2.9062 -0.9273 33 1 3.1452 -2.9148 -3.5597 34 1 3.4031 -3.3478 -5.2280 35 1 5.0156 -5.9775 -8.0196 36 1 6.1182 -5.1561 -6.8840 37 1 3.9600 -7.1925 -6.1311 38 1 5.7183 -7.4907 -6.1451 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233553322.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:07 Heat of formation + Delta-G solvation = -66.386108 kcal Electronic energy + Delta-G solvation = -20267.168671 eV Core-core repulsion = 16919.015789 eV Total energy + Delta-G solvation = -3348.152881 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.36864 -39.39398 -37.31154 -36.22688 -34.82844 -32.86845 -31.72735 -30.16177 -28.84889 -26.00990 -25.76036 -25.09798 -22.43080 -21.68327 -20.45289 -19.60838 -18.60445 -18.52575 -16.72537 -16.69382 -15.88868 -15.62806 -15.35857 -15.10147 -14.76741 -14.58083 -14.47343 -13.95698 -13.62034 -13.28149 -12.94107 -12.71838 -12.55740 -11.72461 -11.46926 -11.38325 -11.05481 -10.99852 -10.81282 -10.79085 -10.48137 -10.19321 -9.98697 -9.84942 -9.80213 -9.10979 -8.55024 -8.49506 -6.74029 -5.71867 -3.19137 1.06597 2.42675 2.78830 3.14585 3.37508 3.44738 3.46771 3.57892 3.90611 4.41642 4.48267 4.49911 4.53829 4.82378 4.91134 5.08779 5.18151 5.42786 5.43755 5.51663 5.80203 5.86966 6.08504 6.12909 6.36836 6.40334 6.51681 6.74661 6.75307 6.92338 6.96562 7.37593 7.44157 7.73990 7.81385 8.12432 8.40687 9.24456 9.88017 10.36951 11.32955 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.031251 B = 0.003108 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.756521 B = 9005.867304 C = 9420.101085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.603 5.603 3 C -0.255 4.255 4 H 0.069 0.931 5 C 0.001 3.999 6 N -0.907 5.907 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.155 3.845 12 C -0.151 4.151 13 C 0.122 3.878 14 N -0.718 5.718 15 C 0.571 3.429 16 O -0.525 6.525 17 C -0.067 4.067 18 C 0.003 3.997 19 O -0.300 6.300 20 C 0.013 3.987 21 C 0.018 3.982 22 O -0.286 6.286 23 H 0.031 0.969 24 H 0.040 0.960 25 H -0.002 1.002 26 H 0.252 0.748 27 H 0.038 0.962 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.398 0.602 34 H 0.180 0.820 35 H 0.122 0.878 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.611 -15.305 -16.643 23.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.326 5.326 3 C -0.385 4.385 4 H 0.086 0.914 5 C -0.198 4.198 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.217 1.217 11 C 0.027 3.973 12 C -0.192 4.192 13 C -0.001 4.001 14 N -0.373 5.373 15 C 0.357 3.643 16 O -0.402 6.402 17 C -0.116 4.116 18 C -0.063 4.063 19 O -0.213 6.213 20 C -0.062 4.062 21 C -0.058 4.058 22 O -0.200 6.200 23 H 0.049 0.951 24 H 0.058 0.942 25 H 0.016 0.984 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.233 0.767 34 H 0.197 0.803 35 H 0.139 0.861 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.801 -15.688 -15.901 23.349 hybrid contribution 0.211 1.157 -0.718 1.378 sum 7.012 -14.531 -16.618 23.162 Atomic orbital electron populations 1.20794 0.82659 0.95329 0.99511 1.43908 1.01862 1.00680 1.86126 1.19234 0.98272 0.85607 1.35392 0.91353 1.25043 0.97912 0.98584 0.98224 1.70082 1.19471 1.27070 1.38636 0.86191 0.78531 0.84339 0.77515 1.20319 1.21651 1.21732 1.20593 0.96445 0.88552 0.91725 1.22561 0.99493 0.94048 1.03135 1.21534 1.00777 0.97128 0.80625 1.45989 1.57979 1.22941 1.10359 1.17135 0.78890 0.81562 0.86728 1.90854 1.50518 1.53594 1.45247 1.20490 1.06525 0.90451 0.94144 1.23178 1.02192 0.98650 0.82274 1.86109 1.55287 1.56750 1.23125 1.23739 0.91914 0.89422 1.01135 1.23702 1.04463 0.95904 0.81777 1.86479 1.66506 1.35889 1.31078 0.95067 0.94157 0.98367 0.93813 0.94320 0.93183 0.91416 0.92099 0.91380 0.91202 0.76655 0.80294 0.86053 0.89992 0.90351 0.86028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.96 8.98 59.85 0.54 4.49 16 2 N -0.60 -14.99 2.92 -181.12 -0.53 -15.52 16 3 C -0.26 -6.96 9.65 -15.06 -0.15 -7.10 16 4 H 0.07 1.81 7.86 -52.49 -0.41 1.40 16 5 C 0.00 0.02 5.10 -17.43 -0.09 -0.07 16 6 N -0.91 -26.52 10.71 55.49 0.59 -25.93 16 7 Si 0.90 21.73 29.57 -169.99 -5.03 16.70 16 8 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 9 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 C 0.16 3.07 5.64 -4.04 -0.02 3.05 16 12 C -0.15 -2.41 5.65 -26.73 -0.15 -2.56 16 13 C 0.12 1.73 5.67 -4.04 -0.02 1.71 16 14 N -0.72 -8.97 5.49 -61.71 -0.34 -9.31 16 15 C 0.57 8.35 7.73 -12.99 -0.10 8.25 16 16 O -0.53 -9.88 16.92 -10.06 -0.17 -10.05 16 17 C -0.07 -0.82 6.61 -37.81 -0.25 -1.07 16 18 C 0.00 0.03 10.57 29.23 0.31 0.34 16 19 O -0.30 -2.71 10.47 -30.83 -0.32 -3.03 16 20 C 0.01 0.08 7.29 37.45 0.27 0.36 16 21 C 0.02 0.13 7.32 37.45 0.27 0.40 16 22 O -0.29 -3.58 10.29 -45.75 -0.47 -4.05 16 23 H 0.03 0.83 7.34 -51.93 -0.38 0.45 16 24 H 0.04 1.05 7.34 -51.93 -0.38 0.67 16 25 H 0.00 -0.05 8.03 -51.93 -0.42 -0.46 16 26 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 28 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.40 3.83 6.31 -40.82 -0.26 3.57 16 34 H 0.18 1.26 6.08 -52.49 -0.32 0.95 16 35 H 0.12 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 320.44 15.07 4.83 4.83 Total: -1.00 -34.67 320.44 -6.35 -41.02 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -5.52 Total: -2.45 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 0.61 Total: 7.79 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.27 Total: -50.76 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.96 Total: -17.13 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.67 -6.35 -41.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233553322.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.370 kcal (2) G-P(sol) polarization free energy of solvation -34.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds